mRNA_P-wetherbeei_contig7050.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig7050.1.1 vs. uniprot
Match: A0A6H5KQM0_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM0_9PHAE) HSP 1 Score: 119 bits (299), Expect = 2.460e-24 Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 1
Query: 1348 RVQATGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFESELEAASAYDVAAVLHFGAGAKLNF 1554
RVQA+GRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVF+SE +AA AYD AA+ HF GAKLNF
Sbjct: 393 RVQASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNF 461
BLAST of mRNA_P-wetherbeei_contig7050.1.1 vs. uniprot
Match: A0A835Z3I9_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3I9_9STRA) HSP 1 Score: 114 bits (284), Expect = 6.060e-24 Identity = 56/66 (84.85%), Postives = 63/66 (95.45%), Query Frame = 1
Query: 1354 QATGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFESELEAASAYDVAAVLHFGAGAKLN 1551
QA+GRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGV++SEL+AA AY+ +A+ HFGAGAKLN
Sbjct: 227 QASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVYDSELQAARAYNDSALEHFGAGAKLN 292
BLAST of mRNA_P-wetherbeei_contig7050.1.1 vs. uniprot
Match: D8LFR4_ECTSI (Pathogenesis-related transcriptional factor and ERF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFR4_ECTSI) HSP 1 Score: 114 bits (285), Expect = 4.940e-23 Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 1
Query: 1357 ATGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFESELEAASAYDVAAVLHFGAGAKLNF 1554
A+GRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVF+SE +AA AYD AA+ HF GAKLNF
Sbjct: 338 ASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNF 403
BLAST of mRNA_P-wetherbeei_contig7050.1.1 vs. uniprot
Match: A0A6V1UZI2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UZI2_HETAK) HSP 1 Score: 108 bits (270), Expect = 2.040e-22 Identity = 53/69 (76.81%), Postives = 61/69 (88.41%), Query Frame = 1
Query: 1348 RVQATGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFESELEAASAYDVAAVLHFGAGAKLNF 1554
RVQ+ GRRGPRGQS+FKGVC+TRAGKWR+VIY+GRKQ YLGVFE+E EAA AYD +AV +FG GA LNF
Sbjct: 137 RVQSAGRRGPRGQSQFKGVCVTRAGKWRSVIYVGRKQLYLGVFETEQEAAKAYDNSAVKYFGDGAVLNF 205
BLAST of mRNA_P-wetherbeei_contig7050.1.1 vs. uniprot
Match: A0A7S3Y6J2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6J2_HETAK) HSP 1 Score: 108 bits (270), Expect = 2.710e-22 Identity = 53/69 (76.81%), Postives = 61/69 (88.41%), Query Frame = 1
Query: 1348 RVQATGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFESELEAASAYDVAAVLHFGAGAKLNF 1554
RVQ+ GRRGPRGQS+FKGVC+TRAGKWR+VIY+GRKQ YLGVFE+E EAA AYD +AV +FG GA LNF
Sbjct: 150 RVQSAGRRGPRGQSQFKGVCVTRAGKWRSVIYVGRKQLYLGVFETEQEAAKAYDNSAVKYFGDGAVLNF 218
BLAST of mRNA_P-wetherbeei_contig7050.1.1 vs. uniprot
Match: A0A835YVU4_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVU4_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 9.190e-16 Identity = 50/78 (64.10%), Postives = 57/78 (73.08%), Query Frame = 1
Query: 1357 ATGRRGPRGQSRFKGVCITRAGKWRAVI-------------YIGRKQKYLGVFESELEAASAYDVAAVLHFGAGAKLN 1551
A RRGPRGQSRFKGVCITRAGKWRAVI +IGR+QKYLGVF+SE++AA AY+ +A FGA AKLN
Sbjct: 187 AKSRRGPRGQSRFKGVCITRAGKWRAVICEWLAAVAEFLHNHIGRRQKYLGVFDSEVQAAVAYNESAKQFFGAEAKLN 264
BLAST of mRNA_P-wetherbeei_contig7050.1.1 vs. uniprot
Match: A0A836CI56_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI56_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 1.570e-14 Identity = 42/63 (66.67%), Postives = 51/63 (80.95%), Query Frame = 1
Query: 1366 RRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFESELEAASAYDVAAVLHFGAGAKLNF 1554
RRG +G+S ++GVC+TR GKWRAVIY RKQ YLGVFESE++AA A+D AA HFGA A +NF
Sbjct: 22 RRGRKGKSIYRGVCVTREGKWRAVIYKERKQLYLGVFESEIDAAKAHDRAARYHFGAQAMVNF 84
BLAST of mRNA_P-wetherbeei_contig7050.1.1 vs. uniprot
Match: D7FLT6_ECTSI (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLT6_ECTSI) HSP 1 Score: 84.3 bits (207), Expect = 2.450e-13 Identity = 44/62 (70.97%), Postives = 50/62 (80.65%), Query Frame = 1
Query: 1366 RRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFESELEAASAYDVAAVLHFGAGAKLN 1551
RRGP GQS FKGVCIT AG WRAVIY+ RKQKYLGVF+SE +AA AYD AA +H G++LN
Sbjct: 304 RRGPPGQSSFKGVCITPAGTWRAVIYVDRKQKYLGVFDSEFDAARAYDAAARVHCP-GSQLN 364
BLAST of mRNA_P-wetherbeei_contig7050.1.1 vs. uniprot
Match: A0A836CH07_9STRA (AP2/ERF domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH07_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 9.220e-13 Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 1
Query: 1393 FKGVCITRAGKWRAVIYIGRKQKYLGVFESELEAASAYDVAAVLHFGAGAKLNF 1554
++GVC+TR GKWRAVIY RKQ YLGVFESE++AA A+D AA HFG A +NF
Sbjct: 1 YRGVCVTREGKWRAVIYKERKQLYLGVFESEVDAAKAHDRAARQHFGDQAMVNF 54
BLAST of mRNA_P-wetherbeei_contig7050.1.1 vs. uniprot
Match: A0A6H5KY97_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY97_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 2.570e-12 Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1
Query: 1366 RRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFESELEAASAYDVAAVLHFGAGAKLN 1551
RRGP GQS FKGVCIT AG WRAVIY+ RKQKYLGVF+SE +AA AYD AA ++ G++LN
Sbjct: 421 RRGPPGQSSFKGVCITPAGTWRAVIYVDRKQKYLGVFDSEFDAARAYDAAARVYCP-GSQLN 481 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7050.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig7050.1.1 >prot_P-wetherbeei_contig7050.1.1 ID=prot_P-wetherbeei_contig7050.1.1|Name=mRNA_P-wetherbeei_contig7050.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=723bp MSRTKCTAANANVDQSGAIAVPYPRTGDGKDAATAPCNAVGACGAFVRPSback to top mRNA from alignment at P-wetherbeei_contig7050:2..3217- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig7050.1.1 ID=mRNA_P-wetherbeei_contig7050.1.1|Name=mRNA_P-wetherbeei_contig7050.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3216bp|location=Sequence derived from alignment at P-wetherbeei_contig7050:2..3217- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig7050:2..3217- >mRNA_P-wetherbeei_contig7050.1.1 ID=mRNA_P-wetherbeei_contig7050.1.1|Name=mRNA_P-wetherbeei_contig7050.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2169bp|location=Sequence derived from alignment at P-wetherbeei_contig7050:2..3217- (Phaeothamnion wetherbeei SAG_119_79)back to top |