mRNA_P-wetherbeei_contig7051.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7051.1.1
Unique NamemRNA_P-wetherbeei_contig7051.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7051.1.1 vs. uniprot
Match: D7FKR5_ECTSI (Iron-sulfur cluster assembly protein, similar to nifU n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKR5_ECTSI)

HSP 1 Score: 327 bits (837), Expect = 1.070e-105
Identity = 187/349 (53.58%), Postives = 234/349 (67.05%), Query Frame = 1
Query:    1 EEAPAVRLEDRGVPMAHRGLHDFLYSADEDHGASTQGAARTVEVFDGTQLYKVEQWVKDHGESRHAAVYAVIGADDEVKFVGLSRNVALSLGAHLKNEGPQSVDRIRVHSYRFPRREEMERLRDEWIAACPQAPRGNAAGTEWMASIREAGTAAMTDEQRRAYEENKLKMRRAMADTTLIDELEQMSSEDIHMREAMLKMAVEGDDWSAVINAQTSATVDQQRGAATTDAPVADAAXXXXXXXGAVVSPFA-----------GGAAE---------LPGSAPAP--SECKGLEFTMENVDRVLDEVRPYLIADGGNCRVVGVDAEAMTVSLALQGACGSCPSSTMTMKV 981
            E A  VRLEDR VP AHRGLHDFLYS +EDHGA+    +  VE+FDGTQLY+V +W+KD+ ES+HAAVYAV+G D++V FVG+ RNVALSL AHL  EG   V  ++V S++FP+R++ME L+ +WI  C   P GN  G+EW    ++A   AM+  Q+ AYEENKLKMR+A+AD  L++E EQMSSEDI  R+  L+ AVE DDWS+VI+ QT  T + +      DAP A            ++SPF+           G AA          +P + P P  SEC  LEFT+ENVD+VLDEVRPYLIADGGN RV+GVD +   V LALQGACGSCPSST TMK+
Sbjct:   68 ETAEEVRLEDRDVPQAHRGLHDFLYSNEEDHGATASDGS--VELFDGTQLYEVSKWLKDNAESKHAAVYAVVGKDEKVNFVGVGRNVALSLAAHLAAEGESMVHMLKVRSFKFPKRDKMEALKAQWIEECGSTPVGNIKGSEWATGSKDAQN-AMSPAQKEAYEENKLKMRKAIADPGLVEETEQMSSEDIERRKR-LESAVEDDDWSSVIDGQTKLTEEPK---VEVDAPTAT-----------IISPFSSDGMPVGVGPDGMAAPPLPPXXXXPVPDAPPTPPASECNDLEFTLENVDKVLDEVRPYLIADGGNVRVMGVDIDRRVVKLALQGACGSCPSSTTTMKM 398          
BLAST of mRNA_P-wetherbeei_contig7051.1.1 vs. uniprot
Match: A0A836CLJ7_9STRA (NifU-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLJ7_9STRA)

HSP 1 Score: 322 bits (826), Expect = 1.980e-104
Identity = 175/322 (54.35%), Postives = 220/322 (68.32%), Query Frame = 1
Query:   16 VRLEDRGVPMAHRGLHDFLYSADEDHGASTQGAARTVEVFDGTQLYKVEQWVKDHGESRHAAVYAVIGADDEVKFVGLSRNVALSLGAHLKNEGPQSVDRIRVHSYRFPRREEMERLRDEWIAACPQAPRGNAAGTEWMASIREAGTAAMTDEQRRAYEENKLKMRRAMADTTLIDELEQMSSEDIHMREAMLKMAVEGDDWSAVINAQTSATVDQQRGAATTDAPVADAAXXXXXXXGAVVSPFAGGAAELPGSAPAPSECKGLEFTMENVDRVLDEVRPYLIADGGNCRVVGVDAEAMTVSLALQGACGSCPSSTMTMKV 981
            VRLEDR VP+AH GLHDFLY   EDHGA+++GAA   E F G + Y V +W+K +G S+ AAVY+VIGA+ ++ FVG+SRNVA+SL  HL+NEGP  V   R+ S+R+P+R EME LR++W+AA    P GN  G EW  +I++A + AM  EQR +YEE KLKMR+A+ADT+L+DELE     D   R A L+ +VE DDWSAVIN QT+ATV  +    TT                           EL G+   P EC+ L+FT++NVD+VLDEVRPYLIADGGNCRVV VD E   VSLALQGACGSCPSST+TM++
Sbjct:   69 VRLEDRNVPVAHAGLHDFLYGDQEDHGATSKGAAAGGEEFIGNRSYSVTEWLKQYGNSKIAAVYSVIGANGKLAFVGMSRNVAISLQCHLQNEGPNKVALARIQSFRYPKRSEMEALREQWLAAAEDVPEGNTPGNEWAQTIKDAAS-AMAAEQRGSYEEMKLKMRKAIADTSLVDELEAQDL-DSETRRANLQASVENDDWSAVINQQTAATVTPRPEEVTTXXXXXXXX-------------------ELLGTGAEPLECRALDFTIDNVDKVLDEVRPYLIADGGNCRVVAVDQETRVVSLALQGACGSCPSSTVTMQM 369          
BLAST of mRNA_P-wetherbeei_contig7051.1.1 vs. uniprot
Match: A0A0G4ERY6_VITBC (GIY-YIG domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ERY6_VITBC)

HSP 1 Score: 244 bits (623), Expect = 3.110e-73
Identity = 151/326 (46.32%), Postives = 201/326 (61.66%), Query Frame = 1
Query:   28 DRGVPMAHRGLHDFLYS---ADEDHGASTQGAARTVEVFDGTQLYKVEQWVKDHGESRHAAVYAVIGADDEVKFVGLSRNVALSLGAHLKNEGPQSVDRIRVHSYRFPRREEMERLRDEWIAACPQAPRGNA-AGTEWMASIREAGTAAMTDEQRRAYEENKLKMRRAMADTTLIDELEQMSSEDIHMREAMLKMAVEGDDWSAVINAQTSATVDQQRGAATTDAPVA---DAAXXXXXXXGAVVSPFAGGAAELPGSAPAPSE-CKGLEFTMENVDRVLDEVRPYLIADGGNCRVVGVDAEAMTVSLALQGACGSCPSSTMTMKV 981
            D  VP  HRGLH FLY     D+ H A   G+   V  FDG  +Y V++W+  H E R   VY+V+  D  V++VG+SRNVA++L +H +   P +V  +R+ S+ +PRREEM+ LRDEWI    + P GN  A   +  +I++A T  M D++R+ Y +NKLK+RRAMAD TLIDE   +  E+I  REA+L  A++ DDWSAVI+ QT+AT++ Q   A     +    D           VVSPFA G       A   +E  + L  T++NVDRVLD+VRPYL ADGGN  VV VD    T+SLALQGACG+CPSS MT+K+
Sbjct:   91 DANVPDGHRGLHSFLYDDGKEDDAHAAKPAGSRGRVR-FDGVNMYGVDRWLGMHREERVCGVYSVLDEDRSVQYVGVSRNVAVALESHRRQTPPGTVAFVRIKSWDYPRREEMDALRDEWIRESGRVPPGNEDASLGFAETIKDASTDGMKDDERQQYHDNKLKLRRAMADNTLIDETPNIIEEEIMNREALLH-ALKDDDWSAVIDGQTNATLNPQLINAQLQEALKIGRDDTSTDTQGEANVVSPFAPGRQGDDAVAARTAEPAESLPLTVDNVDRVLDDVRPYLQADGGNVMVVAVDPTHKTISLALQGACGNCPSSQMTLKM 414          
BLAST of mRNA_P-wetherbeei_contig7051.1.1 vs. uniprot
Match: A0A4D9CNN7_9STRA (NifU domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CNN7_9STRA)

HSP 1 Score: 203 bits (517), Expect = 8.710e-58
Identity = 142/349 (40.69%), Postives = 185/349 (53.01%), Query Frame = 1
Query:   28 DRGVPMAHRGLHDFLYSADEDHGASTQGAARTVEVFDGTQ-LYKVEQWVKDHGESRHAAVYAVIGADDEVKFVGLSRNVALSLGAHLKNEGPQSVDRIRVHSYRFPRREEMERLRDEW---IAACPQAPRGNAAGTE-----WMASIRE-----AGTAAMTDEQRRAYEENKLKMRRAMADTTLIDELEQMSSEDIHM---------REAMLKMAVEGDDWSAVINAQTSATVDQQRGAATTDAPVADAAXXXXXXXGAVVSPFAGGAAELPGS--------APAPSECKGLEFTMENVDRVLDEVRPYLIADGGNCRVVGVDAEAMTVSLALQGACGSCPSSTMTMKV 981
            D  VP  H+GLH+FLY  D+ HG     A  T   F   Q  +    ++KD  ++R AAVY V  A   +++VG++RNV ++L  HL+  GP+ V  + + S+R+P+REEM  ++  W   +AA  Q P GN +  E     W  SIRE     AG          A+ + K K+R AMAD TL DELE +  E+ +          R A LK AVE  DWS +I  QT +T+ +     T DA   +         G + SPF  G A  P             P+E   LE T ENVDRVL+EVRPYLIADGGN  VV +D  A  + L LQGACGSCPSST TMK+
Sbjct:   79 DDNVPEGHKGLHEFLYGDDDAHGTRAPPAGSTSTSFTRAQGPFPAASFLKDLQDTRLAAVYGVYDASGTLRYVGVTRNVVMALEGHLQAHGPEVVASVALESFRYPKREEMAAVQASWLEEVAATGQNPEGNRSEGEGGSGGWAKSIREVVESGAGLGG-------AHADTKTKLRTAMADPTLQDELEDLDEEEEYXXXXXXXRSARRAQLKAAVEESDWSGMIEGQTRSTIPE----GTRDAAAKEGG-------GEIASPFREGGAGSPSXXXXXXXXXTSLPTE-DTLELTPENVDRVLEEVRPYLIADGGNIEVVRIDQVARDIFLRLQGACGSCPSSTTTMKM 408          
BLAST of mRNA_P-wetherbeei_contig7051.1.1 vs. uniprot
Match: A0A7S2SCE1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SCE1_9STRA)

HSP 1 Score: 191 bits (484), Expect = 7.330e-54
Identity = 122/328 (37.20%), Postives = 166/328 (50.61%), Query Frame = 1
Query:    1 EEAPAVRLEDRGVPMAHRGLHDFLYSADEDHGASTQGAARTVEVFDGTQLYKVEQWVKDHGESRHAAVYAVIGADDEVKFVGLSRNVALSLGAHLKNEGPQSVDRIRVHSYRFPRREEMERLRDEWIAACPQAPRGNAAGTEWMASIREAGTAAMTDEQRRAYEENKLKMRRAMADTTLIDELEQMSSEDIHMREAMLKMAVEGD-DWSAVINAQTSATVDQQRGAATTDAPVADAAXXXXXXXGAVVSPFAGGAAELPGSAPAPSECKGLEFTMENVDRVLDEVRPYLIADGGNCRVVGVDAEAMTVSLALQGACGSCPSSTMTMKV 981
            EE+P +R+EDR VP AH+GLH FLYS +  H AST        V D T+L  VE+W    G  + AAVYAV   +   ++VG++R++ +SL AHL+ + P  V   RV +  FP +  ME ++  W+A    +      G  W ++   A   A       AYE+ KLK+R+AMADTTL D                     +GD DWS  ++ QTS     Q                                        A +   GL+FTMEN+D+VLDEVRPYL+ADGGN +V+ ++ E   + + LQGACGSCPSST TMK+
Sbjct:   53 EESPELRVEDRDVPAAHKGLHSFLYSDEASHEASTTQDG-VASVADETRL--VEEWAAAFGAKKVAAVYAVFDTEGVARYVGITRHLTMSLAAHLREKSPSVVHSARVTTVSFPSKAAMEEVQAAWMAEYGLSVEA-LNGDSWSSTTASARAVAEDPADMAAYEDTKLKLRKAMADTTLAD-------------------GEQGDSDWSQAVSDQTSEATGNQ----------------------------------------ATASAGGLDFTMENIDQVLDEVRPYLVADGGNIKVLSIEPEPRNIIVELQGACGSCPSSTTTMKM 317          
BLAST of mRNA_P-wetherbeei_contig7051.1.1 vs. uniprot
Match: UPI001CC980A6 (GIY-YIG nuclease family protein n=1 Tax=Kovacikia minuta TaxID=2931930 RepID=UPI001CC980A6)

HSP 1 Score: 182 bits (463), Expect = 4.070e-53
Identity = 96/209 (45.93%), Postives = 138/209 (66.03%), Query Frame = 1
Query:   16 VRLEDRGVPMAHRGLHDFLYSADEDHGASTQGAARTVEVFDGTQLYKVEQWVKDHGESRHAAVYAVIGADDEVKFVGLSRNVALSLGAHLKNEGPQSVDRIRVHSYRFPRREEMERLRDEWIAACPQAPRGNAAGT-EWMASIREAGTAAMTDEQRRAYEENKLKMRRAMADTTLIDELEQMSSEDIHMREAMLKM--AVEGDDWSAVI 633
            + + D+ VP+AH+GLH FLYS++++HG +T     TV V DGT++  VE W       + A VYAV+  + + +++G SR+V  SL  H+  +G ++   IRV +++FP R+ ME LRDEW+AA  Q P GN +G   W  ++ EA  A MTD +R AYE+ KLK+R+AMADTTLIDEL+Q +++D    E   K+  AVE DDWSAV+
Sbjct:    7 IPIADQNVPVAHQGLHSFLYSSEDEHGTTTPA---TVVVNDGTEVVPVENWRSLTNRVKVAGVYAVLDGNHQTQYIGYSRDVQQSLAGHIAQQGTETCALIRVQTFKFPTRQAMEALRDEWLAALEQVPPGNRSGQGAWAKTVGEAARATMTDAERNAYEDKKLKLRKAMADTTLIDELKQSATQDDPETERRRKLEAAVENDDWSAVV 212          
BLAST of mRNA_P-wetherbeei_contig7051.1.1 vs. uniprot
Match: A0A2R5FIN1_NOSCO (GIY-YIG domain-containing protein n=17 Tax=Nostoc TaxID=1177 RepID=A0A2R5FIN1_NOSCO)

HSP 1 Score: 174 bits (441), Expect = 9.630e-50
Identity = 94/212 (44.34%), Postives = 136/212 (64.15%), Query Frame = 1
Query:   22 LEDRGVPMAHRGLHDFLYSADEDHGASTQGAARTVEVFDGTQLYKVEQWVKDHGESRHAAVYAVIGADDEVKFVGLSRNVALSLGAHLKNEGPQSVDRIRVHSYRFPRREEMERLRDEWIAACPQAPRGNAA-GTEWMASIREAGTAAMTDEQRRAYEENKLKMRRAMADTTLIDELEQMSSEDIHMREAMLKMAVEGDDWSAVINAQTSAT 654
            +E + VP+ HRGLH+FLYS+D++H A T+ +       DGT++  +E W      ++ A VYAV+ A+   +++G SRNV LSL +H+   G Q    +RV +++FP+R+EME LRD WIA     P GNA  G  W +++ EA  A M++ +R+AYEE KLK+R+AMADTTL  E E + +  I  R+  L+ AV  DDWS +I+AQT  T
Sbjct:    9 IEHQNVPINHRGLHEFLYSSDDEHTA-TEVSITPELANDGTEIVNLEAWSASAQNAKIAGVYAVLDAERTTQYIGYSRNVLLSLNSHVSQNGQQKCAFLRVQAFKFPKRQEMEDLRDAWIAELESTPPGNATDGEMWASTVGEAAKAVMSEAERQAYEEKKLKLRKAMADTTLSKESETIDA-TIAERQRQLEAAVTNDDWSVIIDAQTQET 218          
BLAST of mRNA_P-wetherbeei_contig7051.1.1 vs. uniprot
Match: A0A349JIJ2_9CYAN (Uncharacterized protein n=1 Tax=Microcoleaceae bacterium UBA11344 TaxID=2055792 RepID=A0A349JIJ2_9CYAN)

HSP 1 Score: 172 bits (436), Expect = 5.230e-49
Identity = 96/214 (44.86%), Postives = 137/214 (64.02%), Query Frame = 1
Query:   16 VRLEDRGVPMAHRGLHDFLYSADEDHGASTQGAARTVEVFDGTQLYKVEQWVKDHGESRHAAVYAVIGADDEVKFVGLSRNVALSLGAHLKNEGPQSVDRIRVHSYRFPRREEMERLRDEWIAACPQAPRGNAAGTE-WMASIREAGTAAMTDEQRRAYEENKLKMRRAMADTTLIDELEQMSSEDIHMREAMLKMAVEGDDWSAVINAQTSAT 654
            + +E + VP+AH GLH+FLYS+DE+H A    AA      DGTQ+  ++ W      ++ A VYAVI    + +++G SRN+ LS+  H+   G ++   +RV +++FP+REEME LRD WIAA    P GN A +E W  ++ +A  +AM+ E+++AYEE KLK+R+AMAD+TL  ELE  +S D   R   L+ AV  DDWSAVI +QT  T
Sbjct:    7 LSIEHQNVPVAHEGLHNFLYSSDEEHSAV---AAIAAWENDGTQIMAIDVWRDLATNAKVAGVYAVIDNSHQTQYIGYSRNILLSINGHIAQNGSENCAFLRVQTFKFPKREEMENLRDSWIAALGSIPPGNGAESEMWAITVGQAARSAMSAEEQKAYEEKKLKLRKAMADSTLTKELETATS-DAETRHK-LEAAVHNDDWSAVIQSQTQET 215          
BLAST of mRNA_P-wetherbeei_contig7051.1.1 vs. uniprot
Match: UPI00187F2277 (GIY-YIG nuclease family protein n=1 Tax=Microcoleus sp. LEGE 07076 TaxID=915322 RepID=UPI00187F2277)

HSP 1 Score: 172 bits (435), Expect = 8.830e-49
Identity = 95/214 (44.39%), Postives = 135/214 (63.08%), Query Frame = 1
Query:   16 VRLEDRGVPMAHRGLHDFLYSADEDHGASTQGAARTVEVFDGTQLYKVEQWVKDHGESRHAAVYAVIGADDEVKFVGLSRNVALSLGAHLKNEGPQSVDRIRVHSYRFPRREEMERLRDEWIAACPQAPRGNAAGTE-WMASIREAGTAAMTDEQRRAYEENKLKMRRAMADTTLIDELEQMSSEDIHMREAMLKMAVEGDDWSAVINAQTSAT 654
            V +E + VP+AH GLH+FLYS+D +H A    AA      DGTQ+  ++ W      ++ A VYAVI    + +++G SRN+ LSL  H+   G ++   +RV +++FP+REEME LRD WIA     P GN A +E W +++  A  AAM+ ++++AYEE KLK+R+AMAD+TL  ELE  +  D   R   L+ AV+ DDWSAVI +QT  T
Sbjct:   12 VPIEHQNVPVAHEGLHNFLYSSDSEHSAV---AAIPALENDGTQIMAIDTWRDLATNAKVAGVYAVIDNSHQTQYIGYSRNILLSLNGHIAQNGSENCAFLRVQTFKFPKREEMENLRDSWIAELGSIPPGNGADSEMWASTVGAAARAAMSADEQKAYEEKKLKLRKAMADSTLTKELETATKSDAE-RGKDLESAVDNDDWSAVIQSQTQET 221          
BLAST of mRNA_P-wetherbeei_contig7051.1.1 vs. uniprot
Match: UPI001EFC14CE (GIY-YIG nuclease family protein n=2 Tax=Nodularia TaxID=159191 RepID=UPI001EFC14CE)

HSP 1 Score: 171 bits (434), Expect = 1.070e-48
Identity = 91/212 (42.92%), Postives = 135/212 (63.68%), Query Frame = 1
Query:   22 LEDRGVPMAHRGLHDFLYSADEDHGASTQGAARTVEVFDGTQLYKVEQWVKDHGESRHAAVYAVIGADDEVKFVGLSRNVALSLGAHLKNEGPQSVDRIRVHSYRFPRREEMERLRDEWIAACPQAPRGNAA-GTEWMASIREAGTAAMTDEQRRAYEENKLKMRRAMADTTLIDELEQMSSEDIHMREAMLKMAVEGDDWSAVINAQTSAT 654
            +E + VP+ HRGLH+FLYS+D++H  +      T+   DG ++  +E W +    ++ A VYAV+  + E +++G SRNV LSL  H+   G Q    +RV +++FP+R+EME LRD WI      PRGNA+ G  W +++ EA  A M++ +R AYEE KLK+R+AMAD+TL  E+E +       R+  L+ AV+ DDWS+VI+AQT  T
Sbjct:    9 IEHQNVPVNHRGLHEFLYSSDDEHDTTEVVITPTL-ANDGREIMPLETWRRADQNAKIAGVYAVLDGEGETQYIGYSRNVLLSLNGHVSQYGEQKCAFVRVQNFKFPKRQEMEDLRDAWIGELECTPRGNASEGGMWASTVGEAAKAVMSEGERHAYEEKKLKLRKAMADSTLSKEIEAVDG-SAEERQRQLEAAVKNDDWSSVIDAQTEET 218          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7051.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKR5_ECTSI1.070e-10553.58Iron-sulfur cluster assembly protein, similar to n... [more]
A0A836CLJ7_9STRA1.980e-10454.35NifU-like domain-containing protein n=1 Tax=Tribon... [more]
A0A0G4ERY6_VITBC3.110e-7346.32GIY-YIG domain-containing protein n=2 Tax=Vitrella... [more]
A0A4D9CNN7_9STRA8.710e-5840.69NifU domain-containing protein n=2 Tax=Monodopsida... [more]
A0A7S2SCE1_9STRA7.330e-5437.20Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
UPI001CC980A64.070e-5345.93GIY-YIG nuclease family protein n=1 Tax=Kovacikia ... [more]
A0A2R5FIN1_NOSCO9.630e-5044.34GIY-YIG domain-containing protein n=17 Tax=Nostoc ... [more]
A0A349JIJ2_9CYAN5.230e-4944.86Uncharacterized protein n=1 Tax=Microcoleaceae bac... [more]
UPI00187F22778.830e-4944.39GIY-YIG nuclease family protein n=1 Tax=Microcoleu... [more]
UPI001EFC14CE1.070e-4842.92GIY-YIG nuclease family protein n=2 Tax=Nodularia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7051contigP-wetherbeei_contig7051:61..3067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FKR5
PFAMsNifU
Model size981
Max annot lvl2759|Eukaryota
KEGG koko:K22074
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Exons7
Evalue1.76e-106
EggNOG OGsCOG0694@1|root,KOG2358@2759|Eukaryota
DescriptionNFU1 iron-sulfur cluster scaffold
Cds size981
COG categoryO
BRITEko00000,ko03029
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7051.1.1prot_P-wetherbeei_contig7051.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7051 61..3067 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186954.683269-CDS-P-wetherbeei_contig7051:60..2071683186954.683269-CDS-P-wetherbeei_contig7051:60..207Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7051 61..207 +
1683186954.6975205-CDS-P-wetherbeei_contig7051:618..7021683186954.6975205-CDS-P-wetherbeei_contig7051:618..702Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7051 619..702 +
1683186954.709028-CDS-P-wetherbeei_contig7051:921..10371683186954.709028-CDS-P-wetherbeei_contig7051:921..1037Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7051 922..1037 +
1683186954.7181358-CDS-P-wetherbeei_contig7051:1380..15101683186954.7181358-CDS-P-wetherbeei_contig7051:1380..1510Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7051 1381..1510 +
1683186954.7285082-CDS-P-wetherbeei_contig7051:1898..20181683186954.7285082-CDS-P-wetherbeei_contig7051:1898..2018Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7051 1899..2018 +
1683186954.73651-CDS-P-wetherbeei_contig7051:2317..25571683186954.73651-CDS-P-wetherbeei_contig7051:2317..2557Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7051 2318..2557 +
1683186954.7461948-CDS-P-wetherbeei_contig7051:2923..30671683186954.7461948-CDS-P-wetherbeei_contig7051:2923..3067Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7051 2924..3067 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7051.1.1

>prot_P-wetherbeei_contig7051.1.1 ID=prot_P-wetherbeei_contig7051.1.1|Name=mRNA_P-wetherbeei_contig7051.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=327bp
EEAPAVRLEDRGVPMAHRGLHDFLYSADEDHGASTQGAARTVEVFDGTQL
YKVEQWVKDHGESRHAAVYAVIGADDEVKFVGLSRNVALSLGAHLKNEGP
QSVDRIRVHSYRFPRREEMERLRDEWIAACPQAPRGNAAGTEWMASIREA
GTAAMTDEQRRAYEENKLKMRRAMADTTLIDELEQMSSEDIHMREAMLKM
AVEGDDWSAVINAQTSATVDQQRGAATTDAPVADAASADAIASGAVVSPF
AGGAAELPGSAPAPSECKGLEFTMENVDRVLDEVRPYLIADGGNCRVVGV
DAEAMTVSLALQGACGSCPSSTMTMKV
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mRNA from alignment at P-wetherbeei_contig7051:61..3067+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7051.1.1 ID=mRNA_P-wetherbeei_contig7051.1.1|Name=mRNA_P-wetherbeei_contig7051.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3007bp|location=Sequence derived from alignment at P-wetherbeei_contig7051:61..3067+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGAGGCGCCGGCGGTGCGGTTGGAGGACCGCGGCGTGCCCATGGCGCA CCGCGGCCTCCACGACTTCCTCTACAGTGCCGACGAGGATCACGGGGCGT CCACGCAGGGCGCCGCCAGAACCGTCGAGGTCTTTGACGGGACGCAGGTG CGTGCGGCGGCGCGGCGAATGGGGCCAGGCCCTATCCAATCCGGCTTGGC AGACTGGCTGTGAATATGGCTGGTATTAAACCTGGCTTGTTAATGACTGC GATTTCGTTGAAGTCGCAAACGGCGGAGCCTCATGCGTGCTATACGTCTG GGCATGTCGATGCCTGCACGTGTTCGCCGCATGTCTCTTACGCTATGGAT TGCGAGTATTGCACGGTGCTCTTTGGAACAGTACCGAGCCAGATTAGTTT TAAGGCCGAAAGCTGAGCAGACCGCGTCGATTGGCATCCTCATCACCGCC GTTTGCTCTTCTTCCCCTGCCGGCTGTCCCTCACGTCAACTCGAAACGCG GGTGCCGTTACTCGCCCGTTACCTTTTTTCCTCGCCCTTTACTTTTACTC GTTGGCAGCTGTATAAGGTGGAGCAGTGGGTAAAAGACCACGGCGAGTCG AGGCACGCCGCCGTGTACGCGGTCATTGGCGCCGACGATGAGGTATGCCG CTTGTGACGCTCCCCTTTGTGGCACAGCTTGCTCCCCCTTGCCAGCCTTT GCGGCGATTCTCTTACTCCAAGGGCAGACGAACGCTGATTTATCATCACT TAAGAAATCCCTCTTTGGTGGCGGGTAGGTCGTAACCGAGCAGAGCTTAC ACGATCGATGCCTTGTCCTTCCCTCCGTCTCTCTATGCCACTGACCACGC TCTTTGCTCAGGTTAAATTCGTCGGTCTGAGCCGCAACGTGGCGCTGTCG TTGGGAGCACACCTCAAGAACGAGGGCCCGCAGAGCGTCGACCGGATCCG CGTACATAGCTACCGCTTCCCGCGCCGGTGGGTCAAAAGTGGATTTGTGG TGGTATGTGGCTTTTTCTTTTTCAACGAGTGCAACGGCGGCCAGGGTGGG ACTGGAGCTTCTGTTCAGCGTCGAAGTTTCATTTTAAGCGTGAATCGGGC AGGGCGTCGGGCCATGGGATGTCTGAGCTGATTGCTGTTTCCTGTGTTCC TTCTCTCCTAACCATGAATCTTTCCTCTTTTCCCTCCTTCGGTGGATAAC CCATTTTTCAAATAAAACCGTCATGTGTATGGCGCCGCTGCCACGTACCG GCACGCAACGGCCACCGCGCCTGCACCATCACGGTTCAATGCGGCCTGAT CCGGCGCGGCGTATCCGCAGGGAGGAGATGGAGCGGCTGCGCGACGAATG GATCGCGGCGTGCCCGCAGGCGCCCCGCGGCAACGCGGCGGGCACAGAGT GGATGGCGTCCATCCGGGAGGCTGGCACCGCTGCCATGACGGACGAGCAG GTCCGTTTCTGTCGGTTGTCCTGGGCGGTTCGGCGAGTTCCATTGTTGTT GCTCGCGTCCTCGCGGTAGGCTGTCTTGCTGGCGGAGGGAGCTGTTTTGG GATTTCTGTCTTTTTGTTTTCAGCCTTTCTGCCTGCTGGTTTTCTTTATC TAATTTAGCCTTTGACCTCTCTCCTTGTCTTTATGGGAAGTGGCATGGTT TAGGAGGAGCGGAAGCTGAACTTCGACTATGCTTGTTTTACAAGGCATCT GCTCTTAACCACCGCATGTCAAACCCTCTCCCTCCTTTTGATTCTCTGTT TTGCGAAATTTTAACCCAACCGCTGATGGACTGTCGGTGGCTGTACCCCG GCGCGTGACCGGACTGGCTGATCGGTCCTGGGCGGCAGCGGCGGGCGTAC GAGGAGAACAAGCTGAAGATGCGGCGGGCGATGGCTGACACGACGCTTAT CGACGAGCTCGAGCAGATGAGCAGCGAGGACATCCACATGCGGGAGGCCA TGCTCAAGGTGAGAAGGAGAAGGAGCGGCGCAGTCGTGGCGGGAAGGTAT CTGGGAAATGCCGGCAGGAGGCGGTTTTAGGTGAAGGCGATGTGGCGCGA AAAGGGGAAAGGAAAGACGGGGCTGATCGCGGCTGCATGTGGGATTGCTG GCCGCCTGCGGACGAGACGCCTGGTTGATACATACGGTTTTGGGGCGTTG ACCCTGTTCTGTGGGTGTGAGAAATGAGCGCCGCCTTCTTACTTGCTCCT CGCTCTCGCCGCACGGCCGCTCCATTCCCCTCCTTCGTGGTCTGACTGGG CTGTCAGATGGCAGTGGAGGGGGACGACTGGAGCGCCGTCATCAATGCTC AGACCTCCGCCACGGTCGACCAGCAGCGGGGAGCAGCCACCACGGACGCC CCGGTGGCCGACGCGGCGTCTGCTGACGCGATCGCATCGGGCGCCGTCGT CAGCCCTTTCGCCGGGGGCGCGGCGGAGTTGCCGGGGTCGGCGCCCGCAC CGTCGGAGTGCAAGGGGCTCGAGTTCACCATGGAGAACGTCGACCGAGTG AGATTTTTTGGATATCGGCTGCCGCCATTCATTTTTGCTACATGGGTGTT TGTGAGATAGAACTTATTGGTTGATAAGTTGCTGTCTTTTCAGTGAATCT TGCGGCGTGTTGGCACAGCTGCTACGTAACGCAGGATGAGCTTATACGAG CCACTGCTGGCAAATGCCGCGAATGGCTGTGTGGATCACTGCCGGTTCCT TCCAGCCTCCTGCCCGGTCGTGCATGCCTCCCCTCCACTGCTCCTGCTTT TCCTGTGCACCTCCTATTAGACTAAATAAACCACCTCACGTCTCCTCCTT TTCTCGCGAAATACCGTCTCTTTCTGTTCGCTCAAAAAACGCTGGTATAA CAACGCAATGCAGGTGCTGGATGAGGTGCGGCCGTACCTGATCGCGGACG GCGGCAACTGCCGCGTGGTCGGGGTGGACGCCGAAGCCATGACCGTGTCG CTGGCGCTGCAAGGCGCCTGCGGCTCGTGCCCCTCCTCCACCATGACCAT GAAGGTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7051:61..3067+

>mRNA_P-wetherbeei_contig7051.1.1 ID=mRNA_P-wetherbeei_contig7051.1.1|Name=mRNA_P-wetherbeei_contig7051.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=981bp|location=Sequence derived from alignment at P-wetherbeei_contig7051:61..3067+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGAGGCGCCGGCGGTGCGGTTGGAGGACCGCGGCGTGCCCATGGCGCA
CCGCGGCCTCCACGACTTCCTCTACAGTGCCGACGAGGATCACGGGGCGT
CCACGCAGGGCGCCGCCAGAACCGTCGAGGTCTTTGACGGGACGCAGCTG
TATAAGGTGGAGCAGTGGGTAAAAGACCACGGCGAGTCGAGGCACGCCGC
CGTGTACGCGGTCATTGGCGCCGACGATGAGGTTAAATTCGTCGGTCTGA
GCCGCAACGTGGCGCTGTCGTTGGGAGCACACCTCAAGAACGAGGGCCCG
CAGAGCGTCGACCGGATCCGCGTACATAGCTACCGCTTCCCGCGCCGGGA
GGAGATGGAGCGGCTGCGCGACGAATGGATCGCGGCGTGCCCGCAGGCGC
CCCGCGGCAACGCGGCGGGCACAGAGTGGATGGCGTCCATCCGGGAGGCT
GGCACCGCTGCCATGACGGACGAGCAGCGGCGGGCGTACGAGGAGAACAA
GCTGAAGATGCGGCGGGCGATGGCTGACACGACGCTTATCGACGAGCTCG
AGCAGATGAGCAGCGAGGACATCCACATGCGGGAGGCCATGCTCAAGATG
GCAGTGGAGGGGGACGACTGGAGCGCCGTCATCAATGCTCAGACCTCCGC
CACGGTCGACCAGCAGCGGGGAGCAGCCACCACGGACGCCCCGGTGGCCG
ACGCGGCGTCTGCTGACGCGATCGCATCGGGCGCCGTCGTCAGCCCTTTC
GCCGGGGGCGCGGCGGAGTTGCCGGGGTCGGCGCCCGCACCGTCGGAGTG
CAAGGGGCTCGAGTTCACCATGGAGAACGTCGACCGAGTGCTGGATGAGG
TGCGGCCGTACCTGATCGCGGACGGCGGCAACTGCCGCGTGGTCGGGGTG
GACGCCGAAGCCATGACCGTGTCGCTGGCGCTGCAAGGCGCCTGCGGCTC
GTGCCCCTCCTCCACCATGACCATGAAGGTA
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