mRNA_P-wetherbeei_contig7031.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig7031.1.1 vs. uniprot
Match: A0A6H5LLH5_9PHAE (RF_PROK_I domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLH5_9PHAE) HSP 1 Score: 274 bits (701), Expect = 3.170e-86 Identity = 155/288 (53.82%), Postives = 186/288 (64.58%), Query Frame = 1
Query: 1 PRVSLAATVP---------ATGAAE--TEVGDVRRELAALKERLAANAELLDDAKLAGELEYLEGVSGEDGFWDDPAAARAALARLAAVRAQAERSRTWRSWVEDAQTAVELICDAGGGDGTGGXXXXXXXXXXXXXXXXXXXXXKEGMAALCRLRRDLDAWELEKLLSGPHDAAGCRLSIQAGAGGTEAQDWAEMLCRMYQRFCQRRGLRLRVVDKEDGEVAGIKSCTMEVEGRLAYGLLAGEKGTHRLVRLSPFNAQAKRQTSFAGVETFPILEEDDLRSVKTGEG 831
P V AA P A GAA +VGDVRR L++ +ERL N +L D+A+L GELEYLEGVS E FW+D +AR L L ++ Q +R WR W DA+T +EL + G D E AL L+RDLDAWE+++LLSG +D GCRL+I AGAGGTEAQDWAEML RMY RF QRRG + ++V++E GEVAGIKSC M+VEG AYG LAGEKGTHRLVR SPFNAQAKRQTSFAGVE+FPI+E+DDL + EG
Sbjct: 56 PAVQRAAAAPRSTPVRPRTALGAANLAVDVGDVRRALSSARERLEKNRQLFDEARLEGELEYLEGVSSEAEFWNDANSARKTLGDLNRLKLQLDRLYRWRGWEADAETVIELCGEEEGDD------------------EETAAMLDEATEALQLLQRDLDAWEMQQLLSGKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKIVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEG 325
BLAST of mRNA_P-wetherbeei_contig7031.1.1 vs. uniprot
Match: D7FJS9_ECTSI (Peptide chain release factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS9_ECTSI) HSP 1 Score: 282 bits (722), Expect = 3.280e-86 Identity = 156/279 (55.91%), Postives = 188/279 (67.38%), Query Frame = 1
Query: 1 PRVSLAATVPATGAAE--TEVGDVRRELAALKERLAANAELLDDAKLAGELEYLEGVSGEDGFWDDPAAARAALARLAAVRAQAERSRTWRSWVEDAQTAVELICDAGGGDGTGGXXXXXXXXXXXXXXXXXXXXXKEGMAALCRLRRDLDAWELEKLLSGPHDAAGCRLSIQAGAGGTEAQDWAEMLCRMYQRFCQRRGLRLRVVDKEDGEVAGIKSCTMEVEGRLAYGLLAGEKGTHRLVRLSPFNAQAKRQTSFAGVETFPILEEDDLRSVKTGEG 831
PR++ A GAA+ +VGDVRR L++ +ERL N +L D+AKL GELEYLEGVS E FW+D +AR L L ++ Q +R WR W DA+T +EL + GGD E M AL L+RDLDAWEL++LLSG +D GCRL+I AGAGGTEAQDWAEML RMY RF QRRG + ++V++E GEVAGIKSC M+VEG AYG LAGEKGTHRLVR SPFNAQAKRQTSFAGVE+FPI+E+DDL + EG
Sbjct: 67 PRLTPVRPRTALGAAKLAVDVGDVRRGLSSARERLGKNRQLFDEAKLEGELEYLEGVSSEAEFWNDANSARKTLGDLNRLKLQLDRLHRWRGWEADAETVIELCGEEEGGD------------------EETVAMLDEAMEALQLLQRDLDAWELQQLLSGKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEG 327
BLAST of mRNA_P-wetherbeei_contig7031.1.1 vs. uniprot
Match: A0A835Z7S5_9STRA (RF_PROK_I domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7S5_9STRA) HSP 1 Score: 240 bits (612), Expect = 2.880e-74 Identity = 130/238 (54.62%), Postives = 157/238 (65.97%), Query Frame = 1
Query: 118 LDDAKLAGELEYLEGVSGEDGFWDDPAAARAALARLAAVRAQAERSRTWRSWVEDAQTAVELICDAGGGDGTGGXXXXXXXXXXXXXXXXXXXXXKEGMAALCRLRRDLDAWELEKLLSGPHDAAGCRLSIQAGAGGTEAQDWAEMLCRMYQRFCQRRGLRLRVVDKEDGEVAGIKSCTMEVEGRLAYGLLAGEKGTHRLVRLSPFNAQAKRQTSFAGVETFPILEEDDLRSVKTGEG 831
+D KL GEL YLEGV E GFWDD AAAR LA +++Q +R W +W D ++A+EL+ D GD +E A L +DLD WELE+LLSG D AG +L+IQAGAGGTEAQDWA ML RMY R+ QR+G +++++E GEVAGIKSC ++VEG L YGLLAGEKGTHRLVR SPFNAQAKRQTSFAGVETFP+LE +DL V +G
Sbjct: 1 MDSGKLTGELAYLEGVCSEAGFWDDAAAARKTLAESTRLKSQVDRLDRWAAWGGDVESALELLAD---GDALS--------------DAEAVALAEEAAATLDAWAKDLDTWELERLLSGKFDNAGTQLTIQAGAGGTEAQDWALMLQRMYTRYFQRKGFSYKLIEEEPGEVAGIKSCRIDVEGPLCYGLLAGEKGTHRLVRQSPFNAQAKRQTSFAGVETFPVLELEDLDDVHIPDG 221
BLAST of mRNA_P-wetherbeei_contig7031.1.1 vs. uniprot
Match: A0A0G4ETN2_VITBC (RF_PROK_I domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ETN2_VITBC) HSP 1 Score: 230 bits (587), Expect = 2.710e-69 Identity = 127/271 (46.86%), Postives = 165/271 (60.89%), Query Frame = 1
Query: 7 VSL-AATVPATGAAETEVGDVRRELAALKERLAANAELLDDAKLAGELEYLEGVSGEDGFWDDPAAARAALARLAAVRAQAERSRTWRSWVEDAQTAVELICDAGGGDGTGGXXXXXXXXXXXXXXXXXXXXXKEGMAALCRLRRDLDAWELEKLLSGPHDAAGCRLSIQAGAGGTEAQDWAEMLCRMYQRFCQRRGLRLRVVDKEDGEVAGIKSCTMEVEGRLAYGLLAGEKGTHRLVRLSPFNAQAKRQTSFAGVETFPILEEDDLRSV 816
VSL AA A+ EV +V+R L L+ER N EL D + E++ ++ + ++ FWDDPA A ARL ++ WR +EDA+ A++ + D E + + RL R +D+WELEKL+ GP+D GCRL + AGAGGTE+ DWA+ML RMY RF QR+G R RVVD+ DGE AGIKS +E+EG AYGLL+GEKGTHRLVR+SPFNAQ KRQTSFAGVET PIL ++D+R +
Sbjct: 64 VSLKAAAADQPPASAVEVNEVKRTLDTLRERYDRNVELADLPSIGREMDSIQRETTKEDFWDDPARASKLSARLQRLKESRSSVEGWRRSLEDAEAAIDFVTSEELSDAE------------------RNEFLAESVTTMKRLSRHMDSWELEKLMDGPYDRVGCRLYVTAGAGGTESCDWADMLLRMYLRFAQRKGWRARVVDRSDGEEAGIKSAEVEIEGEYAYGLLSGEKGTHRLVRISPFNAQGKRQTSFAGVETMPILPDEDVRDI 316
BLAST of mRNA_P-wetherbeei_contig7031.1.1 vs. uniprot
Match: A0A7S2UWG0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWG0_9STRA) HSP 1 Score: 216 bits (549), Expect = 9.410e-64 Identity = 111/251 (44.22%), Postives = 158/251 (62.95%), Query Frame = 1
Query: 55 VGDVRRELAALKERLAANAELLDDAKLAGELEYLEGVSGEDGFWDDPAAARAALARLAAVRAQAERSRTWRSWVEDAQTAVELICDAGGGDGTGGXXXXXXXXXXXXXXXXXXXXXKEGMAALCRLRRDLDAWELEKLLSGPHDAAGCRLSIQAGAGGTEAQDWAEMLCRMYQRFCQRRGLRLRVVDKEDGEVAGIKSCTMEVEGRLAYGLLAGEKGTHRLVRLSPFNAQAKRQTSFAGVETFPILEEDDL 807
+ ++++L ER+ N +L+ L GE++ LEG + E WDDPA +A ++L ++ + E++ W+ W D +TA EL D +E + L++DLD++ELE++L GP+D CRL+IQAGAGGT+AQDWA ML RMY+R+ +R+G ++ ++D+ +GE AGIKS +E+ G AYG LAGEKGTHRLVRLSPFN+ KRQTSFAGVET PI+E+DDL
Sbjct: 84 ISSLKKDLQGFHERIERNVDLVGILALKGEIKDLEGQASESSLWDDPARGQALTSKLGFLKGRLEQTERWQRWQGDIETACELGADP------------------DLDSEEAAMLVEEALDISRNLQKDLDSFELEQMLGGPYDNCPCRLTIQAGAGGTDAQDWAAMLLRMYRRYAERQGYQVTLIDEMEGEEAGIKSAELEITGPFAYGRLAGEKGTHRLVRLSPFNSSNKRQTSFAGVETIPIVEQDDL 316
BLAST of mRNA_P-wetherbeei_contig7031.1.1 vs. uniprot
Match: UPI001FF3C1C2 (peptide chain release factor 2 n=1 Tax=Synechococcus sp. C9 TaxID=102119 RepID=UPI001FF3C1C2) HSP 1 Score: 213 bits (541), Expect = 1.510e-63 Identity = 117/259 (45.17%), Postives = 154/259 (59.46%), Query Frame = 1
Query: 52 EVGDVRRELAALKERLAANAELLDDAKLAGELEYLEGVSGEDGFWDDPAAARAALARLAAVRAQAERSRTWRSWVEDAQTAVELICDAGGGDGTGGXXXXXXXXXXXXXXXXXXXXXKEGMAALCRLRRDLDAWELEKLLSGPHDAAGCRLSIQAGAGGTEAQDWAEMLCRMYQRFCQRRGLRLRVVDKEDGEVAGIKSCTMEVEGRLAYGLLAGEKGTHRLVRLSPFNAQAKRQTSFAGVETFPILEEDDLRSVKTGE 828
E+ D++R++ L RL + LD L +L L+ V+G+ FWDDP A+ L L +A E+ WR +ED Q VEL+ A +E + L L ++L+ WELE+LLS P+DA G L+I AGAGGT+AQDWAEML RMY R+ +R+G ++R+ D +GE AGIKS T+E+EGR AYG L GEKGTHRLVR+SPFNA KRQTSFAGVE P+L E + V+ E
Sbjct: 2 ELSDLKRQVDQLNTRLGHAQDYLDPEALTAQLRDLQQVAGQPDFWDDPQRAQTTLQTLNDTKASLEQLHRWRRHIEDCQAIVELLATA-----------------------PDAALEQEAVQVLTTLDQELNRWELERLLSQPYDAQGAVLTINAGAGGTDAQDWAEMLLRMYTRWGERQGYKVRLTDLSEGEEAGIKSATLEIEGRYAYGYLRGEKGTHRLVRISPFNANGKRQTSFAGVEVMPMLAEQMVEEVEIPE 237
BLAST of mRNA_P-wetherbeei_contig7031.1.1 vs. uniprot
Match: UPI0012EC411E (peptide chain release factor 2 n=1 Tax=Rubidibacter lacunae TaxID=582514 RepID=UPI0012EC411E) HSP 1 Score: 211 bits (538), Expect = 3.920e-63 Identity = 117/259 (45.17%), Postives = 157/259 (60.62%), Query Frame = 1
Query: 52 EVGDVRRELAALKERLAANAELLDDAKLAGELEYLEGVSGEDGFWDDPAAARAALARLAAVRAQAERSRTWRSWVEDAQTAVELICDAGGGDGTGGXXXXXXXXXXXXXXXXXXXXXKEGMAALCRLRRDLDAWELEKLLSGPHDAAGCRLSIQAGAGGTEAQDWAEMLCRMYQRFCQRRGLRLRVVDKEDGEVAGIKSCTMEVEGRLAYGLLAGEKGTHRLVRLSPFNAQAKRQTSFAGVETFPILEEDDLRSVKTGE 828
E +++RE+ AL ERL + LD A L E+ LE + + FWD+P AA+ + RL +A E R WR+ +ED++ VEL+ D D E L RL R+LD W++E++LSGP+D G L+I AGAGGT+AQDWAEML RMY R+ +R+G R+ + + +G+ AGIKS T+EV+GR AYG L GEKGTHRLVR+SPFNA KRQTSFAG+E P L+E + V+ E
Sbjct: 2 ETTELKREVRALAERLDKVQDYLDPAALNAEIHDLEQTAAQPEFWDEPDAAQRLIQRLDGRKASLEVYRQWRAGLEDSEAIVELL-DQDSDD----------------------LLLAEATETLTRLNRELDRWDVEQMLSGPYDERGAVLTINAGAGGTDAQDWAEMLLRMYTRWAERQGYRIHLAELSEGDEAGIKSATLEVDGRFAYGYLRGEKGTHRLVRISPFNANGKRQTSFAGIEVMPALDEASVSDVEIPE 237
BLAST of mRNA_P-wetherbeei_contig7031.1.1 vs. uniprot
Match: A0A5J6Q530_9SYNE (Peptide chain release factor 2 n=1 Tax=Synechococcus sp. RSCCF101 TaxID=2511069 RepID=A0A5J6Q530_9SYNE) HSP 1 Score: 207 bits (527), Expect = 2.210e-61 Identity = 115/250 (46.00%), Postives = 151/250 (60.40%), Query Frame = 1
Query: 52 EVGDVRRELAALKERLAANAELLDDAKLAGELEYLEGVSGEDGFWDDPAAARAALARLAAVRAQAERSRTWRSWVEDAQTAVELICDAGGGDGTGGXXXXXXXXXXXXXXXXXXXXXKEGMAALCRLRRDLDAWELEKLLSGPHDAAGCRLSIQAGAGGTEAQDWAEMLCRMYQRFCQRRGLRLRVVDKEDGEVAGIKSCTMEVEGRLAYGLLAGEKGTHRLVRLSPFNAQAKRQTSFAGVETFPILEED 801
++ D +R+L+ L ERL + LD L + LE ++ + FW+D AA+ + +L V+AQ + WR+ VEDA+ +EL EG L RLR +LD WELE+LLSGPHD G L+I AGAGGT+AQDWA+ML RMY R+ + RG+++ V + +GE AGIKS T+E+EGR AYG L EKGTHRLVR+SPFNA KRQTSFAGVE P+LEE+
Sbjct: 3 DLTDFKRDLSELTERLGHAQDCLDVPALTARQQDLEQLASQPDFWNDQQAAQRQMRQLDDVKAQLSQLSQWRAVVEDARAGLELA-----------------------ELEPDDDLLAEGQQGLDRLRNELDRWELERLLSGPHDKEGAVLTINAGAGGTDAQDWAQMLLRMYSRWAEGRGMKVSVDELSEGEEAGIKSATIEIEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVMPMLEEE 229
BLAST of mRNA_P-wetherbeei_contig7031.1.1 vs. uniprot
Match: UPI0016835605 (peptide chain release factor 2 n=1 Tax=Oscillatoria sp. FACHB-1406 TaxID=2692846 RepID=UPI0016835605) HSP 1 Score: 202 bits (513), Expect = 2.340e-59 Identity = 108/252 (42.86%), Postives = 153/252 (60.71%), Query Frame = 1
Query: 52 EVGDVRRELAALKERLAANAELLDDAKLAGELEYLEGVSGEDGFWDDPAAARAALARLAAVRAQAERSRTWRSWVEDAQTAVELICDAGGGDGTGGXXXXXXXXXXXXXXXXXXXXXKEGMAALCRLRRDLDAWELEKLLSGPHDAAGCRLSIQAGAGGTEAQDWAEMLCRMYQRFCQRRGLRLRVVDKEDGEVAGIKSCTMEVEGRLAYGLLAGEKGTHRLVRLSPFNAQAKRQTSFAGVETFPILEEDDL 807
E+ D++R+L + RL + LD L ++ LE + + FWDD +A+ L RL +++ E+ + W+S ED+ EL+ +E + L RL RDLD WEL++LLSG +D+AG L+I AGAGGT+AQDWAEML RMY R+ +++G ++ + + +G+ AGIKS T+E++GR AYG L GEKGTHRLVR+SPFNA KRQTSFAGVE P LEE+++
Sbjct: 2 EITDLKRDLQTIATRLGKTQDYLDLPALNAQIHDLEQSAAQPNFWDDQTSAQKTLQRLNDLKSNLEQMQQWQSEWEDSSAIAELL-----------------------EQEDDQTLLEEAASTLQRLERDLDRWELQQLLSGQYDSAGAVLTINAGAGGTDAQDWAEMLLRMYTRWGEKQGYKVHLAELSEGDEAGIKSVTLEIDGRYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEIMPALEENEI 230
BLAST of mRNA_P-wetherbeei_contig7031.1.1 vs. uniprot
Match: A0A6I5NQD3_9CYAN (Peptide chain release factor 2 n=1 Tax=Leptolyngbya sp. SIO4C1 TaxID=2607770 RepID=A0A6I5NQD3_9CYAN) HSP 1 Score: 201 bits (512), Expect = 3.760e-59 Identity = 102/250 (40.80%), Postives = 152/250 (60.80%), Query Frame = 1
Query: 52 EVGDVRRELAALKERLAANAELLDDAKLAGELEYLEGVSGEDGFWDDPAAARAALARLAAVRAQAERSRTWRSWVEDAQTAVELICDAGGGDGTGGXXXXXXXXXXXXXXXXXXXXXKEGMAALCRLRRDLDAWELEKLLSGPHDAAGCRLSIQAGAGGTEAQDWAEMLCRMYQRFCQRRGLRLRVVDKEDGEVAGIKSCTMEVEGRLAYGLLAGEKGTHRLVRLSPFNAQAKRQTSFAGVETFPILEED 801
++ D++RE+ L ERL + LD + +++ LE ++ + FWDDP+ A+ L L ++ E+ W++ +ED Q +EL+ E + +L R+L WEL++LLSGP+D +G +SI AGAGGT+AQDWAEML RMY R+C++ G RL ++++ G+ AG+KS T+E+EGR A+G L EKGTHRLVR+SPFNA KRQTSFAG+E P+L+++
Sbjct: 3 DLSDLKREIELLSERLGKTQDYLDLPAIRAKIQDLEQIAAQPDFWDDPSQAQTKLQELNEYKSHVEQLSEWQTNLEDMQAILELL-----------------------EAEADEALWHEAQTTVAKLNRELAQWELQQLLSGPYDKSGAIVSINAGAGGTDAQDWAEMLLRMYTRWCEQHGYRLHLLEESKGDEAGLKSATLEIEGRYAFGYLKAEKGTHRLVRISPFNANGKRQTSFAGIEVMPMLDDN 229 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7031.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig7031.1.1 >prot_P-wetherbeei_contig7031.1.1 ID=prot_P-wetherbeei_contig7031.1.1|Name=mRNA_P-wetherbeei_contig7031.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=277bp PRVSLAATVPATGAAETEVGDVRRELAALKERLAANAELLDDAKLAGELEback to top mRNA from alignment at P-wetherbeei_contig7031:3..833- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig7031.1.1 ID=mRNA_P-wetherbeei_contig7031.1.1|Name=mRNA_P-wetherbeei_contig7031.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=831bp|location=Sequence derived from alignment at P-wetherbeei_contig7031:3..833- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig7031:3..833- >mRNA_P-wetherbeei_contig7031.1.1 ID=mRNA_P-wetherbeei_contig7031.1.1|Name=mRNA_P-wetherbeei_contig7031.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=831bp|location=Sequence derived from alignment at P-wetherbeei_contig7031:3..833- (Phaeothamnion wetherbeei SAG_119_79)back to top |