mRNA_P-wetherbeei_contig7032.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7032.1.1
Unique NamemRNA_P-wetherbeei_contig7032.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7032.1.1 vs. uniprot
Match: B6UYK6_MUSPR (Chitinase n=8 Tax=Musa TaxID=4640 RepID=B6UYK6_MUSPR)

HSP 1 Score: 218 bits (556), Expect = 4.680e-66
Identity = 124/277 (44.77%), Postives = 165/277 (59.57%), Query Frame = 1
Query:  130 YTWCGGGAPNPSPSPAVIXXXXXXXXXXXPMPPTGGG-IGKYITATMFANMFPLITPGSSLYNTACTGAGFFTYQSFITAAAVYPAFGMSSDDATNKREIAAFLAQASQETNGANA----GQFNGGLCFKDELGQSTNPGYCVTSTEFPCVAGQYYFGRGPLQLSYNFNYGPAGRALGVDLLANPGAVSNDPILAFKTSLWFWMTPQAPKPSCHDAMIGLTSPS----------GFGATTKVINGGVLQCGNGNPTRSAAEMQKIGYYQAYETVFGL 915
            Y WCG    N  P                P  P+GGG +G  I++++F  M           + AC G GF+TY +FI AA  +  FG + DDAT KREIAAFLAQ S ET G  A    G +  G CF  E   S++  YCV S+++PC AG+ Y+GRGP+Q+S+N+NYGPAGRA+G DLL NP  V+ D  ++FKT+LWFWMTPQ+PKPSCH+ + G  +PS          G+G TT +INGG L+CG G+  R A    +IG+Y+ Y  + G+
Sbjct:   40 YGWCG----NTDPYCGQGCQSQCTGSTPSPSTPSGGGSVGSIISSSLFEQML------KHRNDAACPGNGFYTYNAFIAAANSFSGFGTTGDDATKKREIAAFLAQTSHETTGGWATAPDGPYAWGYCFVQEQNPSSD--YCVASSQWPCAAGKKYYGRGPIQISFNYNYGPAGRAIGSDLLNNPDLVATDATISFKTALWFWMTPQSPKPSCHNVITGGWTPSNADRAAGRLPGYGVTTNIINGG-LECGKGSDARVA---DRIGFYKRYCDLLGV 300          
BLAST of mRNA_P-wetherbeei_contig7032.1.1 vs. uniprot
Match: I7AXR1_OLEEU (Putative chitinase I n=2 Tax=Olea europaea TaxID=4146 RepID=I7AXR1_OLEEU)

HSP 1 Score: 216 bits (551), Expect = 5.650e-66
Identity = 117/242 (48.35%), Postives = 152/242 (62.81%), Query Frame = 1
Query:  235 GGIGKYITATMFANMFPLITPGSSLYNTACTGAGFFTYQSFITAAAVYPAFGMSSDDATNKREIAAFLAQASQETNGANA----GQFNGGLCFKDELGQSTNPGYCVTSTEFPCVAGQYYFGRGPLQLSYNFNYGPAGRALGVDLLANPGAVSNDPILAFKTSLWFWMTPQAPKPSCHDAMIGLTSPS----------GFGATTKVINGGVLQCGNG-NPTRSAAEMQKIGYYQAYETVFGL 915
            GG+   I+ ++F  M      G+      C   GF+TY++FI AA  + AFG + D  T KREIAAFLAQ S ET G  A    G ++ G C+K E G    P YCV S E+PC  G+ YFGRGP+Q+SYN+NYGPAG+A+G DLL +P AV+NDP ++FKT+ WFWMTPQAPKPSCHDAM G+  PS          G+G  T +INGG+ +CG G NP        +IG+Y+ Y  + G+
Sbjct:   21 GGVDSIISKSLFDEMLKHRNDGN------CPANGFYTYEAFIAAANSFGAFGTTGDTDTRKREIAAFLAQTSHETTGGWASAPDGPYSWGYCYKQEQGNP--PDYCVASQEWPCAPGKKYFGRGPIQISYNYNYGPAGKAIGSDLLNDPDAVANDPTISFKTAFWFWMTPQAPKPSCHDAMSGVWKPSAADTAAGRVPGYGVVTNIINGGI-ECGKGSNPQME----DRIGFYKRYCDLLGV 249          
BLAST of mRNA_P-wetherbeei_contig7032.1.1 vs. uniprot
Match: CHI2_TOBAC (Endochitinase B n=24 Tax=Solanaceae TaxID=4070 RepID=CHI2_TOBAC)

HSP 1 Score: 218 bits (555), Expect = 8.620e-66
Identity = 117/248 (47.18%), Postives = 154/248 (62.10%), Query Frame = 1
Query:  217 PMPPTGGGIGKYITATMFANMFPLITPGSSLYNTACTGAGFFTYQSFITAAAVYPAFGMSSDDATNKREIAAFLAQASQETNGANA----GQFNGGLCFKDELGQSTNPG-YCVTSTEFPCVAGQYYFGRGPLQLSYNFNYGPAGRALGVDLLANPGAVSNDPILAFKTSLWFWMTPQAPKPSCHDAMIGLTSPS----------GFGATTKVINGGVLQCGNGNPTRSAAEMQKIGYYQAYETVFGL 915
            P PP GG +G  I+++MF  M           + AC G GF++Y +FI AA  +P FG S D    KREIAAF AQ S ET G  A    G +  G C+  E G   +PG YC  S ++PC  G+ YFGRGP+Q+S+N+NYGP GRA+GVDLL NP  V+ DP+++FK++LWFWMTPQ+PKPSCHD +IG   PS          GFG  T +INGG L+CG G  +R      +IG+Y+ Y ++ G+
Sbjct:   67 PTPPGGGDLGSIISSSMFDQML------KHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQG---SPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGG-LECGRGTDSRV---QDRIGFYRRYCSILGV 301          
BLAST of mRNA_P-wetherbeei_contig7032.1.1 vs. uniprot
Match: A0A7I8K4V0_SPIIN (Chitinase n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8K4V0_SPIIN)

HSP 1 Score: 218 bits (555), Expect = 9.410e-66
Identity = 116/242 (47.93%), Postives = 159/242 (65.70%), Query Frame = 1
Query:  235 GGIGKYITATMFANMFPLITPGSSLYNTACTGAGFFTYQSFITAAAVYPAFGMSSDDATNKREIAAFLAQASQETNGANA----GQFNGGLCFKDELGQSTNPG-YCVTSTEFPCVAGQYYFGRGPLQLSYNFNYGPAGRALGVDLLANPGAVSNDPILAFKTSLWFWMTPQAPKPSCHDAMIGLTSPS----------GFGATTKVINGGVLQCGNGNPTRSAAEMQKIGYYQAYETVFGL 915
            GG+   I+ T+F  M           + AC    F+TY +F+TAA  +PAFG + D  T +REIAAFL Q S ET G  A    G ++ G CFK+E+G   NPG YC  ST++PCV+G+ Y+GRGP+Q+SYN+NYGPAG+A+GV+LL NP  V++DP+++FKT+LWFWMTPQ+PKPS HD + G  +PS          G+G  T +INGG L+CG+G+  R A    +IG+Y  Y  +FG+
Sbjct:   84 GGVASIISQTLFDQML------LHRNDAACPANNFYTYSAFVTAANSFPAFGTTGDLTTRQREIAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEVG---NPGDYCQPSTQWPCVSGKKYYGRGPIQISYNYNYGPAGQAIGVNLLNNPDLVTSDPVVSFKTALWFWMTPQSPKPSSHDVITGGWTPSAADVAAGRLPGYGVITNIINGG-LECGHGSDNRVA---DRIGFYNRYCNIFGV 312          
BLAST of mRNA_P-wetherbeei_contig7032.1.1 vs. uniprot
Match: A0A6G1EE78_9ORYZ (Chitinase n=2 Tax=Oryza TaxID=4527 RepID=A0A6G1EE78_9ORYZ)

HSP 1 Score: 218 bits (556), Expect = 9.420e-66
Identity = 113/214 (52.80%), Postives = 145/214 (67.76%), Query Frame = 1
Query:  319 ACTGAGFFTYQSFITAAAVYPAFGMSSDD-ATNKREIAAFLAQASQETNG----ANAGQFNGGLCFKDELGQSTNPGYCVTSTEFPCVAGQYYFGRGPLQLSYNFNYGPAGRALGVDLLANPGAVSNDPILAFKTSLWFWMTPQAPKPSCHDAMIGLTSPS----------GFGATTKVINGGVLQCGNGNPTRSAAEMQKIGYYQAYETVFGL 915
            AC  +GF+TY +F+TAAA +P F  + DD  T KRE+AAFLAQ S ET G    A  G F+ G CFK+E+G + +  YCV   E+PC  G+ YFGRGP+QLSYN+NYGPAG A+G DLL NP  V+ DP+++FKT+LWFWMTPQAPKPSCHD + G  +P+          G+G  T +INGG L+CG+G   R A    +IG+YQ Y  V G+
Sbjct:  110 ACPASGFYTYDAFVTAAAAFPEFAATGDDDETRKREVAAFLAQTSHETTGGWPTAPDGPFSWGYCFKEEIGPTAD--YCVPIAEWPCAPGKKYFGRGPIQLSYNYNYGPAGEAIGEDLLNNPELVATDPVVSFKTALWFWMTPQAPKPSCHDVITGQWTPTSADNAAGRVPGYGVITNIINGG-LECGHGPDDRVA---NRIGFYQRYCDVLGI 317          
BLAST of mRNA_P-wetherbeei_contig7032.1.1 vs. uniprot
Match: B8QVI1_ZEAMP (Chitinase (Fragment) n=1 Tax=Zea mays subsp. parviglumis TaxID=76912 RepID=B8QVI1_ZEAMP)

HSP 1 Score: 217 bits (552), Expect = 2.040e-65
Identity = 112/247 (45.34%), Postives = 153/247 (61.94%), Query Frame = 1
Query:  217 PMPPTGGGIGKYITATMFANMFPLITPGSSLYNTACTGAGFFTYQSFITAAAVYPAFGMSSDDATNKREIAAFLAQASQETNGANA----GQFNGGLCFKDELGQSTNPGYCVTSTEFPCVAGQYYFGRGPLQLSYNFNYGPAGRALGVDLLANPGAVSNDPILAFKTSLWFWMTPQAPKPSCHDAMIGLTSPS----------GFGATTKVINGGVLQCGNGNPTRSAAEMQKIGYYQAYETVFGL 915
            P PP+ GG+   I  ++F  M           + AC   GF+TY  FI AA  +P FG +      KRE+AAFLAQ S ET G  A    G +  G CFK+E G ++ P YC  S ++PC AG+ Y+GRGP+Q+SYN+NYGPAG+A+G  +LANP  V+ DP ++F+T++WFWMTPQ+PKPSCHD M G  +PS          G+G  T +INGG L+CG+G  +R A    +IG+Y+ Y  + G+
Sbjct:   66 PNPPSSGGVASIIPESLFNQML------LHRNDAACPANGFYTYAGFIAAANAFPGFGTTGAPDVQKRELAAFLAQTSHETTGGWATAPDGPYAWGYCFKEEQGGASGPDYCEPSAQWPCAAGKKYYGRGPIQISYNYNYGPAGQAIGAGILANPDLVATDPTVSFETAVWFWMTPQSPKPSCHDVMTGQWTPSAADTAANRLPGYGVVTNIINGG-LECGHGADSRVA---DRIGFYKRYCDLLGV 302          
BLAST of mRNA_P-wetherbeei_contig7032.1.1 vs. uniprot
Match: A0A5C7HSX1_9ROSI (Chitin-binding type-1 domain-containing protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7HSX1_9ROSI)

HSP 1 Score: 217 bits (552), Expect = 2.360e-65
Identity = 125/289 (43.25%), Postives = 162/289 (56.06%), Query Frame = 1
Query:  112 CASVPSY------TWCGGGAPNPSPSPAVIXXXXXXXXXXXPMPPTGGGIGKYITATMFANMFPLITPGSSLYNTACTGAGFFTYQSFITAAAVYPAFGMSSDDATNKREIAAFLAQASQETNG----ANAGQFNGGLCFKDELGQSTNPG-YCVTSTEFPCVAGQYYFGRGPLQLSYNFNYGPAGRALGVDLLANPGAVSNDPILAFKTSLWFWMTPQAPKPSCHDAMIGLTSPS----------GFGATTKVINGGVLQCGNGNPTRSAAEMQKIGYYQAYETVFGL 915
            C S P Y      + CGG    P+PS                    GG IG  I+   F  M       +      C   GF++Y +FI AA  +PAF  + D  T KRE+AAFLAQ S ET G    A  G ++ G CFK E G   NPG YCV + ++PC  G+ YFGRGP+Q+SYN+NYGPAGRA+  DLL NP AV+NDP ++FKT+ WFWMTPQ+PKPSCHD +IG   PS          G+G  T +INGG+ +CG G+  + A    +IG+Y+ Y  + G+
Sbjct:   50 CGSTPDYCTNGCQSQCGGSPSTPTPS------------------GVGGDIGSIISRDRFEQMLKHRNDAN------CPARGFYSYDAFIAAAKSFPAFATNGDADTRKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKQEQG---NPGDYCVPNQQWPCAPGKKYFGRGPIQISYNYNYGPAGRAINADLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVIIGAWRPSAADTQAGRVPGYGVITNIINGGI-ECGKGSNPQMA---DRIGFYKRYCDILGI 307          
BLAST of mRNA_P-wetherbeei_contig7032.1.1 vs. uniprot
Match: Q6SPQ7_BAMOL (Chitinase n=1 Tax=Bambusa oldhamii TaxID=58923 RepID=Q6SPQ7_BAMOL)

HSP 1 Score: 217 bits (552), Expect = 3.250e-65
Identity = 139/311 (44.69%), Postives = 179/311 (57.56%), Query Frame = 1
Query:   43 CGSCTNCYYSPTLACFSGWTQAQCASVPSY------TWCGGGAPNPSPSPAVIXXXXXXXXXXXPMPPTGGGIGKYITATMFANMFPLITPGSSLYNTACTGAGFFTYQSFITAAAVYPAFGMSSDDATNKREIAAFLAQASQETNG----ANAGQFNGGLCFKDELGQSTNPGYCVTSTEFPCVAGQYYFGRGPLQLSYNFNYGPAGRALGVDLLANPGAVSNDPILAFKTSLWFWMTPQAPKPSCHDAMIGLTSPS----------GFGATTKVINGGVLQCGNGNPTRSAAEMQKIGYYQAYETVFGL 915
            CGS       P   C S W    C S   Y      + C G  P+P P+P   XXXXXXXXXXX       G+   ++  +F  +           + AC   GF+TY +F+ AA  +P FG + DD T KRE+AAFL Q S ET G    A  G ++ G CFK+E+G +    YCV STE+PC   + YFGRGP+QLSYN+NYGPAG+A+G DLL NP  V+ DP+++FKT+LWFWMTPQAPKPSCHD   G  +PS          G+G  T +INGG L+CG G   R    + +IG+YQ Y  + G+
Sbjct:   23 CGSQAGGATCPDCLCCSQW--GYCGSTADYCGDGCQSQCDGCGPSPVPTPXXXXXXXXXXXXXX------XGVASIVSRDLFEQLL------LHRNDPACPAKGFYTYDAFVAAADAFPDFGTTGDDETRKREVAAFLGQTSHETTGGWPTAPGGPYSWGYCFKEEIGATAT--YCVPSTEWPCAPDKKYFGRGPIQLSYNYNYGPAGKAIGEDLLNNPELVAADPVVSFKTALWFWMTPQAPKPSCHDVATGQWTPSSVDIAAGRVPGYGVITNIINGG-LECGFGPDDRV---VNRIGFYQRYCDILGV 313          
BLAST of mRNA_P-wetherbeei_contig7032.1.1 vs. uniprot
Match: A0A3Q7JDI3_SOLLC (Chitin-binding type-1 domain-containing protein n=4 Tax=Solanum TaxID=4107 RepID=A0A3Q7JDI3_SOLLC)

HSP 1 Score: 216 bits (550), Expect = 4.580e-65
Identity = 130/293 (44.37%), Postives = 163/293 (55.63%), Query Frame = 1
Query:   94 GW---TQAQCASVPSYTWCGGGAPNPSPSPAVIXXXXXXXXXXXPMPPTGGGIGKYITATMFANMFPLITPGSSLYNTACTGAG-FFTYQSFITAAAVYPAFGMSSDDATNKREIAAFLAQASQETNG----ANAGQFNGGLCFKDELGQSTNPG-YCVTSTEFPCVAGQYYFGRGPLQLSYNFNYGPAGRALGVDLLANPGAVSNDPILAFKTSLWFWMTPQAPKPSCHDAMIGLTSPS----------GFGATTKVINGGVLQCGNGNPTRSAAEMQKIGYYQAYETVFGL 915
            GW   T   C S    + C GG P P P                    TGG +G  I+ +MF  M       S      C G   F++Y +FITAA  +P FG S D    KREIAAF AQ S ET G    A  G F  G CF  E G   NPG YC  S+++PC  G+ YFGRGP+Q+S+N+NYGP GRA+GVDLL NP  V+ DP+++FKT++WFWMTPQ+PKPSCHD +IG  +PS          GFG  T +INGG L+CG GN  R      +IG+Y+ Y  + G+
Sbjct:   46 GWCGNTNDHCGSGNCQSQCPGGGPGPGPV-------------------TGGDLGSVISNSMFDQMLKHRNENS------CQGKNNFYSYNAFITAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWPSAPDGPFAWGYCFLRERG---NPGDYCSPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKTAIWFWMTPQSPKPSCHDVIIGRWNPSAGDRSANRLPGFGVITNIINGG-LECGRGNDNRV---QDRIGFYRRYCGILGV 306          
BLAST of mRNA_P-wetherbeei_contig7032.1.1 vs. uniprot
Match: A0A7N0T0P7_KALFE (Chitin-binding type-1 domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0T0P7_KALFE)

HSP 1 Score: 216 bits (551), Expect = 6.110e-65
Identity = 117/245 (47.76%), Postives = 152/245 (62.04%), Query Frame = 1
Query:  226 PTGGGIGKYITATMFANMFPLITPGSSLYNTACTGAGFFTYQSFITAAAVYPAFGMSSDDATNKREIAAFLAQASQETNGANA----GQFNGGLCFKDELGQSTNPG-YCVTSTEFPCVAGQYYFGRGPLQLSYNFNYGPAGRALGVDLLANPGAVSNDPILAFKTSLWFWMTPQAPKPSCHDAMIGLTSPS----------GFGATTKVINGGVLQCGNGNPTRSAAEMQKIGYYQAYETVFGL 915
            P GG +   I+   F  M      G      AC    F+TY +FI AA  +  FG S D AT KRE+AAFLAQ S ET G  A    G ++ G C+K E G   NPG YCV S ++PC  G+ Y+GRGP+Q+SYN+NYGPAG+A+GV+LLANP  V+ DP ++FKT++WFWMTPQ+PKPSCH+ MIG   PS          G+G  T +INGG L+CG+G   R A    +IG+Y+ Y  + G+
Sbjct:   89 PGGGDVASLISRDTFNQMLKHRNDG------ACPARNFYTYDAFIAAARAFNGFGTSGDVATRKRELAAFLAQTSHETTGGWATAPDGPYSWGYCYKQEQG---NPGSYCVASQQWPCAPGKKYYGRGPMQISYNYNYGPAGQAIGVNLLANPDLVATDPTISFKTAIWFWMTPQSPKPSCHNVMIGSWQPSAADRAAGRVSGYGVVTNIINGG-LECGHGQDARVA---DRIGFYKRYCDILGV 320          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7032.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B6UYK6_MUSPR4.680e-6644.77Chitinase n=8 Tax=Musa TaxID=4640 RepID=B6UYK6_MUS... [more]
I7AXR1_OLEEU5.650e-6648.35Putative chitinase I n=2 Tax=Olea europaea TaxID=4... [more]
CHI2_TOBAC8.620e-6647.18Endochitinase B n=24 Tax=Solanaceae TaxID=4070 Rep... [more]
A0A7I8K4V0_SPIIN9.410e-6647.93Chitinase n=1 Tax=Spirodela intermedia TaxID=51605... [more]
A0A6G1EE78_9ORYZ9.420e-6652.80Chitinase n=2 Tax=Oryza TaxID=4527 RepID=A0A6G1EE7... [more]
B8QVI1_ZEAMP2.040e-6545.34Chitinase (Fragment) n=1 Tax=Zea mays subsp. parvi... [more]
A0A5C7HSX1_9ROSI2.360e-6543.25Chitin-binding type-1 domain-containing protein n=... [more]
Q6SPQ7_BAMOL3.250e-6544.69Chitinase n=1 Tax=Bambusa oldhamii TaxID=58923 Rep... [more]
A0A3Q7JDI3_SOLLC4.580e-6544.37Chitin-binding type-1 domain-containing protein n=... [more]
A0A7N0T0P7_KALFE6.110e-6547.76Chitin-binding type-1 domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7032contigP-wetherbeei_contig7032:1728..2909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4537.OPUNC05G13760.1
PFAMsChitin_bind_1,Glyco_hydro_19
Model size915
Max annot lvl35493|Streptophyta
KEGG rclassRC00467
KEGG koko:K01183,ko:K20547
KEGG ReactionR01206,R02334
KEGG Pathwayko00520,ko01100,ko04016,map00520,map01100,map04016
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.49e-69
EggNOG OGsCOG3979@1|root,KOG4742@2759|Eukaryota,37R5A@33090|Viridiplantae,3G9NC@35493|Streptophyta,3KSWE@4447|Liliopsida,3INA2@38820|Poales
EC3.2.1.14
DescriptionChitin recognition protein
Cds size915
COG categoryO
CAZyCBM18,GH18,GH19
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186953.5070856-CDS-P-wetherbeei_contig7032:1727..22981683186953.5070856-CDS-P-wetherbeei_contig7032:1727..2298Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7032 1728..2298 +
1683186953.5173657-CDS-P-wetherbeei_contig7032:2565..29091683186953.5173657-CDS-P-wetherbeei_contig7032:2565..2909Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7032 2566..2909 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7032.1.1prot_P-wetherbeei_contig7032.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7032 1728..2909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7032.1.1

>prot_P-wetherbeei_contig7032.1.1 ID=prot_P-wetherbeei_contig7032.1.1|Name=mRNA_P-wetherbeei_contig7032.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=305bp
VTAQPVTAPTTTSGCGSCTNCYYSPTLACFSGWTQAQCASVPSYTWCGGG
APNPSPSPAVIPTPKPVVSPTPPMPPTGGGIGKYITATMFANMFPLITPG
SSLYNTACTGAGFFTYQSFITAAAVYPAFGMSSDDATNKREIAAFLAQAS
QETNGANAGQFNGGLCFKDELGQSTNPGYCVTSTEFPCVAGQYYFGRGPL
QLSYNFNYGPAGRALGVDLLANPGAVSNDPILAFKTSLWFWMTPQAPKPS
CHDAMIGLTSPSGFGATTKVINGGVLQCGNGNPTRSAAEMQKIGYYQAYE
TVFGL
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mRNA from alignment at P-wetherbeei_contig7032:1728..2909+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7032.1.1 ID=mRNA_P-wetherbeei_contig7032.1.1|Name=mRNA_P-wetherbeei_contig7032.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1182bp|location=Sequence derived from alignment at P-wetherbeei_contig7032:1728..2909+ (Phaeothamnion wetherbeei SAG_119_79)
GTGACGGCCCAGCCGGTAACGGCTCCCACGACGACATCGGGATGTGGCAG CTGCACCAATTGTTACTACTCTCCAACCTTGGCCTGCTTCAGCGGCTGGA CGCAGGCGCAGTGCGCGTCCGTACCCAGTTACACCTGGTGCGGTGGCGGT GCACCTAACCCAAGTCCGTCGCCGGCGGTCATCCCGACCCCCAAGCCGGT CGTCTCGCCGACACCGCCGATGCCACCCACCGGCGGCGGCATTGGCAAGT ACATAACGGCCACCATGTTTGCCAACATGTTTCCGCTTATCACTCCGGGC AGTTCGCTCTACAACACGGCGTGCACCGGCGCCGGCTTCTTCACGTATCA GTCCTTCATCACGGCCGCCGCGGTGTACCCGGCGTTCGGCATGTCGAGCG ATGATGCCACCAACAAGCGCGAGATCGCCGCTTTCCTGGCACAGGCCAGC CAGGAGACCAATGGCGCCAACGCCGGCCAGTTCAACGGCGGGCTGTGCTT CAAGGACGAGCTCGGACAGAGCACCAACCCGGGGTACTGCGTCACCTCCA CTGAGTTCCCTTGTGTCGCAGGTCAGTTTCTGTTTTCTTCGTTGTGTTCG TGTTCGAGGTCAGACTTTTCCTTTTCATTAGGTCATATAGAGAGGAATAT TAGGGAGTGGACAAGCAGCCCATTCTCTGCTAGCCAGTGCTGCTCCATAA TGCCATTTTTTTTGGCAGTGCTAGCGTATCTCGAACAGTATACGGAGTGA CCTGACGCTCCTCTTATTCCCTCTGCCGTCACCGCTGCGGCCGCTATCGC CGCGACCGCCGCCACCGCCCGTCACTCTCACTCACCAGGGCAGTACTACT TCGGCCGCGGGCCGCTGCAGCTCTCCTACAACTTCAACTACGGCCCGGCC GGCCGGGCGCTCGGCGTCGACCTGCTGGCAAACCCGGGGGCAGTCAGCAA CGACCCGATCCTGGCTTTCAAGACGTCACTGTGGTTCTGGATGACGCCGC AGGCACCCAAGCCGTCGTGCCACGACGCCATGATCGGCCTCACGTCTCCA TCCGGCTTCGGCGCCACGACTAAGGTCATCAACGGGGGGGTGCTGCAATG CGGCAACGGCAACCCGACGCGCAGCGCCGCCGAAATGCAGAAGATCGGCT ACTACCAGGCGTACGAGACCGTGTTCGGGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7032:1728..2909+

>mRNA_P-wetherbeei_contig7032.1.1 ID=mRNA_P-wetherbeei_contig7032.1.1|Name=mRNA_P-wetherbeei_contig7032.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=915bp|location=Sequence derived from alignment at P-wetherbeei_contig7032:1728..2909+ (Phaeothamnion wetherbeei SAG_119_79)
GTGACGGCCCAGCCGGTAACGGCTCCCACGACGACATCGGGATGTGGCAG
CTGCACCAATTGTTACTACTCTCCAACCTTGGCCTGCTTCAGCGGCTGGA
CGCAGGCGCAGTGCGCGTCCGTACCCAGTTACACCTGGTGCGGTGGCGGT
GCACCTAACCCAAGTCCGTCGCCGGCGGTCATCCCGACCCCCAAGCCGGT
CGTCTCGCCGACACCGCCGATGCCACCCACCGGCGGCGGCATTGGCAAGT
ACATAACGGCCACCATGTTTGCCAACATGTTTCCGCTTATCACTCCGGGC
AGTTCGCTCTACAACACGGCGTGCACCGGCGCCGGCTTCTTCACGTATCA
GTCCTTCATCACGGCCGCCGCGGTGTACCCGGCGTTCGGCATGTCGAGCG
ATGATGCCACCAACAAGCGCGAGATCGCCGCTTTCCTGGCACAGGCCAGC
CAGGAGACCAATGGCGCCAACGCCGGCCAGTTCAACGGCGGGCTGTGCTT
CAAGGACGAGCTCGGACAGAGCACCAACCCGGGGTACTGCGTCACCTCCA
CTGAGTTCCCTTGTGTCGCAGGGCAGTACTACTTCGGCCGCGGGCCGCTG
CAGCTCTCCTACAACTTCAACTACGGCCCGGCCGGCCGGGCGCTCGGCGT
CGACCTGCTGGCAAACCCGGGGGCAGTCAGCAACGACCCGATCCTGGCTT
TCAAGACGTCACTGTGGTTCTGGATGACGCCGCAGGCACCCAAGCCGTCG
TGCCACGACGCCATGATCGGCCTCACGTCTCCATCCGGCTTCGGCGCCAC
GACTAAGGTCATCAACGGGGGGGTGCTGCAATGCGGCAACGGCAACCCGA
CGCGCAGCGCCGCCGAAATGCAGAAGATCGGCTACTACCAGGCGTACGAG
ACCGTGTTCGGGCTG
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