mRNA_P-wetherbeei_contig7034.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7034.1.1
Unique NamemRNA_P-wetherbeei_contig7034.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7034.1.1 vs. uniprot
Match: A0A6H5JL02_9PHAE (ST protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL02_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 4.760e-12
Identity = 50/179 (27.93%), Postives = 96/179 (53.63%), Query Frame = 3 
Query:  660 REPRGQYISRYEYFIHQRTQVTLEDYL-MGEEEVDYDLQ--------CGSLGIHDEAALEEFLEKYLSTFTLIIPTEVYEEGMVLLAGLMGWPLTDVMYETRNTNTGKTYVTYRDGTLAEIEKGPAFDELHPVAQERLSAAVSMDDRLYAAAWDFYAAIKANYGVEKLQREVEEFQKLQ 1169
            R  R  ++S Y Y++    Q++++ +     E+  +  Q        C   GIH+   L +F+E  L  F L++ TE ++EG++++  ++GW + D+ Y +R   T K   T  DG   E++  P +++L    Q+R+ A  ++D  LY AA   Y  +KA   +E ++ ++++F++LQ
Sbjct:  323 RSQRSHFLSYYYYYVQPEVQLSVQHFFGSNREDPQFQYQRRRLTNPLCAEFGIHNGEQLAQFIETELPDFRLVLLTEAFDEGLMMMRRILGWEMIDMTY-SRMMET-KAGGTRWDGK--ELKNVPRWEDLPTWVQDRVDANTALDKMLYDAAVRHYNQMKAVAAIE-IEDDLKQFEELQ 496
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BLAST of mRNA_P-wetherbeei_contig7034.1.1 vs. uniprot
Match: D7FI84_ECTSI (Sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI84_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 5.410e-12
Identity = 51/187 (27.27%), Postives = 94/187 (50.27%), Query Frame = 3 
Query:  660 REPRGQYISRYEYFIHQRTQVTLEDYLMGEEEVDYDLQ----------CGSLGIHDEAALEEFLEKYLSTFTLIIPTEVYEEGMVLLAGLMGWPLTDVMYETRNTNTGKTYVTYRDGTLAEIEKGPAFDELHPVAQERLSAAVSMDDRLYAAAWDFYAAIKANYGVEKLQREVEEFQKLQANFGNII 1190
            R  R  ++S Y Y++    Q++++ +  G    D   Q          C   GIH+   L +F+E  L  F L++ TE ++EG++++  ++GW + D+ Y +R   T K      DG   E++  P +++L    Q+R+ A  ++D  LY AA   Y  +KA   +E ++ +++EF +LQ      +
Sbjct:  134 RSQRSHFLSYYYYYVQPEVQLSVQHFF-GSNRQDPQFQYQRRRLTNPLCAEFGIHNGEQLAQFIETELPDFRLVLLTEAFDEGLMMMRRILGWEMIDMTY-SRMMET-KAGGARWDGK--ELKNVPHWEDLPTWVQDRVDANTALDKMLYDAAVSHYNKMKAVAAME-IEDDLKEFDELQKTVNGYL 314
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BLAST of mRNA_P-wetherbeei_contig7034.1.1 vs. uniprot
Match: A0A6G6CDJ0_SACJA (Sulfotransferase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A6G6CDJ0_SACJA)

HSP 1 Score: 74.3 bits (181), Expect = 1.710e-10
Identity = 48/175 (27.43%), Postives = 90/175 (51.43%), Query Frame = 3 
Query:  660 REPRGQYISRYEYFIHQRTQVTLEDYLMGEEEVD-----YDLQCGSLGIHDEAALEEFLEKYLSTFTLIIPTEVYEEGMVLLAGLMGWPLTDVMYETRNTNTGKTYVTYRDGTLAEIEKGPAFDELHPVAQERLSAAVSMDDRLYAAAWDFYAAIKANYGVEKLQREVEEFQKLQ 1169
            REPR  +IS Y YF+   T+++LED+LM     D      +     +G+     +E+      S+F +I+ T+ ++EG+++L  L+GW + D+ Y   +          + G +A +++ P+F +L    + ++ +   +D  +Y+AA   Y   +     + +  +VEEFQKLQ
Sbjct:  225 REPREHFISYYYYFVEPATKLSLEDFLMKSHGGDDFALLKNPLASEVGVTTFHNMEQLFVNDFSSFRMILLTDRFDEGLMVLRRLLGWSMIDMTYMAMDET--------KAGDIAVVDR-PSFHDLPEKVRNKIDSLTELDQMVYSAAQVLYDK-RLRPMSDVIGADVEEFQKLQ 389
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BLAST of mRNA_P-wetherbeei_contig7034.1.1 vs. uniprot
Match: D8LRU8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRU8_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 8.090e-7
Identity = 49/193 (25.39%), Postives = 85/193 (44.04%), Query Frame = 3 
Query:  633 FVSVLWGTCREPRGQYISRYEYFIHQRTQVTLEDYLMGEEEVD-------YDLQCGSLGIHDEAALEEFLEKYLSTFTLIIPTEVYEEGMVLLAGLMGWPLTDVMYETRNTNTGKTYVTYRDGTLAEIEKGPAFDELHPVAQERLSAAVSMDDRLYAAAWDFYAAIKANYGVEKLQREVEEFQKLQANFGNII 1190
            FV+V+    REPR   +S Y YF+  +TQ T+ ++L   +          ++      G+     L   LEK L    +++ TE ++EG+++L  L+ W + D+ Y     +  KT    R      +   P F++L    Q+ +     +D  LY AA   Y   +       L+ ++ EF +LQ   G  +
Sbjct:  194 FVTVV----REPRSHLLSYYYYFLQPQTQKTIGEFLTQAKHPRDPIHRRLFNPLSAEFGVKKRQDLRYVLEKALPNAKMVLLTEEFDEGLMVLRRLLRWEMVDMTY----VSVYKTTAGARRYDGKPLVNAPRFEDLPVQVQQIIDQHTELDRVLYNAAKLEYEKRRDLIPPPLLEEDLVEFHELQRTVGAYL 378
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7034.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JL02_9PHAE4.760e-1227.93ST protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
D7FI84_ECTSI5.410e-1227.27Sulfotransferase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6G6CDJ0_SACJA1.710e-1027.43Sulfotransferase n=1 Tax=Saccharina japonica TaxID... [more]
D8LRU8_ECTSI8.090e-725.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7034contigP-wetherbeei_contig7034:199..3221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G4H5
Preferred nameGAL3ST3
PFAMsGal-3-0_sulfotr
Model size1702
Max annot lvl2759|Eukaryota
KEGG rclassRC00007,RC00231
KEGG koko:K01019,ko:K09676
KEGG ReactionR04017,R05105,R10805
KEGG Pathwayko00565,ko00600,ko01100,map00565,map00600,map01100
KEGG ModuleM00067
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005975,GO:0005976,GO:0005996,GO:0006022,GO:0006029,GO:0006790,GO:0006807,GO:0008146,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009311,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016782,GO:0017076,GO:0019538,GO:0030166,GO:0030246,GO:0030309,GO:0030554,GO:0031224,GO:0032553,GO:0032555,GO:0032559,GO:0034645,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044425,GO:0050656,GO:0050694,GO:0050698,GO:0071704,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681
Exons5
Evalue3.2e-11
EggNOG OGs2CM97@1|root,2QPNT@2759|Eukaryota
EC2.8.2.11
Descriptiongalactosylceramide sulfotransferase activity
Cds size555
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7034.1.1prot_P-wetherbeei_contig7034.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7034 1198..2814 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186953.6199436-UTR-P-wetherbeei_contig7034:198..9171683186953.6199436-UTR-P-wetherbeei_contig7034:198..917Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7034 199..917 +
1683186953.6411138-UTR-P-wetherbeei_contig7034:1176..11971683186953.6411138-UTR-P-wetherbeei_contig7034:1176..1197Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7034 1177..1197 +
1683186953.703873-UTR-P-wetherbeei_contig7034:2814..32211683186953.703873-UTR-P-wetherbeei_contig7034:2814..3221Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7034 2815..3221 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186953.6521146-CDS-P-wetherbeei_contig7034:1197..13051683186953.6521146-CDS-P-wetherbeei_contig7034:1197..1305Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7034 1198..1305 +
1683186953.6652708-CDS-P-wetherbeei_contig7034:1614..17971683186953.6652708-CDS-P-wetherbeei_contig7034:1614..1797Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7034 1615..1797 +
1683186953.6820033-CDS-P-wetherbeei_contig7034:2294..24111683186953.6820033-CDS-P-wetherbeei_contig7034:2294..2411Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7034 2295..2411 +
1683186953.6924062-CDS-P-wetherbeei_contig7034:2667..28141683186953.6924062-CDS-P-wetherbeei_contig7034:2667..2814Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7034 2668..2814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7034.1.1

>prot_P-wetherbeei_contig7034.1.1 ID=prot_P-wetherbeei_contig7034.1.1|Name=mRNA_P-wetherbeei_contig7034.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=185bp
MGEEEVDYDLQCGSLGIHDEAALEEFLEKYLSTFTLIIPTEVYEEGMVLL
AGLMGWPLTDVMYETRNTNTGKTYVTYRDGTLAEIEKGPAFDELHPVAQE
RLSAAVSMDDRLYAAAWDFYAAIKANYGVEKLQREVEEFQKLQANFGNII
FGHRKGCMDIDNDWETCNPGAHWGAREYLDCYFG*
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mRNA from alignment at P-wetherbeei_contig7034:199..3221+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7034.1.1 ID=mRNA_P-wetherbeei_contig7034.1.1|Name=mRNA_P-wetherbeei_contig7034.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3023bp|location=Sequence derived from alignment at P-wetherbeei_contig7034:199..3221+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGGCGGACATCATGGTTCACCACGTCTCCGCAGCGGGAGCGTACTACG
ACGGTGACTTTGGGACAATGCAGCAGTACTACAAACAGGTAGAAAAGGCC
AGCAACGAAGAGAAATGCCTTCAGGGAACCGTTACCGCCGTTCCACACGA
GCATCACGCAAGGGGCTGCGAAATCGCTGGAGAAGAACCGTCTCGAGGGT
TATAACAACTTGACAGCACGGAAATTGCCTTTTTAAATGCGGCCGGCGCC
ACCGCGTTCCCCCCGTTGTCCTCTCGGCGACCGCTTGTGGTGTCCGCAGA
TTCTCTCGGACGAAAGACCCGTCCGCTTTGTCACGACGCTGCGGTGAGAC
CGACAGTAAATGCGTCCCGCGCGCCTGTCGCCGTTCCTGAGGCCTCGCAG
GATTCACCATGTTGTTTCGATATTGACTTTCCTTTACTTCCAGGAGAACC
CTCTGAAGTACTCAAATTTCGCTCTGTCTGCTTTGCCGGCACCGACAAGC
ATTGGTGACAGCGAGGTGGAGCACAGCTCTGCGGATGCCCCCGCCCGGTT
CTTCATCCGTCGCGCAACGGCGGAATCTAGTCACAACCGAAAAGGGCGTG
CTGCAACAAACAACACACGCTGACATTCCTTTTTTGTCTCCGTTCTTTGG
GGCACGTGCAGGGAGCCAAGAGGCCAGTACATATCTCGATATGAATACTT
CATTCATCAGCGGACGCAGGTGAACGCGCTCGCGTGGGTTTTGGTTGGGG
GGGGGGGGGGGGGGGTACGAGGTAGGAAGCAACGGAAGCGTGCTACCCAG
GAAGTGCCACCGGATGGACCCTGTCCTGCTGGACCGGACCGGACCGGACC
GGCATACATTCCCTCCACCGCTGTGCATCTGACAGGCTTTCCTTTGATCT
GGTGCCCGGCCTCTTCCGACTGCTTCTGCTTCCGCCGTCCTCGTTTTTGC
TTTTCTTCTTGCTGCCGGAGGGAGTCAGGTGACCCTTGAAGATTACCTTA
TGGGAGAAGAGGAAGTCGACTATGACCTTCAGTGCGGCAGCCTTGGCATT
CACGACGAAGCCGCCCTCGAAGAGTTCTTAGAGAAGTACCTTTCGACCTT
CACGCTGGTGAGCGACCCTCCTCTCCGTTCACAGCAGCCGGCGGCCAGGC
GGGCGGAGCTCACCGCCCGCTGGGGGTACTGTCCGCGCGCTTCCGAGGCC
GCTGTGCCCGAGGACGTTCTTTTGCGGCGGTGATGCCATCAAAAATGAAG
TTGGTCGACCTGGCCAGACACAGCTATATCGCATACCCTTCCGCTCCTTC
CCTCAAACAATTCCGAAACGCACCCAAAAGAGACCTTCTAAGGCTTCCGT
GGCGCACTCTTTCTTTGTGTTTTGGCGTTTTGCGTGCGCGCCCCGCGTCG
TGTCTGCTGCATGCAGATAATCCCGACGGAGGTCTACGAGGAAGGGATGG
TGCTCCTGGCGGGGCTGATGGGGTGGCCGCTGACGGACGTCATGTACGAG
ACGCGGAACACCAACACGGGCAAGACGTATGTCACGTACCGCGACGGGAC
GTTGGCGGAAATCGAGAAAGGTCCCGCTTTCGACGAACTCCATCCGGTTG
TGAGTCTACCTATTTACGTTGCCTGCTGGTTTGCATTACCTGCCTGCGAG
AGCGTACCCGGGAGAGGCAGTGGATGGGGTGGGGAGATGCGTTCGCAGCG
CTCCGTTCTCGCTTGCTCGGGGGCCGAGCGGCTGTGGCAGGAGGTGTCAG
ACAAGAAATGGCCATTCTGCGCCCGTGGTCTCGCCTTTTCTTCTACTCTG
TCATCGTGAGCGGGGGGCCGGCACGTGTTGAAAGGAGTTTCCATGTTGAT
GGCATTCTGACAGACCCTCCTCTCCTCGGGCCTAAGAGGCGAAGGAAGTA
AGCTGTACTTTTTCGAGCAACAGAACTTTTCTTGTCAGCCCCTCATGACA
CCTGCTTTTTGCCACCCCAGAAAGCCTCGTGGCTCGCCGGCCGCGCTTGT
TCACACAGAGTGGACCCTTCCCTTTCTGCCCCTGTTAATGCCGGCCGAGG
GTGGCTCCTCTTGTTCCCAATTTTCCGTTGGTGCATTTCTCTTCAGGCTC
AGGAGCGGCTGTCGGCAGCGGTAAGCATGGACGACAGATTGTACGCGGCG
GCTTGGGACTTTTATGCGGCCATCAAAGCGAACTACGGGGTGGAGAAGCT
GCAACGCGAAGTGGTGAGTTGGGAAAGAAACTGATGCGGGGCACAAGATG
TCTGGTTTTAGACCTTGGCAACTCGGGACCGTTGTTTCTGCTGCGTCGCC
GTGCCACGCGGGTTTTTTTGCCTTCGGTACTTTTACGCCGCGCAACATGT
CCTTCTTTGGGTTGCTCAAGTTTCTTGCTTTGTAACGGGACTTTTCTTTT
TGTTAACATTGCAGAGCTTTCTCCCTCGGCTGCCCCCTTCTTTCGTTGCT
CTGTTTCATCGACGGGCAGGAGGAATTTCAAAAGTTGCAGGCCAACTTTG
GAAACATCATCTTCGGGCATCGCAAGGGTTGCATGGACATCGACAATGAC
TGGGAGACCTGCAACCCCGGCGCGCATTGGGGAGCCCGCGAGTATCTGGA
CTGCTACTTCGGCTAGTCCGTGCGGCAGCGCAAGCGGGCACGTGTGTAGC
CATCAAGCTAGCGAGAGTATTCCCCCAAGAAATGTTTACCTTACTCCCTT
CATCCGTTCCATCTGGAGTTGGGTTACTCCTTTGAGTTCCTTGCCGTTGT
GATCAAGATCTGCGCCTCCGTTGCCTCCGGCGCACCTCACGTGCCCACCC
GTCGCGCCCATGGTGTCAACGACCGAGCAATGCCGAACCGGGGCGTGCGA
CGAGAGTGCTAGGCGCGCCCGCCATACGTGCGGGATAGTGTGGCTCTTGA
GTGGCTTTGCTGACAGTGCCCTGTACACTGTTGTGCGTGCGGCGGCGTTG
CCGAGGGCGTGGCGGCGCCTGGTTTTGTGTTTAGGATCTGGGTTGGAGGA
GGAAGCTTTTTTCGCCGGATGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7034:199..3221+

>mRNA_P-wetherbeei_contig7034.1.1 ID=mRNA_P-wetherbeei_contig7034.1.1|Name=mRNA_P-wetherbeei_contig7034.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=555bp|location=Sequence derived from alignment at P-wetherbeei_contig7034:199..3221+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGAGAAGAGGAAGTCGACTATGACCTTCAGTGCGGCAGCCTTGGCAT
TCACGACGAAGCCGCCCTCGAAGAGTTCTTAGAGAAGTACCTTTCGACCT
TCACGCTGATAATCCCGACGGAGGTCTACGAGGAAGGGATGGTGCTCCTG
GCGGGGCTGATGGGGTGGCCGCTGACGGACGTCATGTACGAGACGCGGAA
CACCAACACGGGCAAGACGTATGTCACGTACCGCGACGGGACGTTGGCGG
AAATCGAGAAAGGTCCCGCTTTCGACGAACTCCATCCGGTTGCTCAGGAG
CGGCTGTCGGCAGCGGTAAGCATGGACGACAGATTGTACGCGGCGGCTTG
GGACTTTTATGCGGCCATCAAAGCGAACTACGGGGTGGAGAAGCTGCAAC
GCGAAGTGGAGGAATTTCAAAAGTTGCAGGCCAACTTTGGAAACATCATC
TTCGGGCATCGCAAGGGTTGCATGGACATCGACAATGACTGGGAGACCTG
CAACCCCGGCGCGCATTGGGGAGCCCGCGAGTATCTGGACTGCTACTTCG
GCTAG
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