mRNA_P-wetherbeei_contig7016.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7016.1.1
Unique NamemRNA_P-wetherbeei_contig7016.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7016.1.1 vs. uniprot
Match: D8LKU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU7_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 2.850e-68
Identity = 116/222 (52.25%), Postives = 143/222 (64.41%), Query Frame = 1
Query:    1 LERKEVAVRARAHQNDVNAVTFVDDSGHVLLSGSDDCCIKAWDTRVMTTAVGCLVGHRGGITCLSSRHDGRYAISNGKDQVLKLWDLRGMVSAGDKSVRAATSQRAGDYRWMEPDVAGAQRPTGFK---DVSVGDFTGHRVLQTLIRCYFSPEHTTGQRYIISGSHDGRVRIWDSVTGGVVRQLAYHREIVRDVAWHPFLPLVTSSSWDGRIGLFRYGAASE 657
            LERKE   R  AH +DVNAV F D    V+LSG DDC IK WD R    AVG L GH+ GITC++++ DGR+ ISN KDQ +KLWD+R M+   D  ++ A      DYR M   +  A RP   K   D SV  F GH+VLQTLIRCYFSP HTTGQR+++SGS DG V IWD +TG +V  L++H    RDV+WHP LPL+ S SWD  +GL+ Y   + 
Sbjct:  376 LERKERVARISAHDDDVNAVAFADSGSQVVLSGGDDCVIKIWDLRSPDAAVGGLCGHQAGITCITAKGDGRHFISNSKDQTMKLWDMRRMLDPKDDKMKKAAHIPHWDYRHMTMSLP-ALRPIKSKRASDESVKTFHGHKVLQTLIRCYFSPTHTTGQRFVMSGSADGSVCIWDILTGNMVDSLSWHTGNTRDVSWHPHLPLIASFSWDAAVGLWSYSGGAR 596          
BLAST of mRNA_P-wetherbeei_contig7016.1.1 vs. uniprot
Match: A0A484KG52_9ASTE (Uncharacterized protein n=2 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484KG52_9ASTE)

HSP 1 Score: 213 bits (543), Expect = 1.050e-63
Identity = 112/223 (50.22%), Postives = 149/223 (66.82%), Query Frame = 1
Query:    1 LERKEVAVRARAHQNDVNAVTFVDDSGHVLLSGSDDCCIKAWDTRVMTT---AVGCLVGHRGGITCLSSRHDGRYAISNGKDQVLKLWDLRGMVSAGDKSVRAATSQRAGDYRWME-PDVAGAQRPTGFKDVSVGDFTGHRVLQTLIRCYFSPEHTTGQRYIISGSHDGRVRIWDSVTGGVVRQLAYHREIVRDVAWHPFLPLVTSSSWDGRIGLFRYGAASE 657
            LE K++++R  AHQ+DVNAV F D++GH++ SGSDD   K WD R   +   A G L+GH  GIT + +R DGRY ISNGKDQ +KLWD+R M S  + + R        DYRWM+ P+ A  +R     D+SV  + GH VL+TLIRCYFSP ++TGQ+Y+ +GS D  V I+D V+G +V +L YH   VRD  WHPFLP++TSSSWDG I  + +  +SE
Sbjct:  238 LETKKLSLRINAHQSDVNAVCFADETGHLIFSGSDDNLCKVWDRRCFASEQKAAGVLIGHLEGITFVDTRGDGRYLISNGKDQAMKLWDIRKMSSNVNYTPRPRKYDW--DYRWMDYPEHARNKRHP--HDLSVSTYRGHSVLRTLIRCYFSPAYSTGQKYVYTGSTDSSVYIYDLVSGALVAKLDYHEAPVRDCNWHPFLPMLTSSSWDGVIVNWEFPGSSE 456          
BLAST of mRNA_P-wetherbeei_contig7016.1.1 vs. uniprot
Match: UPI001FB19B55 (LEC14B protein isoform X1 n=2 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB19B55)

HSP 1 Score: 213 bits (542), Expect = 1.560e-63
Identity = 110/217 (50.69%), Postives = 137/217 (63.13%), Query Frame = 1
Query:    1 LERKEVAVRARAHQNDVNAVTFVDDSGHVLLSGSDDCCIKAWDTRVMTT---AVGCLVGHRGGITCLSSRHDGRYAISNGKDQVLKLWDLRGMVSAGDKSVRAATSQRAGDYRWMEPDVAGAQRPTGFKDVSVGDFTGHRVLQTLIRCYFSPEHTTGQRYIISGSHDGRVRIWDSVTGGVVRQLAYHREIVRDVAWHPFLPLVTSSSWDGRIGLFRY 642
            LE  ++++R  AH  DVN V F D+SGH++ SGSDD   K WD R   +     G LVGH  GITC+ SR DGRY ISNGKDQ++KLWD+R M S+  K           DYRWME    G        D SV  + GH VL+TLIRCYFSP ++TGQRYI +GSHD  V I+D VTG  VR+L +H   VRD +WHP+ P++ SSSWDG I  + +
Sbjct:  244 LEANKLSLRILAHTCDVNTVCFADESGHIIFSGSDDSLCKVWDRRCFKSNGEPAGTLVGHLEGITCIDSRGDGRYFISNGKDQMIKLWDIRKM-SSNSKGNNQGYRNYEWDYRWMEYPSPGTS--LNHPDQSVATYRGHAVLRTLIRCYFSPVYSTGQRYIYTGSHDACVYIYDVVTGARVRKLEHHMTTVRDCSWHPYYPMLVSSSWDGDIAKWDF 457          
BLAST of mRNA_P-wetherbeei_contig7016.1.1 vs. uniprot
Match: A0A6P8BRX0_PUNGR (LEC14B homolog n=6 Tax=Punica granatum TaxID=22663 RepID=A0A6P8BRX0_PUNGR)

HSP 1 Score: 212 bits (540), Expect = 6.360e-63
Identity = 116/225 (51.56%), Postives = 146/225 (64.89%), Query Frame = 1
Query:    1 LERKEVAVRARAHQNDVNAVTFVDDSGHVLLSGSDDCCIKAWDTRVMTTA---VGCLVGHRGGITCLSSRHDGRYAISNGKDQVLKLWDLRGMVSAGDKSVRAATSQRA--GDYRWMEPDVAG-AQRPTGFKDVSVGDFTGHRVLQTLIRCYFSPEHTTGQRYIISGSHDGRVRIWDSVTGGVVRQLAYHREIVRDVAWHPFLPLVTSSSWDGRIGLFRYGAASE 657
            LE  ++++R  AH +DVN V F D+SGH++ SGSDD   K WD R   T     G LVGH  GIT + SR DGRY ISNGKDQ +KLWD+R M S+ + S  ++ S R    DYRWM  D  G AQ      D SV  + GH VL+TLIRCYFSPEH+TGQ+YI +GS+D  V I+D VTG +V  L YHR  VRD +WHP  P++ SSSWDG +  + + A+ E
Sbjct:  256 LEANKLSLRISAHMSDVNTVCFADESGHLVYSGSDDTYCKVWDRRCFNTREKPAGVLVGHIEGITFIDSRGDGRYFISNGKDQAIKLWDIRKM-SSNETSHCSSLSFRNYDWDYRWM--DYHGRAQHLKHPNDQSVTTYRGHSVLRTLIRCYFSPEHSTGQKYIYTGSNDSWVYIYDLVTGALVAVLKYHRSTVRDCSWHPSYPMLVSSSWDGEVVKWEFSASGE 477          
BLAST of mRNA_P-wetherbeei_contig7016.1.1 vs. uniprot
Match: A0A835R757_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835R757_VANPL)

HSP 1 Score: 205 bits (521), Expect = 2.770e-62
Identity = 109/217 (50.23%), Postives = 138/217 (63.59%), Query Frame = 1
Query:    1 LERKEVAVRARAHQNDVNAVTFVDDSGHVLLSGSDDCCIKAWDTRVMTT---AVGCLVGHRGGITCLSSRHDGRYAISNGKDQVLKLWDLRGMVSAGDKSVRAATSQRAGDYRWMEPDVAGAQRPTGFKDVSVGDFTGHRVLQTLIRCYFSPEHTTGQRYIISGSHDGRVRIWDSVTGGVVRQLAYHREIVRDVAWHPFLPLVTSSSWDGRIGLFRY 642
            LE  ++  R  AH +DVN VTF D++GH++ SGSDD   K WD R M     A G L+GH  GIT + SR DGRY ISNGKDQ LKLWD+R M S  + S+   ++    DYRWME     A+      D S+  + GH VLQTLIRCYFSP H+TGQRYI +GSHD  V I+D V+G  + +L  H+  VRD +WHPF P + SSSWDG +  + +
Sbjct:   60 LEANKLLYRFPAHTSDVNTVTFADETGHLIYSGSDDNLCKVWDRRCMIRKDQAAGVLIGHLEGITFIDSRGDGRYFISNGKDQALKLWDIRKMSSGANCSMPMKSNW---DYRWMEYPRH-ARNLCHPHDQSLTTYRGHSVLQTLIRCYFSPAHSTGQRYIYTGSHDNCVYIYDVVSGAQIAKLDCHQMPVRDCSWHPFYPTLVSSSWDGLVARWEF 272          
BLAST of mRNA_P-wetherbeei_contig7016.1.1 vs. uniprot
Match: A0A2Z7DDL8_9LAMI (LEC14B homolog n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7DDL8_9LAMI)

HSP 1 Score: 211 bits (536), Expect = 2.990e-62
Identity = 110/222 (49.55%), Postives = 143/222 (64.41%), Query Frame = 1
Query:    1 LERKEVAVRARAHQNDVNAVTFVDDSGHVLLSGSDDCCIKAWDTRVMTTA---VGCLVGHRGGITCLSSRHDGRYAISNGKDQVLKLWDLRGMVSAGDKSVRAATSQRAGDYRWMEPDVAGAQRPTGFKDVSVGDFTGHRVLQTLIRCYFSPEHTTGQRYIISGSHDGRVRIWDSVTGGVVRQLAYHREIVRDVAWHPFLPLVTSSSWDGRIGLFRYGAASE 657
            LE K+V++R RAH +DVN V F D+SG +L SGSDD  +K WD R   T    VG L+GH  GIT + SR DGRY ISNGKDQV+KLWD+R M S  + +          DYRWM+  V   +    + D SV  + GH VL+TLIRCYFSPE++TGQ+YI +GSHD  + ++D V+G  V +L YH+  VRD +WHP  P++ SSSWDG I  + +    E
Sbjct:  254 LEAKKVSLRIRAHASDVNTVCFADESGSLLYSGSDDNFVKVWDRRCFITKSKPVGILMGHLEGITFIDSRGDGRYLISNGKDQVIKLWDIRKMSS--NSTCYQGFRNYEWDYRWMDYPVQARKLKHPY-DQSVLTYKGHSVLRTLIRCYFSPEYSTGQKYIYTGSHDSSIYVYDLVSGAQVAKLQYHKLTVRDCSWHPIYPMLVSSSWDGDIVKWEFPGDGE 472          
BLAST of mRNA_P-wetherbeei_contig7016.1.1 vs. uniprot
Match: A0A2I0WY29_9ASPA (LEC14B n=4 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WY29_9ASPA)

HSP 1 Score: 205 bits (521), Expect = 3.600e-62
Identity = 112/222 (50.45%), Postives = 140/222 (63.06%), Query Frame = 1
Query:    1 LERKEVAVRARAHQNDVNAVTFVDDSGHVLLSGSDDCCIKAWDTRVMTT---AVGCLVGHRGGITCLSSRHDGRYAISNGKDQVLKLWDLRGMVSAGDKSVRAATSQRAGDYRWMEPDVAGAQRPTGFKDVSVGDFTGHRVLQTLIRCYFSPEHTTGQRYIISGSHDGRVRIWDSVTGGVVRQLAYHREIVRDVAWHPFLPLVTSSSWDGRIGLFRYGAASE 657
            LE  ++  R  AH +DVN VTF D++G+++ SGSDD   K WD R +     A G L GH  GIT + SR DGRY ISNGKDQ +KLWD+R M S+G K  R   S    DYRWME   + A+  +   D SV  + GH VL+TLIRCYFSP H+TGQRYI +GSHD  V I+D VTG  V +L  H+  VRD +WHP+ P + SSSWDG I  + +    E
Sbjct:   68 LEANKLTSRFPAHSSDVNTVTFADETGNLVYSGSDDNLCKVWDRRCIVKKEQAAGVLTGHLEGITFIDSRGDGRYFISNGKDQTIKLWDIRKM-SSGPKCPRPRISDW--DYRWMEYP-SHAKHLSHPNDQSVATYRGHSVLRTLIRCYFSPSHSTGQRYIYTGSHDNCVYIYDVVTGDQVARLDCHQMTVRDCSWHPYYPTLVSSSWDGLIARWEFPGNDE 285          
BLAST of mRNA_P-wetherbeei_contig7016.1.1 vs. uniprot
Match: A0A5A7PC62_STRAF (LEC14B homolog n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7PC62_STRAF)

HSP 1 Score: 208 bits (530), Expect = 1.120e-61
Identity = 108/223 (48.43%), Postives = 143/223 (64.13%), Query Frame = 1
Query:    1 LERKEVAVRARAHQNDVNAVTFVDDSGHVLLSGSDDCCIKAWDTRVMTT---AVGCLVGHRGGITCLSSRHDGRYAISNGKDQVLKLWDLRGMVSAGDKSVRAATSQRAGDYRWME-PDVAGAQRPTGFKDVSVGDFTGHRVLQTLIRCYFSPEHTTGQRYIISGSHDGRVRIWDSVTGGVVRQLAYHREIVRDVAWHPFLPLVTSSSWDGRIGLFRYGAASE 657
            LE K +++R  AH +DVNAV F D+SGH++ SGSDD   K WD R   +   A G L+GH  GIT ++SR DGRY ISNGKDQ LKLWD+R M S  + + R    +   DYRWME P  A   R     D+S+  + GH VL+TL+RCYFSP ++TGQ+YI +GS D  V ++D ++G  V +L YH ++VRD  WHP  P++ SSSWDG I  + +    E
Sbjct:  235 LESKRLSLRIPAHLSDVNAVCFADESGHIIYSGSDDHLCKVWDRRCFASRGQAAGVLIGHLEGITFINSRGDGRYLISNGKDQALKLWDIRKMSSNVNYTPRRRYEEW--DYRWMEYPQQAKNLRHHA--DLSLATYRGHSVLRTLVRCYFSPAYSTGQKYIYTGSADSSVYVYDVLSGDQVAKLDYHEDVVRDCNWHPHFPMIVSSSWDGMISRWEFPGKGE 453          
BLAST of mRNA_P-wetherbeei_contig7016.1.1 vs. uniprot
Match: A0A2I0B3C4_9ASPA (LEC14B homolog n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0B3C4_9ASPA)

HSP 1 Score: 208 bits (530), Expect = 1.450e-61
Identity = 112/222 (50.45%), Postives = 139/222 (62.61%), Query Frame = 1
Query:    1 LERKEVAVRARAHQNDVNAVTFVDDSGHVLLSGSDDCCIKAWDTRVMTT---AVGCLVGHRGGITCLSSRHDGRYAISNGKDQVLKLWDLRGMVSAGDKSVRAATSQRAGDYRWMEPDVAGAQRPTGFKDVSVGDFTGHRVLQTLIRCYFSPEHTTGQRYIISGSHDGRVRIWDSVTGGVVRQLAYHREIVRDVAWHPFLPLVTSSSWDGRIGLFRYGAASE 657
            LE  ++  R  AH  DVN VTF D++G+++ SGSDD   K WD R + T   A G L GH  GIT + SR DGRY ISNGKDQ++KLWD+R M S G K  R   S    DYRWME      Q    + D S+  + GH VL+TLIRCYFSP H+TGQRYI +GSHD  V I+D VTG  V +L  H+  VRD +WHP+ P++ SSSWDG I  + +    E
Sbjct:  241 LEANKLTTRIPAHSADVNTVTFADETGNLIFSGSDDNLCKVWDRRCLITQGLAAGVLTGHLEGITFIDSRGDGRYFISNGKDQMIKLWDIRKM-SCGVKCPRPIISDW--DYRWMEYPSHAKQLRHPY-DQSLATYQGHSVLRTLIRCYFSPPHSTGQRYIYTGSHDNSVYIYDVVTGAQVARLDCHQLTVRDCSWHPYYPMLVSSSWDGLIARWEFSGNDE 458          
BLAST of mRNA_P-wetherbeei_contig7016.1.1 vs. uniprot
Match: A0A1U7YR36_NELNU (LEC14B homolog n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U7YR36_NELNU)

HSP 1 Score: 201 bits (512), Expect = 1.450e-61
Identity = 109/214 (50.93%), Postives = 137/214 (64.02%), Query Frame = 1
Query:   40 QNDVNAVTFVDDSGHVLLSGSDDCCIKAWDTRVMTTA---VGCLVGHRGGITCLSSRHDGRYAISNGKDQVLKLWDLRGMVSAGDKSVRAATSQRAGDYRWME-PDVA-GAQRPTGFKDVSVGDFTGHRVLQTLIRCYFSPEHTTGQRYIISGSHDGRVRIWDSVTGGVVRQLAYHREIVRDVAWHPFLPLVTSSSWDGRIGLFRY---GAASE 657
            Q+DVN V F D+SGH++ SGSDD   K WD R         G LVGH  GIT L SR DGRY ISNGKDQ +KLWD+R M S+   S     ++   DYRWM+ PD A G + P    D S+  ++GH VLQTLIRCYFSP ++TGQ+YI +GS DG V ++D V+G  V +L YH   VRD +WHP  P++ SSSWDG I  + +   G AS+
Sbjct:   29 QSDVNTVCFADESGHLIYSGSDDNLCKVWDRRCFIAKGRPAGVLVGHLEGITFLDSRRDGRYFISNGKDQTIKLWDIRKMSSSASCSTTFRNNEW--DYRWMDYPDQARGLKHPN---DQSLATYSGHSVLQTLIRCYFSPSYSTGQKYIYTGSSDGYVYVYDLVSGAQVAKLDYHASTVRDCSWHPSYPMLVSSSWDGVIARWEFPSTGKASQ 237          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7016.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKU7_ECTSI2.850e-6852.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A484KG52_9ASTE1.050e-6350.22Uncharacterized protein n=2 Tax=Cuscuta sect. Clei... [more]
UPI001FB19B551.560e-6350.69LEC14B protein isoform X1 n=2 Tax=Impatiens glandu... [more]
A0A6P8BRX0_PUNGR6.360e-6351.56LEC14B homolog n=6 Tax=Punica granatum TaxID=22663... [more]
A0A835R757_VANPL2.770e-6250.23Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A0A2Z7DDL8_9LAMI2.990e-6249.55LEC14B homolog n=1 Tax=Dorcoceras hygrometricum Ta... [more]
A0A2I0WY29_9ASPA3.600e-6250.45LEC14B n=4 Tax=Dendrobium catenatum TaxID=906689 R... [more]
A0A5A7PC62_STRAF1.120e-6148.43LEC14B homolog n=1 Tax=Striga asiatica TaxID=4170 ... [more]
A0A2I0B3C4_9ASPA1.450e-6150.45LEC14B homolog n=1 Tax=Apostasia shenzhenica TaxID... [more]
A0A1U7YR36_NELNU1.450e-6150.93LEC14B homolog n=1 Tax=Nelumbo nucifera TaxID=4432... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7016contigP-wetherbeei_contig7016:268..1822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LKU7
Preferred nameDCAF11
PFAMsWD40
Model size660
Max annot lvl2759|Eukaryota
KEGG koko:K10770,ko:K11801
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0007568,GO:0008021,GO:0008134,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010259,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010941,GO:0010942,GO:0012505,GO:0016020,GO:0019219,GO:0019222,GO:0019538,GO:0019867,GO:0019941,GO:0030133,GO:0030163,GO:0030424,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031461,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0032991,GO:0036211,GO:0036477,GO:0040008,GO:0040014,GO:0040018,GO:0042995,GO:0043005,GO:0043025,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044449,GO:0044456,GO:0044464,GO:0045202,GO:0045892,GO:0045927,GO:0045934,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048638,GO:0048639,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051252,GO:0051253,GO:0051603,GO:0055120,GO:0060255,GO:0065007,GO:0070013,GO:0070382,GO:0071704,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0097458,GO:0097708,GO:0098588,GO:0098793,GO:0098805,GO:0099080,GO:0099081,GO:0099503,GO:0099512,GO:0120025,GO:1901214,GO:1901216,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1905802,GO:1905803,GO:1990234,GO:2000112,GO:2000113,GO:2001141
Exons4
Evalue4.67e-69
EggNOG OGsKOG0266@1|root,KOG0266@2759|Eukaryota
Ec32 ortholog descriptionG-protein beta WD-40 repeat
Ec32 orthologEc-11_005630.1
EC2.1.1.229
DescriptionWD repeat-containing protein
Cds size660
COG categoryB
BRITEko00000,ko01000,ko03016,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186952.4366052-CDS-P-wetherbeei_contig7016:267..3871683186952.4366052-CDS-P-wetherbeei_contig7016:267..387Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7016 268..387 +
1683186952.4527903-CDS-P-wetherbeei_contig7016:721..8981683186952.4527903-CDS-P-wetherbeei_contig7016:721..898Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7016 722..898 +
1683186952.4623392-CDS-P-wetherbeei_contig7016:1159..13411683186952.4623392-CDS-P-wetherbeei_contig7016:1159..1341Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7016 1160..1341 +
1683186952.4765956-CDS-P-wetherbeei_contig7016:1641..18221683186952.4765956-CDS-P-wetherbeei_contig7016:1641..1822Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7016 1642..1822 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7016.1.1prot_P-wetherbeei_contig7016.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7016 268..1822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7016.1.1

>prot_P-wetherbeei_contig7016.1.1 ID=prot_P-wetherbeei_contig7016.1.1|Name=mRNA_P-wetherbeei_contig7016.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=220bp
LERKEVAVRARAHQNDVNAVTFVDDSGHVLLSGSDDCCIKAWDTRVMTTA
VGCLVGHRGGITCLSSRHDGRYAISNGKDQVLKLWDLRGMVSAGDKSVRA
ATSQRAGDYRWMEPDVAGAQRPTGFKDVSVGDFTGHRVLQTLIRCYFSPE
HTTGQRYIISGSHDGRVRIWDSVTGGVVRQLAYHREIVRDVAWHPFLPLV
TSSSWDGRIGLFRYGAASE*
back to top

mRNA from alignment at P-wetherbeei_contig7016:268..1822+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7016.1.1 ID=mRNA_P-wetherbeei_contig7016.1.1|Name=mRNA_P-wetherbeei_contig7016.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1555bp|location=Sequence derived from alignment at P-wetherbeei_contig7016:268..1822+ (Phaeothamnion wetherbeei SAG_119_79)
TTGGAGCGCAAAGAGGTGGCGGTCAGGGCGCGCGCCCATCAGAACGACGT CAATGCCGTCACTTTCGTGGACGACTCGGGCCACGTCCTGCTGTCGGGCT CCGATGACTGCTGCATCAAGGTGCGTGGAAGGATGAGTCATTGACTTCAG AAATTTTTCACCCCAAGCTAGTTGTTGTTCGAATGCAGATATAATTGCGG CAAGCTAAAAGAGCCGATTGCGGGTCACTGTAAGTGGACGCCTTAAGGAT GTCCGTTGTGGTTTCGACTCAGAGGATTCTTAGTACTTTCAGGCCAGCTC AAGCTTTCTGCTTCCTTCTTCCCGCCGCTTGCCTGCCTTTTTTATATCCT CTCGCTACGGCCACTTTGGCGGCGGCGATGGTGCGGTCGCGGCGACGGCT CGCTTCCACGGCGGCAACGGCCGTCTTCTTTACGGCGTCGATCGCTTCGA GCAGGCGTGGGACACACGCGTCATGACCACTGCGGTGGGCTGCCTTGTGG GCCACCGCGGTGGCATCACGTGCCTTTCGTCGCGACACGACGGCCGCTAT GCTATCTCCAATGGCAAGGACCAAGTGCTCAAGCTCTGGGACCTCCGCGG CATGGTGTCGGCTGGCGACAAGTCCGTCAGGGTGAGCCAGTCAACCAGTA AGGTCGCGGGCATTGACGGCTTTGTGGCAATGGTGGCCATTTTGGTGTGT GATTGGGCTGATGGGTGGCAGTAGCGATAGTGGCTGCTACGATGGCGTCG ACGGCGGCGGCCGGGGGCGATGACAGCGACGGCAAGGCCGATAGCAGCGG CGACAATAGTGACATGCGTACACTCGATCACCAAACTGGTCCTTGTGAAT GCACCCCCTGCTGCGCTATGGTATTTGCGCTTTGTTTCGCAGGCGGCAAC ATCGCAGCGGGCCGGCGACTACCGGTGGATGGAGCCGGACGTGGCGGGCG CGCAGCGGCCGACGGGCTTCAAGGACGTGTCGGTGGGTGACTTTACGGGC CACCGTGTCCTGCAGACTCTGATCCGCTGCTACTTCAGCCCGGAGCACAC CACGGGCCAGCGCTACATCATCAGGTGCCTTGCGGCTGTGCACTCGTGGC CTGCAAACCTCTTTTGCGGTCTTCCTGAGTGCTTCATGCTGTATGGTGTC ATGCGAAAGCGTTTTGGTTGCGTTGCGCCGGCTTCTCGCGCTCATCGAAA GGAACTAGCCTTTTGGCCTTCCTAAGCATTTTTCCGAGTGCCTGCTGTTG ATCAAACCTGAGCTTTCTGCCTTCGTCTTTCGAAAGCAATGTTTTCAGAA CTCAACTTGAGCCGCGCTTTCTTGAATCACCACTTTCACTTCCTCGTGTT CGTGTCCACGCATCCTGCCACCAGCGGCTCGCACGATGGACGCGTCCGCA TCTGGGACTCGGTGACCGGCGGAGTCGTCCGCCAGCTGGCGTACCACCGT GAGATTGTGCGGGATGTGGCGTGGCACCCCTTCCTGCCGCTCGTCACGTC GAGCAGCTGGGACGGCCGCATTGGTCTCTTCCGATACGGCGCCGCCAGTG AATGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7016:268..1822+

>mRNA_P-wetherbeei_contig7016.1.1 ID=mRNA_P-wetherbeei_contig7016.1.1|Name=mRNA_P-wetherbeei_contig7016.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=660bp|location=Sequence derived from alignment at P-wetherbeei_contig7016:268..1822+ (Phaeothamnion wetherbeei SAG_119_79)
TTGGAGCGCAAAGAGGTGGCGGTCAGGGCGCGCGCCCATCAGAACGACGT
CAATGCCGTCACTTTCGTGGACGACTCGGGCCACGTCCTGCTGTCGGGCT
CCGATGACTGCTGCATCAAGGCGTGGGACACACGCGTCATGACCACTGCG
GTGGGCTGCCTTGTGGGCCACCGCGGTGGCATCACGTGCCTTTCGTCGCG
ACACGACGGCCGCTATGCTATCTCCAATGGCAAGGACCAAGTGCTCAAGC
TCTGGGACCTCCGCGGCATGGTGTCGGCTGGCGACAAGTCCGTCAGGGCG
GCAACATCGCAGCGGGCCGGCGACTACCGGTGGATGGAGCCGGACGTGGC
GGGCGCGCAGCGGCCGACGGGCTTCAAGGACGTGTCGGTGGGTGACTTTA
CGGGCCACCGTGTCCTGCAGACTCTGATCCGCTGCTACTTCAGCCCGGAG
CACACCACGGGCCAGCGCTACATCATCAGCGGCTCGCACGATGGACGCGT
CCGCATCTGGGACTCGGTGACCGGCGGAGTCGTCCGCCAGCTGGCGTACC
ACCGTGAGATTGTGCGGGATGTGGCGTGGCACCCCTTCCTGCCGCTCGTC
ACGTCGAGCAGCTGGGACGGCCGCATTGGTCTCTTCCGATACGGCGCCGC
CAGTGAATGA
back to top