mRNA_P-wetherbeei_contig7008.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7008.4.1
Unique NamemRNA_P-wetherbeei_contig7008.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7008.4.1 vs. uniprot
Match: A0A351T6E8_9PROT (Methylenetetrahydrofolate reductase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T6E8_9PROT)

HSP 1 Score: 93.2 bits (230), Expect = 7.680e-22
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:    1 SFEFFPPKTPEMEETLWRSIHRLAPFQPQFVSVTYGAGGSTRQRT 135
            SFEFFPPKTPEMEETLWRSI RLAPFQP+FVSVTYGAGGSTRQRT
Sbjct:    4 SFEFFPPKTPEMEETLWRSITRLAPFQPEFVSVTYGAGGSTRQRT 48
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BLAST of mRNA_P-wetherbeei_contig7008.4.1 vs. uniprot
Match: A0A3C0TWY1_9PROT (Methylenetetrahydrofolate reductase (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TWY1_9PROT)

HSP 1 Score: 86.3 bits (212), Expect = 3.120e-20
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 SFEFFPPKTPEMEETLWRSIHRLAPFQPQFVSVTYGAGGSTRQRT 135
            SFEFFPPKT EMEE LWRSI RLAPF+P+FVSVTYGAGGSTRQRT
Sbjct:   28 SFEFFPPKTQEMEEVLWRSITRLAPFRPKFVSVTYGAGGSTRQRT 72
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BLAST of mRNA_P-wetherbeei_contig7008.4.1 vs. uniprot
Match: A0A2N3EC14_9PROT (Methylenetetrahydrofolate reductase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2N3EC14_9PROT)

HSP 1 Score: 87.4 bits (215), Expect = 1.510e-19
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 SFEFFPPKTPEMEETLWRSIHRLAPFQPQFVSVTYGAGGSTRQRT 135
            SFEFFPPKTPEME+TLWRSI RL P QP+FVSVTYGAGGSTR+RT
Sbjct:   16 SFEFFPPKTPEMEQTLWRSIRRLEPLQPEFVSVTYGAGGSTRERT 60
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BLAST of mRNA_P-wetherbeei_contig7008.4.1 vs. uniprot
Match: A0A2D8RWA7_9HYPH (Methylenetetrahydrofolate reductase n=6 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2D8RWA7_9HYPH)

HSP 1 Score: 87.4 bits (215), Expect = 1.510e-19
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 SFEFFPPKTPEMEETLWRSIHRLAPFQPQFVSVTYGAGGSTRQRT 135
            SFEFFPPKTPEMEETLW+SI RL P QP+FVSVTYGAGGSTR+RT
Sbjct:   16 SFEFFPPKTPEMEETLWKSIRRLEPLQPEFVSVTYGAGGSTRERT 60
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BLAST of mRNA_P-wetherbeei_contig7008.4.1 vs. uniprot
Match: A0A2W4MMI3_9PROT (Methylenetetrahydrofolate reductase (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4MMI3_9PROT)

HSP 1 Score: 84.3 bits (207), Expect = 1.810e-19
Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 SFEFFPPKTPEMEETLWRSIHRLAPFQPQFVSVTYGAGGSTRQRT 135
            SFEFFPPKTPEMEETLW SI RLAP  P FVSVTYGAGGSTR+RT
Sbjct:   19 SFEFFPPKTPEMEETLWASIKRLAPLGPHFVSVTYGAGGSTRERT 63
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BLAST of mRNA_P-wetherbeei_contig7008.4.1 vs. uniprot
Match: A0A5N3PBH4_9HYPH (Methylenetetrahydrofolate reductase n=1 Tax=Microvirga brassicacearum TaxID=2580413 RepID=A0A5N3PBH4_9HYPH)

HSP 1 Score: 87.0 bits (214), Expect = 2.130e-19
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 SFEFFPPKTPEMEETLWRSIHRLAPFQPQFVSVTYGAGGSTRQRT 135
            SFEFFPPKTPEME TLW SI RLAP QPQFVSVTYGAGGSTR+RT
Sbjct:   19 SFEFFPPKTPEMEATLWSSIERLAPLQPQFVSVTYGAGGSTRERT 63
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BLAST of mRNA_P-wetherbeei_contig7008.4.1 vs. uniprot
Match: A0A4Q9GSW3_9HYPH (Methylenetetrahydrofolate reductase n=1 Tax=Hansschlegelia quercus TaxID=2528245 RepID=A0A4Q9GSW3_9HYPH)

HSP 1 Score: 87.0 bits (214), Expect = 2.220e-19
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 SFEFFPPKTPEMEETLWRSIHRLAPFQPQFVSVTYGAGGSTRQRT 135
            SFEFFPPKTPEMEETLWRSI RL+P QP F+SVTYGAGGSTR+RT
Sbjct:   17 SFEFFPPKTPEMEETLWRSIERLSPLQPTFMSVTYGAGGSTRERT 61
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BLAST of mRNA_P-wetherbeei_contig7008.4.1 vs. uniprot
Match: A0A7W6N7F9_9HYPH (Methylenetetrahydrofolate reductase n=1 Tax=Microvirga flocculans TaxID=217168 RepID=A0A7W6N7F9_9HYPH)

HSP 1 Score: 83.6 bits (205), Expect = 4.170e-19
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 SFEFFPPKTPEMEETLWRSIHRLAPFQPQFVSVTYGAGGSTRQRT 135
            SFEFFPPK+PEME TLW SI RLAP  PQFVSVTYGAGGSTR+RT
Sbjct:   19 SFEFFPPKSPEMEATLWSSIQRLAPLNPQFVSVTYGAGGSTRERT 63
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BLAST of mRNA_P-wetherbeei_contig7008.4.1 vs. uniprot
Match: A0A2W5KFQ1_STANO (Methylenetetrahydrofolate reductase n=1 Tax=Starkeya novella TaxID=921 RepID=A0A2W5KFQ1_STANO)

HSP 1 Score: 85.5 bits (210), Expect = 8.320e-19
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 SFEFFPPKTPEMEETLWRSIHRLAPFQPQFVSVTYGAGGSTRQRT 135
            SFEFFPPKTPEMEET+WRSI RLAP  P F+SVTYGAGGSTR+RT
Sbjct:   17 SFEFFPPKTPEMEETMWRSIRRLAPLHPTFMSVTYGAGGSTRERT 61
[Close]
BLAST of mRNA_P-wetherbeei_contig7008.4.1 vs. uniprot
Match: A0A516H301_9PROT (Methylenetetrahydrofolate reductase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A516H301_9PROT)

HSP 1 Score: 85.5 bits (210), Expect = 8.520e-19
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 SFEFFPPKTPEMEETLWRSIHRLAPFQPQFVSVTYGAGGSTRQRT 135
            SFEFFPPKTPEMEE+LWRS+ RLAP  P+FVSVTYGAGGSTR+RT
Sbjct:   21 SFEFFPPKTPEMEESLWRSVMRLAPLSPRFVSVTYGAGGSTRERT 65
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7008.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A351T6E8_9PROT7.680e-2295.56Methylenetetrahydrofolate reductase n=1 Tax=Alphap... [more]
A0A3C0TWY1_9PROT3.120e-2088.89Methylenetetrahydrofolate reductase (Fragment) n=1... [more]
A0A2N3EC14_9PROT1.510e-1986.67Methylenetetrahydrofolate reductase n=2 Tax=Alphap... [more]
A0A2D8RWA7_9HYPH1.510e-1986.67Methylenetetrahydrofolate reductase n=6 Tax=Alphap... [more]
A0A2W4MMI3_9PROT1.810e-1986.67Methylenetetrahydrofolate reductase (Fragment) n=1... [more]
A0A5N3PBH4_9HYPH2.130e-1988.89Methylenetetrahydrofolate reductase n=1 Tax=Microv... [more]
A0A4Q9GSW3_9HYPH2.220e-1986.67Methylenetetrahydrofolate reductase n=1 Tax=Hanssc... [more]
A0A7W6N7F9_9HYPH4.170e-1984.44Methylenetetrahydrofolate reductase n=1 Tax=Microv... [more]
A0A2W5KFQ1_STANO8.320e-1984.44Methylenetetrahydrofolate reductase n=1 Tax=Starke... [more]
A0A516H301_9PROT8.520e-1984.44Methylenetetrahydrofolate reductase n=3 Tax=Alphap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7008contigP-wetherbeei_contig7008:3072..3206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog402881.Plav_2401
Preferred namemetF
PFAMsMTHFR
Model size135
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00081
KEGG koko:K00297
KEGG ReactionR01224,R07168
KEGG Pathwayko00670,ko00720,ko01100,ko01120,ko01200,ko01523,map00670,map00720,map01100,map01120,map01200,map01523
KEGG ModuleM00377
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004489,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114
Exons1
Evalue9.05e-21
EggNOG OGsCOG0685@1|root,COG0685@2|Bacteria,1MUC9@1224|Proteobacteria,2TQZA@28211|Alphaproteobacteria,1JNKJ@119043|Rhodobiaceae
EC1.5.1.20
DescriptionMethylenetetrahydrofolate reductase
Cds size135
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186952.1944163-CDS-P-wetherbeei_contig7008:3071..32061683186952.1944163-CDS-P-wetherbeei_contig7008:3071..3206Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7008 3072..3206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7008.4.1prot_P-wetherbeei_contig7008.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7008 3072..3206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7008.4.1

>prot_P-wetherbeei_contig7008.4.1 ID=prot_P-wetherbeei_contig7008.4.1|Name=mRNA_P-wetherbeei_contig7008.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=45bp
SFEFFPPKTPEMEETLWRSIHRLAPFQPQFVSVTYGAGGSTRQRT
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mRNA from alignment at P-wetherbeei_contig7008:3072..3206+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7008.4.1 ID=mRNA_P-wetherbeei_contig7008.4.1|Name=mRNA_P-wetherbeei_contig7008.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=135bp|location=Sequence derived from alignment at P-wetherbeei_contig7008:3072..3206+ (Phaeothamnion wetherbeei SAG_119_79)
TCGTTTGAATTTTTTCCGCCCAAAACGCCAGAGATGGAAGAAACCTTGTG
GCGTTCAATTCACCGTCTTGCGCCGTTCCAGCCGCAATTTGTTTCCGTGA
CCTATGGTGCGGGGGGCAGCACCCGTCAGCGGACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7008:3072..3206+

>mRNA_P-wetherbeei_contig7008.4.1 ID=mRNA_P-wetherbeei_contig7008.4.1|Name=mRNA_P-wetherbeei_contig7008.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=135bp|location=Sequence derived from alignment at P-wetherbeei_contig7008:3072..3206+ (Phaeothamnion wetherbeei SAG_119_79)
TCGTTTGAATTTTTTCCGCCCAAAACGCCAGAGATGGAAGAAACCTTGTG
GCGTTCAATTCACCGTCTTGCGCCGTTCCAGCCGCAATTTGTTTCCGTGA
CCTATGGTGCGGGGGGCAGCACCCGTCAGCGGACC
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