mRNA_P-wetherbeei_contig7012.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7012.1.2
Unique NamemRNA_P-wetherbeei_contig7012.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7012.1.2 vs. uniprot
Match: D7FJA1_ECTSI (Putative Leucine Rich Repeat Protein Kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJA1_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 4.260e-33
Identity = 88/214 (41.12%), Postives = 106/214 (49.53%), Query Frame = 1
Query:  166 LFRAAVNPNLTYVPAELTTMARLSWLSLAGCAWCP---ERPPHAGLEELKPAEVDI---LGEGASGDVVAGVWRGRPVAVKTFKSAASPDGRAADELAVACFVDHPRLARAVGVVRRPELS--------------------------------------------------LVMERIPGKPLALKPNFASVLRCRWPEGARFRSRFVLSVGMQV 639
            L R AVNP LT VP  LT   +L+W+SLAG AWC    E+       E+   EV +   LG GASG+V AGV+RGR VAVK FK+   PDG A DEL VA  VDHP L +++GVV                                                        LVMER+ G+PLA KP+F+SVLRCRW  G RF    VL+V +QV
Sbjct:  185 LCRLAVNPGLTVVPEGLTYAEKLAWVSLAGSAWCARASEKRRRTSFPEIPREEVVLGERLGSGASGEVFAGVYRGRDVAVKVFKADIGPDGNARDELDVALTVDHPNLTKSLGVVHASSTKPSGRSSSGSESEVAXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGIENLRWLVMERVVGRPLAEKPDFSSVLRCRWGSGRRFEPVLVLAVLLQV 398          
BLAST of mRNA_P-wetherbeei_contig7012.1.2 vs. uniprot
Match: A0A5J4XR07_9CHLO (Kinase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XR07_9CHLO)

HSP 1 Score: 132 bits (331), Expect = 1.380e-32
Identity = 72/140 (51.43%), Postives = 93/140 (66.43%), Query Frame = 1
Query:  232 LSWLSLAGCAWCPERPP-HAGLEELKPAEVDI---LGEGASGDVVAGVWRGRPVAVKTFKSAASPDGRAADELAVACFVDHPRLARAVGVVRRPELSLVMERIPGKPLALKPNFASVLRCRWPEGARFRSRFVLSVGMQV 639
            L+WLSLAG   C   PP    +  L  +++DI   LG+GASGDV A  ++ R VA+K FK+ +SPDG A DE+AV CFVDHP L + +G++  P  +LV+ERI G PLALKPNF S+LRCRW  G  F + FV +V   V
Sbjct:  231 LAWLSLAGNPACQPAPPIRPDILPLTLSQLDIATALGDGASGDVFAAKFQERDVAIKIFKAESSPDGHARDEIAVTCFVDHPNLIKVIGIIDHPH-ALVLERIWGVPLALKPNFESLLRCRWTPGQTFTAAFVWNVAKSV 369          
BLAST of mRNA_P-wetherbeei_contig7012.1.2 vs. uniprot
Match: A0A8J9S5V3_9CHLO (Probable leucine-rich repeat-containing protein 7 at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S5V3_9CHLO)

HSP 1 Score: 129 bits (324), Expect = 1.460e-31
Identity = 67/139 (48.20%), Postives = 89/139 (64.03%), Query Frame = 1
Query:  232 LSWLSLAGCAWCPERPPHAGLEELKPAEVDI---LGEGASGDVVAGVWRGRPVAVKTFKSAASPDGRAADELAVACFVDHPRLARAVGVVRRPELSLVMERIPGKPLALKPNFASVLRCRWPEGARFRSRFVLSVGMQV 639
            L+W+SLAG   CP  P    + ++    + +   LGEGASGDV A    G  VAVK FK   SPDG+AADE+AV C+V+HP L R +  +++P  +LV++R+ G+PLA KPN  S+LRCRWP  A F S FV  V + V
Sbjct:  219 LAWMSLAGNPACPPPPVRGHIADVTIEHLSLGVPLGEGASGDVFAAHMEGEEVAVKVFKGEVSPDGKAADEIAVTCYVNHPHLTRVLATLQQPH-ALVLKRVAGRPLAAKPNLQSLLRCRWPPDAAFSSAFVARVALCV 356          
BLAST of mRNA_P-wetherbeei_contig7012.1.2 vs. uniprot
Match: I0Z463_COCSC (L domain-like protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z463_COCSC)

HSP 1 Score: 112 bits (279), Expect = 1.790e-25
Identity = 63/138 (45.65%), Postives = 77/138 (55.80%), Query Frame = 1
Query:  235 SWLSLAGCAWCPERPPHAGLEELKPAEVDI---LGEGASGDVVAGVWRGRPVAVKTFKSAASPDGRAADELAVACFVDHPRLARAVGVVRRPELSLVMERIPGKPLALKPNFASVLRCRWPEGARFRSRFVLSVGMQV 639
            +W+SLAG   CP+ P       +   ++ +   LGEGASGDV A       VAVK FK   SPDGRAADE+AV C+VDHP L R               R+ G+PLA KPN  S+LRCRWP G+ F   FV  V + V
Sbjct:  189 AWMSLAGNPICPQTPVRGQFPAMTIDQLSLGVSLGEGASGDVYAAKLGAEDVAVKVFKGEVSPDGRAADEIAVTCYVDHPHLTR---------------RVQGQPLAGKPNLQSLLRCRWPPGSAFSPGFVARVALCV 311          
BLAST of mRNA_P-wetherbeei_contig7012.1.2 vs. uniprot
Match: A0A6H5L0B3_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B3_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 9.200e-22
Identity = 66/156 (42.31%), Postives = 80/156 (51.28%), Query Frame = 1
Query:  307 PAEVDILGE----GASGDVVAGVWRGRPVAVKTFKSAASPDGRAADELAVACFVDHPRLARAVGVVRRPELS-----------------------------------------LVMERIPGKPLALKPNFASVLRCRWPEGARFRSRFVLSVGMQV 639
            P E  +LGE    GASG+V AGV+RGR VAVK FK+   PDG A DEL VA  VDHP L +++GVV    +                                          LVMER+ G+PLA KP+F+SVLRCRW  G RF    VL+V +QV
Sbjct:   39 PREEVVLGERLGSGASGEVFAGVYRGRDVAVKVFKADIGPDGNARDELDVALTVDHPNLTKSLGVVHASSIKPSGGSISRSESEVAAXXXXXXXXXXXXXXXXXGDEIENLRWLVMERVVGRPLAEKPDFSSVLRCRWGSGRRFEPVLVLAVLLQV 194          
BLAST of mRNA_P-wetherbeei_contig7012.1.2 vs. uniprot
Match: A0A250XG00_9CHLO (Protein kinase domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XG00_9CHLO)

HSP 1 Score: 95.1 bits (235), Expect = 4.500e-19
Identity = 53/136 (38.97%), Postives = 78/136 (57.35%), Query Frame = 1
Query:  226 ARLSWLSLAGCAWCPERP-PHAGLEELKPAEVDIL----GEGASGDVVAGVWRGRPVAVKTFKSAASPDGRAADELAVACFVDHPRLARAVGVVRRPE-----------LSLVMERIPGKPLALKPNFASVLRCRW 585
            + L+W SL G   C + P P   +  +   ++ +L    G+GASG+V+   ++GR VAVK+F+S  SPDGR A+E+A+AC VDHP L R +  V+              +++VME   G PLA KP    +LRC+W
Sbjct:  306 SNLAWFSLGGNLACRQMPKPRPDVVSIAMEDIQLLNEKLGDGASGEVLRASYQGREVAVKSFRSDVSPDGRTAEEVAIACHVDHPNLTRVLATVQSAGQTSAPNSVAAVIAVVMEIYNGAPLAAKPTSEHLLRCKW 441          
BLAST of mRNA_P-wetherbeei_contig7012.1.2 vs. uniprot
Match: A0A699Z0X2_HAELA (Protein kinase domain-containing protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699Z0X2_HAELA)

HSP 1 Score: 75.5 bits (184), Expect = 3.180e-13
Identity = 44/122 (36.07%), Postives = 64/122 (52.46%), Query Frame = 1
Query:  325 LGEGASGDVVAG--VWRGRPVAVKTFKSAASPDGRAADELAVACFVDHPRLARAVGVVRRPELS------------------LVMERIPGKPLALKPNFASVLRCRWPEGARFRSRFVLSVG 630
            LGEGASG+V     +  G  +A K F++  SPDGR  +E+A+AC VDHP L R   VV     +                  L+M+ +PG+PLA KP    +LRC+W    +F  +  +++G
Sbjct:    2 LGEGASGEVFIARIIATGEVLAAKVFRADISPDGRTVEEVAIACAVDHPHLTRVRAVVALAGATPATAXXXXXXXXXXXXPMLLMDLVPGQPLAAKPTSQHLLRCKWRPDTQFSLQQAVAIG 123          
BLAST of mRNA_P-wetherbeei_contig7012.1.2 vs. uniprot
Match: A0A699YPZ8_HAELA (Protein kinase domain-containing protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YPZ8_HAELA)

HSP 1 Score: 72.4 bits (176), Expect = 7.400e-12
Identity = 49/136 (36.03%), Postives = 65/136 (47.79%), Query Frame = 1
Query:  325 LGEGASGDVVAG--VWRGRPVAVKTFKSAASPDGRAADELAVACFVDHPRLARAVGVVR----------------RPELSLVMERIPGKPLALKPNFASVLRC----------------RWPEGARFRSRFVLSVG 630
            LGEGASG+V     V  G  +A K F++  SPDGR  +E+A+AC VDHP L R   VV                  P   L+M+ +PG+PLA KP    +LRC                RW    +F  + VL++G
Sbjct:   45 LGEGASGEVFIARIVATGEVLAAKIFRADVSPDGRTVEEVAIACAVDHPNLTRVRAVVALAPPAPAPATXXXXXXXPAPMLLMDLVPGQPLAAKPTSQHLLRCNHVITMVPGVMVVLALRWRPDTQFSLQQVLAIG 180          
BLAST of mRNA_P-wetherbeei_contig7012.1.2 vs. uniprot
Match: A0A6S9RH76_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A6S9RH76_CHRCT)

HSP 1 Score: 70.5 bits (171), Expect = 1.310e-10
Identity = 87/211 (41.23%), Postives = 98/211 (46.45%), Query Frame = 1
Query:   19 SLVELYLTDNKLMALPPSLGRCRRLRKLQASFXXXXXXXXXXXXXXXLELFRAAVNPNLTYVPAELTTMARLSWLSLAG------CAWCPERPPHAGLEELKPAEVDILGEGASGDVVAGVWRGRP----VAVKTFKSAAS-PDGRAADELAVACFVDHPRLARAVGVVRRPELSLVMERIPG-KPLALKPNFASVLRCRWPEGARFRSRF 615
            SL  L LTDNKL ALP ++GR R L K     XXXXXXXXXXXXXXX                     M RL+WL+LAG      C      P    L EL+  E   LG GA G V    W   P    VAVK F +AAS  DG    E+  A  V H    R +GVV  P L LV E + G   L   P+FAS  R  +  G  F   F
Sbjct:  227 SLRWLILTDNKLSALPKTIGRLRGLHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFA-MPRLAWLALAGNPCVQACTSLASSPRSVRLSELQLHEE--LGRGAGGTVRRATWSASPDAPAVAVKLFNAAASVSDGDPIHEVHAAGAVSHANTCRVLGVVDEP-LGLVQELLSGYSSLGNPPDFASCTRDTYVAGTAFAPPF 433          
BLAST of mRNA_P-wetherbeei_contig7012.1.2 vs. uniprot
Match: F2UE84_SALR5 (Serine/threonine protein kinase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UE84_SALR5)

HSP 1 Score: 67.8 bits (164), Expect = 1.190e-9
Identity = 44/127 (34.65%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  253 GCAWCPERPPHAGLEELKPAEVDILGEGASGDVVAGVWRGRPVAVKTFKSAASPDGRAADELAVACFVDHPRLARAVGVVRRPELSLVMERIPG--KPLALKPNFASVLRCRWPEGARFRSRFVLSV 627
            G A   ++P      +L+  EV  LGEG SG V  G ++G  VAVK FKS +S DG   DE+A+A    HP +    G++ +P+  +V+E +    +PLA  P+  + LRC +P       +  L++
Sbjct:  397 GQAPASQQPQTIDASQLRMGEV--LGEGTSGVVHRGTYKGAAVAVKLFKSQSS-DGSFWDEMAIAKLFRHPNITAVHGIITKPQPGMVLEYLSDDFQPLASPPDAWTTLRCTYPAELELTPQHTLAI 520          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7012.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FJA1_ECTSI4.260e-3341.12Putative Leucine Rich Repeat Protein Kinase n=1 Ta... [more]
A0A5J4XR07_9CHLO1.380e-3251.43Kinase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 Re... [more]
A0A8J9S5V3_9CHLO1.460e-3148.20Probable leucine-rich repeat-containing protein 7 ... [more]
I0Z463_COCSC1.790e-2545.65L domain-like protein n=1 Tax=Coccomyxa subellipso... [more]
A0A6H5L0B3_9PHAE9.200e-2242.31Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A250XG00_9CHLO4.500e-1938.97Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A699Z0X2_HAELA3.180e-1336.07Protein kinase domain-containing protein (Fragment... [more]
A0A699YPZ8_HAELA7.400e-1236.03Protein kinase domain-containing protein (Fragment... [more]
A0A6S9RH76_CHRCT1.310e-1041.23Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
F2UE84_SALR51.190e-934.65Serine/threonine protein kinase n=1 Tax=Salpingoec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7012contigP-wetherbeei_contig7012:15..1354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog248742.XP_005649976.1
PFAMsLRR_8,Pkinase
Model size639
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.94e-26
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota,37VMG@33090|Viridiplantae,34I0K@3041|Chlorophyta
Ec32 ortholog descriptionPutative Leucine Rich Repeat Protein Kinase
Ec32 orthologEc-12_008310.1
DescriptionLeucine-rich repeats, outliers
Cds size639
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186952.3064494-CDS-P-wetherbeei_contig7012:14..3321683186952.3064494-CDS-P-wetherbeei_contig7012:14..332Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7012 15..332 -
1683186952.3189445-CDS-P-wetherbeei_contig7012:695..8431683186952.3189445-CDS-P-wetherbeei_contig7012:695..843Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7012 696..843 -
1683186952.329638-CDS-P-wetherbeei_contig7012:1181..13541683186952.329638-CDS-P-wetherbeei_contig7012:1181..1354Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7012 1182..1354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7012.1.2prot_P-wetherbeei_contig7012.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7012 15..1354 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7012.1.2

>prot_P-wetherbeei_contig7012.1.2 ID=prot_P-wetherbeei_contig7012.1.2|Name=mRNA_P-wetherbeei_contig7012.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=213bp
TIGGLESLVELYLTDNKLMALPPSLGRCRRLRKLQASFNDLRALPKEMGD
LEELELFRAAVNPNLTYVPAELTTMARLSWLSLAGCAWCPERPPHAGLEE
LKPAEVDILGEGASGDVVAGVWRGRPVAVKTFKSAASPDGRAADELAVAC
FVDHPRLARAVGVVRRPELSLVMERIPGKPLALKPNFASVLRCRWPEGAR
FRSRFVLSVGMQV
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mRNA from alignment at P-wetherbeei_contig7012:15..1354-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7012.1.2 ID=mRNA_P-wetherbeei_contig7012.1.2|Name=mRNA_P-wetherbeei_contig7012.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1340bp|location=Sequence derived from alignment at P-wetherbeei_contig7012:15..1354- (Phaeothamnion wetherbeei SAG_119_79)
ACGATCGGCGGGCTGGAGTCGCTGGTGGAACTGTACCTGACAGACAACAA GCTGATGGCGCTGCCGCCGTCGCTGGGCCGCTGCCGGCGGCTGCGCAAGC TGCAGGCATCATTCAACGACCTGCGAGCGTTGCCGAAGGAGATGGGGGAC CTCGAGGAGCTCGAACTCTTCCGGTGAGCGTATGCAGCGGCGCCTCTCAA TTGTTTGTGGCGATGTATGCCCGTTGTTGCCTTTTACGTCTTAGTTTTGG GTCCAACGGAGGAGTCCCTGTACCTTGTGGATGGCGGCGCTCTCATCGGC TCCGACCGTCTTTCTCGTAGGAAGAAACCTTACCTACGGCCAGCTTTTGT GCTCGCTGGTCTAGCAAACGAAGCGGCTGCATCCGTTGGGAAATTTCCTG CTGAAACCTTCTAATTAGAGTTTTGCCGCCTGCCACCCGAGGCCGTCTGC ACGCTCCTCTTTACGCGTCTTCTATTCCTGCCTGGCCGTTGATTCCTGTG CGCCGTGGCAGGGCGGCCGTCAACCCGAACCTGACTTACGTGCCGGCGGA GCTGACGACTATGGCACGCCTCAGCTGGCTGTCCCTGGCGGGCTGCGCGT GGTGTCCGGAGCGGCCGCCGCACGCGGGCCTCGAGGAGCTCAAGCCGGCG GAGGTCGACGTCGGTGGGGGGGGGGCGGTGGGCAACAACGGTGGCGGGGG CAGAAATCCCGCCGCGGCCGCCGCCGAGGTTGCATCTGCCGATGCGCCGG CCGTCCCCACCGCCGCACAAGCGGATGCCGCCGCGATCGCCGCCGCCGTG CCCACGCCTGCCGGCGCCCAATCCGGCGCCGGCGGCAGCTGCGGGTATAC TGTCCGGTTCGCTGACGGCGGCACCTGCGGGTATACTGTCCGGTTCGCTG ACGGCGGCACCTGCGGCGGCGGCGGCGTTAATTGCGGAGGTAAAGGGAGC GGCGGCGCCGACGACGACGACGCTTCCGGCCGCTGCGGCGGCTGCGGGCT GTCGCCTTTGCCGCCGGGCGAGATCCTGGGGGAGGGCGCCAGCGGCGATG TCGTCGCCGGTGTCTGGCGCGGCCGGCCGGTCGCCGTCAAGACCTTCAAA TCCGCGGCGTCCCCGGACGGCCGCGCCGCGGACGAGCTGGCGGTGGCGTG CTTCGTCGACCACCCGCGGCTGGCGCGCGCCGTCGGTGTCGTGCGACGGC CGGAGCTCAGCCTGGTGATGGAGCGGATCCCTGGCAAGCCTCTGGCGCTC AAGCCGAACTTTGCGAGCGTGCTGCGCTGCCGGTGGCCCGAGGGCGCGCG GTTCCGGTCACGGTTCGTGCTCAGCGTCGGCATGCAGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7012:15..1354-

>mRNA_P-wetherbeei_contig7012.1.2 ID=mRNA_P-wetherbeei_contig7012.1.2|Name=mRNA_P-wetherbeei_contig7012.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=639bp|location=Sequence derived from alignment at P-wetherbeei_contig7012:15..1354- (Phaeothamnion wetherbeei SAG_119_79)
ACGATCGGCGGGCTGGAGTCGCTGGTGGAACTGTACCTGACAGACAACAA
GCTGATGGCGCTGCCGCCGTCGCTGGGCCGCTGCCGGCGGCTGCGCAAGC
TGCAGGCATCATTCAACGACCTGCGAGCGTTGCCGAAGGAGATGGGGGAC
CTCGAGGAGCTCGAACTCTTCCGGGCGGCCGTCAACCCGAACCTGACTTA
CGTGCCGGCGGAGCTGACGACTATGGCACGCCTCAGCTGGCTGTCCCTGG
CGGGCTGCGCGTGGTGTCCGGAGCGGCCGCCGCACGCGGGCCTCGAGGAG
CTCAAGCCGGCGGAGGTCGACATCCTGGGGGAGGGCGCCAGCGGCGATGT
CGTCGCCGGTGTCTGGCGCGGCCGGCCGGTCGCCGTCAAGACCTTCAAAT
CCGCGGCGTCCCCGGACGGCCGCGCCGCGGACGAGCTGGCGGTGGCGTGC
TTCGTCGACCACCCGCGGCTGGCGCGCGCCGTCGGTGTCGTGCGACGGCC
GGAGCTCAGCCTGGTGATGGAGCGGATCCCTGGCAAGCCTCTGGCGCTCA
AGCCGAACTTTGCGAGCGTGCTGCGCTGCCGGTGGCCCGAGGGCGCGCGG
TTCCGGTCACGGTTCGTGCTCAGCGTCGGCATGCAGGTG
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