mRNA_P-wetherbeei_contig70.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig70.1.1
Unique NamemRNA_P-wetherbeei_contig70.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig70.1.1 vs. uniprot
Match: A0A5B7DFP2_PORTR (Protein MCM10 n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=A0A5B7DFP2_PORTR)

HSP 1 Score: 68.2 bits (165), Expect = 2.420e-11
Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   19 LERREALVEKVKEITELKVRGSYCRTCRVTRDRGSVACHDRGHIQNDVTATRRFFECRKCRARCTTLDARLPATCCGRCGANEW 270
            LE+RE L EK+  + E+ +    C  CR   ++ S  C +  H+   VTA +RFFEC+ C+ R ++LD +LP   CG C  + W
Sbjct:  319 LEKREMLEEKLSSVMEISITAYVCVKCRYMSEKASDLCKEENHLLKTVTAKKRFFECKNCKQRTSSLD-KLPRKACGNCDHSSW 401          
BLAST of mRNA_P-wetherbeei_contig70.1.1 vs. uniprot
Match: UPI001E1D1A92 (protein MCM10 homolog n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1D1A92)

HSP 1 Score: 68.2 bits (165), Expect = 2.590e-11
Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   19 LERREALVEKVKEITELKVRGSYCRTCRVTRDRGSVACHDRGHIQNDVTATRRFFECRKCRARCTTLDARLPATCCGRCGANEW 270
            LE+RE L EK+  + E+ +    C  CR   ++ S  C +  H+   VTA +RFFEC+ C+ R ++LD +LP   CG C  + W
Sbjct:  768 LEKREMLEEKLSSVMEISITAYVCVKCRYMSEKASDLCKEENHLLKTVTAKKRFFECKNCKQRTSSLD-KLPRKACGNCDHSSW 850          
BLAST of mRNA_P-wetherbeei_contig70.1.1 vs. uniprot
Match: A0A0P4WDZ6_SCYOL (Protein MCM10 homolog n=2 Tax=Scylla olivacea TaxID=85551 RepID=A0A0P4WDZ6_SCYOL)

HSP 1 Score: 65.9 bits (159), Expect = 1.680e-10
Identity = 32/84 (38.10%), Postives = 46/84 (54.76%), Query Frame = 1
Query:   19 LERREALVEKVKEITELKVRGSYCRTCRVTRDRGSVACHDRGHIQNDVTATRRFFECRKCRARCTTLDARLPATCCGRCGANEW 270
            LE+RE L EK+  + EL +    C  CR   ++ S  C +  H    VTA +RFFEC+ C+ R ++LD +LP   C  C  + W
Sbjct:  762 LEKREMLEEKLSSVMELSITAYVCMKCRYMSEKASDLCKEENHELKTVTAKKRFFECKNCKQRTSSLD-KLPRKACANCDRSSW 844          
BLAST of mRNA_P-wetherbeei_contig70.1.1 vs. uniprot
Match: A0A6A0GX63_HYAAZ (Protein MCM10 homolog n=3 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0GX63_HYAAZ)

HSP 1 Score: 60.1 bits (144), Expect = 1.790e-8
Identity = 32/90 (35.56%), Postives = 46/90 (51.11%), Query Frame = 1
Query:    1 DRALERLERREALVEKVKEITELKVRGSYCRTCRVTRDRGSVACHDRGHIQNDVTATRRFFECRKCRARCTTLDARLPATCCGRCGANEW 270
            D+   +LE +E L EK+    E+      C  C+      S  C D+GH+   V A++RFFEC KC+ R  TL+ ++P   CG C    W
Sbjct:  654 DKYYSKLEYKEKLEEKLASTMEVPTNAVVCIKCKYQAVLQSQFCKDQGHVVKAVKASKRFFECSKCKKRTVTLE-KMPVKSCGNCEQTSW 742          
BLAST of mRNA_P-wetherbeei_contig70.1.1 vs. uniprot
Match: A0A6A7G1I4_9CRUS (Protein MCM10 homolog n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G1I4_9CRUS)

HSP 1 Score: 59.7 bits (143), Expect = 2.480e-8
Identity = 29/85 (34.12%), Postives = 46/85 (54.12%), Query Frame = 1
Query:   16 RLERREALVEKVKEITELKVRGSYCRTCRVTRDRGSVACHDRGHIQNDVTATRRFFECRKCRARCTTLDARLPATCCGRCGANEW 270
            +LE++E L EK+  I E+      C+ C+      S  C D GH+   V A++RFFEC +C+ R   L+ ++P   C  C ++ W
Sbjct:  860 KLEQKEQLEEKLTSIMEVATNAVICKICKYQAVIQSQFCKDEGHVVKSVKASKRFFECSRCKRRTVCLE-KMPTKACSNCESSSW 943          
BLAST of mRNA_P-wetherbeei_contig70.1.1 vs. uniprot
Match: UPI0010BD4D9F (protein MCM10 homolog n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0010BD4D9F)

HSP 1 Score: 58.9 bits (141), Expect = 4.560e-8
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = 1
Query:   16 RLERREALVEKVKEITELKVRGSYCRTCRVTRDRGSVACHDRGHIQNDVTATRRFFECRKCRARCTTLDARLPATCCGRCGANEW 270
            +LE++EAL +K+  I  +KV+   C  C  T    S  C   GH      AT+RFF+C+ C+ R T   ++LP+  C RCG + W
Sbjct:  660 KLEKKEALEQKMCSIMSVKVKVVSCSVCNYTAVTASELCRKEGHPTKTHDATKRFFQCQDCKNR-TVSFSKLPSKPCRRCGGSSW 743          
BLAST of mRNA_P-wetherbeei_contig70.1.1 vs. uniprot
Match: UPI000F5514A4 (protein MCM10 homolog n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F5514A4)

HSP 1 Score: 58.2 bits (139), Expect = 8.290e-8
Identity = 30/88 (34.09%), Postives = 47/88 (53.41%), Query Frame = 1
Query:   19 LERREALVEKVKEITELKVRGSYCRTCRVTRDRGSVACHDRGHIQNDVTATRRFFECRKCRARCTTLDARLPATCCGRCGANEWAASS 282
            LE++E L +K+K ITELKV+   C+ C    +  S  CH   H      A ++FF C+ C+ R  +  + +P   C +CGA  +  +S
Sbjct:  408 LEKKERLEDKMKTITELKVKVVCCKQCNYVAEGASELCHKEKHALKYCKALKKFFVCKDCKTRTVSYGSPIPKHPCRQCGATNYQKTS 495          
BLAST of mRNA_P-wetherbeei_contig70.1.1 vs. uniprot
Match: A0A132AEW8_SARSC (Protein MCM10 homolog n=2 Tax=Sarcoptes scabiei TaxID=52283 RepID=A0A132AEW8_SARSC)

HSP 1 Score: 58.2 bits (139), Expect = 8.390e-8
Identity = 33/80 (41.25%), Postives = 42/80 (52.50%), Query Frame = 1
Query:   19 LERREALVEKVKEITELKVRGSYCRTCRVTRDRGSVACHDRGHIQNDVTATRRFFECRKCRARCTTLDARLPATCCGRCG 258
            LE+RE    ++ EI E+ V+   C  CR T    S  C  + H      A RRFF C+ C  R TTLD+  PAT C +CG
Sbjct:  520 LEKRENYENRLAEIKEINVKVVTCTECRYTSTSQSDFCKSKNHQIRFHEAKRRFFSCKYCHHRITTLDSMFPATDCPKCG 599          
BLAST of mRNA_P-wetherbeei_contig70.1.1 vs. uniprot
Match: A0A1V9X4Z2_9ACAR (Protein MCM10 homolog n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9X4Z2_9ACAR)

HSP 1 Score: 58.2 bits (139), Expect = 8.520e-8
Identity = 33/85 (38.82%), Postives = 45/85 (52.94%), Query Frame = 1
Query:   16 RLERREALVEKVKEITELKVRGSYCRTCRVTRDRGSVACHDRGHIQNDVTATRRFFECRKCRARCTTLDARLPATCCGRCGANEW 270
            +LER+EAL +K+     +KV+   C TCR T    S  C   GH      AT+RFF C  C+ R T    +LP+  C RC + +W
Sbjct:  664 KLERKEALEQKMLSTMSVKVKVVSCPTCRYTAVTASEYCQKEGHATKTHDATKRFFRCIHCKNR-TVSFCKLPSKPCKRCNSEDW 747          
BLAST of mRNA_P-wetherbeei_contig70.1.1 vs. uniprot
Match: A0A3M6UHF6_POCDA (Protein MCM10 homolog n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UHF6_POCDA)

HSP 1 Score: 58.2 bits (139), Expect = 8.540e-8
Identity = 30/88 (34.09%), Postives = 47/88 (53.41%), Query Frame = 1
Query:   19 LERREALVEKVKEITELKVRGSYCRTCRVTRDRGSVACHDRGHIQNDVTATRRFFECRKCRARCTTLDARLPATCCGRCGANEWAASS 282
            LE++E L +K+K ITELKV+   C+ C    +  S  CH   H      A ++FF C+ C+ R  +  + +P   C +CGA  +  +S
Sbjct:  697 LEKKERLEDKMKTITELKVKVVCCKQCNYVAEGASELCHKEKHALKYCKALKKFFVCKDCKTRTVSYGSPIPKHPCRQCGATNYQKTS 784          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig70.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5B7DFP2_PORTR2.420e-1138.10Protein MCM10 n=1 Tax=Portunus trituberculatus Tax... [more]
UPI001E1D1A922.590e-1138.10protein MCM10 homolog n=1 Tax=Portunus tritubercul... [more]
A0A0P4WDZ6_SCYOL1.680e-1038.10Protein MCM10 homolog n=2 Tax=Scylla olivacea TaxI... [more]
A0A6A0GX63_HYAAZ1.790e-835.56Protein MCM10 homolog n=3 Tax=Hyalella azteca TaxI... [more]
A0A6A7G1I4_9CRUS2.480e-834.12Protein MCM10 homolog n=1 Tax=Hirondellea gigas Ta... [more]
UPI0010BD4D9F4.560e-837.65protein MCM10 homolog n=1 Tax=Galendromus occident... [more]
UPI000F5514A48.290e-834.09protein MCM10 homolog n=1 Tax=Pocillopora damicorn... [more]
A0A132AEW8_SARSC8.390e-841.25Protein MCM10 homolog n=2 Tax=Sarcoptes scabiei Ta... [more]
A0A1V9X4Z2_9ACAR8.520e-838.82Protein MCM10 homolog n=1 Tax=Tropilaelaps mercede... [more]
A0A3M6UHF6_POCDA8.540e-834.09Protein MCM10 homolog n=1 Tax=Pocillopora damicorn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig70contigP-wetherbeei_contig70:1198..1479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LM23
Preferred nameMCM10
PFAMsMcm10,zf-primase
Model size282
Max annot lvl2759|Eukaryota
KEGG koko:K10736
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000724,GO:0000725,GO:0000727,GO:0000785,GO:0000790,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003697,GO:0003824,GO:0003896,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006270,GO:0006271,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0022616,GO:0030466,GO:0031298,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0035861,GO:0040029,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045740,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0045937,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051338,GO:0051347,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0090734,GO:0097159,GO:0097747,GO:0140098,GO:1900262,GO:1900264,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903932,GO:1903934,GO:1904931,GO:1990837,GO:2000105,GO:2000112,GO:2000113,GO:2000278,GO:2000573,GO:2001141
Exons1
Evalue3.03e-15
EggNOG OGsKOG3056@1|root,KOG3056@2759|Eukaryota
DescriptionDNA replication origin binding
Cds size282
COG categoryT
BRITEko00000,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186951.1415687-CDS-P-wetherbeei_contig70:1197..14791683186951.1415687-CDS-P-wetherbeei_contig70:1197..1479Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig70 1198..1479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig70.1.1prot_P-wetherbeei_contig70.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig70 1198..1479 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig70.1.1

>prot_P-wetherbeei_contig70.1.1 ID=prot_P-wetherbeei_contig70.1.1|Name=mRNA_P-wetherbeei_contig70.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=94bp
DRALERLERREALVEKVKEITELKVRGSYCRTCRVTRDRGSVACHDRGHI
QNDVTATRRFFECRKCRARCTTLDARLPATCCGRCGANEWAASS
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mRNA from alignment at P-wetherbeei_contig70:1198..1479-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig70.1.1 ID=mRNA_P-wetherbeei_contig70.1.1|Name=mRNA_P-wetherbeei_contig70.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig70:1198..1479- (Phaeothamnion wetherbeei SAG_119_79)
GACCGCGCGCTCGAGCGGCTCGAGCGCCGCGAGGCGCTGGTGGAAAAGGT CAAGGAAATCACCGAGCTGAAGGTCCGGGGGTCTTACTGCCGCACCTGCC GCGTCACCCGCGACCGGGGCAGTGTGGCGTGCCACGACCGCGGGCACATC CAGAATGACGTGACGGCTACGCGGCGCTTTTTCGAGTGCCGAAAATGCCG TGCCCGCTGCACCACGCTCGACGCCCGGCTACCGGCGACGTGCTGCGGCC GCTGCGGCGCCAATGAGTGGGCGGCTTCCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig70:1198..1479-

>mRNA_P-wetherbeei_contig70.1.1 ID=mRNA_P-wetherbeei_contig70.1.1|Name=mRNA_P-wetherbeei_contig70.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig70:1198..1479- (Phaeothamnion wetherbeei SAG_119_79)
GACCGCGCGCTCGAGCGGCTCGAGCGCCGCGAGGCGCTGGTGGAAAAGGT
CAAGGAAATCACCGAGCTGAAGGTCCGGGGGTCTTACTGCCGCACCTGCC
GCGTCACCCGCGACCGGGGCAGTGTGGCGTGCCACGACCGCGGGCACATC
CAGAATGACGTGACGGCTACGCGGCGCTTTTTCGAGTGCCGAAAATGCCG
TGCCCGCTGCACCACGCTCGACGCCCGGCTACCGGCGACGTGCTGCGGCC
GCTGCGGCGCCAATGAGTGGGCGGCTTCCAGC
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