mRNA_P-wetherbeei_contig6996.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig6996.1.1
Unique Name	mRNA_P-wetherbeei_contig6996.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig6996.1.1 vs. uniprot
Match: A0A8G2JGH0_9RHOB (Uncharacterized protein YjiS (DUF1127 family) n=2 Tax=Rhodobaca TaxID=119541 RepID=A0A8G2JGH0_9RHOB)

HSP 1 Score: 59.7 bits (143), Expect = 1.350e-10
Identity = 28/53 (52.83%), Postives = 34/53 (64.15%), Query Frame = 1

Query:    4 GAIGAGLKTLFGRIKNWNERRSTFLELDGLDDRTLADIGLSRGEIEQVAAGHY 162
            G  G  L TLF  +K WN+ R T  EL+ L DR LAD+GL RG+IE VA G +
Sbjct:   17 GFQGLSLGTLFATLKTWNDERITRRELNALSDRELADVGLCRGDIENVAKGRF 69

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BLAST of mRNA_P-wetherbeei_contig6996.1.1 vs. uniprot
Match: A0A543KF36_9RHOB (Uncharacterized protein YjiS (DUF1127 family) n=2 Tax=Roseinatronobacter TaxID=121820 RepID=A0A543KF36_9RHOB)

HSP 1 Score: 56.6 bits (135), Expect = 2.230e-9
Identity = 27/51 (52.94%), Postives = 33/51 (64.71%), Query Frame = 1

Query:    4 GAIGAGLKTLFGRIKNWNERRSTFLELDGLDDRTLADIGLSRGEIEQVAAG 156
            G  G  L TLF  +K WN+ R T  EL+ L DR LAD+GLSR +I+ VA G
Sbjct:   17 GFQGLSLGTLFATLKTWNDERITRRELNALSDRELADVGLSRADIDSVARG 67

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BLAST of mRNA_P-wetherbeei_contig6996.1.1 vs. uniprot
Match: UPI00041509F2 (DUF1127 domain-containing protein n=2 Tax=Leisingera TaxID=191028 RepID=UPI00041509F2)

HSP 1 Score: 55.8 bits (133), Expect = 4.830e-9
Identity = 28/52 (53.85%), Postives = 33/52 (63.46%), Query Frame = 1

Query:    1 IGAIGAGLKTLFGRIKNWNERRSTFLELDGLDDRTLADIGLSRGEIEQVAAG 156
             G  GA + T  G    WN+ R+T   L GL DR LADIG+SRG+IE VAAG
Sbjct:   17 FGRFGALVATATGMFAAWNDARATRNALSGLTDRELADIGMSRGDIETVAAG 68

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BLAST of mRNA_P-wetherbeei_contig6996.1.1 vs. uniprot
Match: A0A497YSR1_9RHOB (Uncharacterized protein YjiS (DUF1127 family) n=1 Tax=Ruegeria conchae TaxID=981384 RepID=A0A497YSR1_9RHOB)

HSP 1 Score: 55.5 bits (132), Expect = 6.540e-9
Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 1

Query:    1 IGAIGAGLKTLFGRIKNWNERRSTFLELDGLDDRTLADIGLSRGEIEQVAAG 156
            +G IGA   T+   +  WN+ R T   L+GL DR LADIGL RG+I++VA G
Sbjct:   17 VGRIGATFATVVSTVVEWNDARVTRNALNGLTDRELADIGLCRGDIDEVAEG 68

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BLAST of mRNA_P-wetherbeei_contig6996.1.1 vs. uniprot
Match: A0A6C1T5N3_9RHOB (DUF1127 domain-containing protein n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A6C1T5N3_9RHOB)

HSP 1 Score: 53.1 bits (126), Expect = 5.230e-8
Identity = 25/53 (47.17%), Postives = 32/53 (60.38%), Query Frame = 1

Query:    4 GAIGAGLKTLFGRIKNWNERRSTFLELDGLDDRTLADIGLSRGEIEQVAAGHY 162
            G  G  L  L   +K WN+ R T  +L+ L DR LADIGL+RG+I  VA G +
Sbjct:   17 GFQGLSLGALLATLKTWNDERITRRDLNALTDRELADIGLTRGDINDVAQGRF 69

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BLAST of mRNA_P-wetherbeei_contig6996.1.1 vs. uniprot
Match: A0A238K079_9RHOB (Uncharacterized protein n=4 Tax=Ruegeria arenilitoris TaxID=1173585 RepID=A0A238K079_9RHOB)

HSP 1 Score: 52.8 bits (125), Expect = 8.160e-8
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1

Query:    1 IGAIGAGLKTLFGRIKNWNERRSTFLELDGLDDRTLADIGLSRGEIEQVAAG 156
            +G IGA L ++   +  WN+ R T   L+GL +R L DIGL RG+I++VAAG
Sbjct:   17 VGRIGAFLASVVNAVVAWNDARVTRNALNGLSNRELEDIGLCRGDIDEVAAG 68

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BLAST of mRNA_P-wetherbeei_contig6996.1.1 vs. uniprot
Match: UPI00166B0DB6 (DUF1127 domain-containing protein n=1 Tax=Tistrella bauzanensis TaxID=657419 RepID=UPI00166B0DB6)

HSP 1 Score: 52.4 bits (124), Expect = 1.010e-7
Identity = 25/44 (56.82%), Postives = 28/44 (63.64%), Query Frame = 1

Query:   22 LKTLFGRIKNWNERRSTFLELDGLDDRTLADIGLSRGEIEQVAA 153
            LK L  R   W   R T+ EL  LDDR LADIG+SRGEI  VA+
Sbjct:   11 LKNLIARTVRWRLERRTYAELKSLDDRMLADIGISRGEIRSVAS 54

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BLAST of mRNA_P-wetherbeei_contig6996.1.1 vs. uniprot
Match: Q1GE10_RUEST (Uncharacterized protein n=1 Tax=Ruegeria sp. (strain TM1040) TaxID=292414 RepID=Q1GE10_RUEST)

HSP 1 Score: 52.4 bits (124), Expect = 1.130e-7
Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 1

Query:    1 IGAIGAGLKTLFGRIKNWNERRSTFLELDGLDDRTLADIGLSRGEIEQVAA 153
            IG IGA L T   ++  WN+ R T   L  L DR LADIGL RG+I+Q+ A
Sbjct:   17 IGRIGAFLYTTSAKLMAWNDARVTRKSLSALSDRELADIGLCRGDIDQIDA 67

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BLAST of mRNA_P-wetherbeei_contig6996.1.1 vs. uniprot
Match: A0A0B4BWI4_9RHOB (Uncharacterized protein n=3 Tax=unclassified Leisingera TaxID=2614906 RepID=A0A0B4BWI4_9RHOB)

HSP 1 Score: 52.0 bits (123), Expect = 1.600e-7
Identity = 25/52 (48.08%), Postives = 31/52 (59.62%), Query Frame = 1

Query:    1 IGAIGAGLKTLFGRIKNWNERRSTFLELDGLDDRTLADIGLSRGEIEQVAAG 156
             G  GA +    G    WN+ R+T   L GL DR LADIG+SRG+I+ VA G
Sbjct:   17 FGRFGALVAAATGAFAAWNDERATRNALSGLSDRELADIGMSRGDIDHVAKG 68

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BLAST of mRNA_P-wetherbeei_contig6996.1.1 vs. uniprot
Match: UPI0008068DA9 (DUF1127 domain-containing protein n=1 Tax=Tritonibacter mobilis TaxID=379347 RepID=UPI0008068DA9)

HSP 1 Score: 52.0 bits (123), Expect = 1.600e-7
Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 1

Query:    1 IGAIGAGLKTLFGRIKNWNERRSTFLELDGLDDRTLADIGLSRGEIEQVAAG 156
            IG IGA + T   ++  WN+ R T   L  L DR LADIGL RG+I+Q+ +G
Sbjct:   17 IGRIGALVHTTSAKLMAWNDARLTRKALSALSDRELADIGLCRGDIDQINSG 68

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig6996.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig6996.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A8G2JGH0_9RHOB	1.350e-10	52.83	Uncharacterized protein YjiS (DUF1127 family) n=2 ...	[more]
A0A543KF36_9RHOB	2.230e-9	52.94	Uncharacterized protein YjiS (DUF1127 family) n=2 ...	[more]
UPI00041509F2	4.830e-9	53.85	DUF1127 domain-containing protein n=2 Tax=Leisinge...	[more]
A0A497YSR1_9RHOB	6.540e-9	50.00	Uncharacterized protein YjiS (DUF1127 family) n=1 ...	[more]
A0A6C1T5N3_9RHOB	5.230e-8	47.17	DUF1127 domain-containing protein n=1 Tax=Rhodobac...	[more]
A0A238K079_9RHOB	8.160e-8	48.08	Uncharacterized protein n=4 Tax=Ruegeria arenilito...	[more]
UPI00166B0DB6	1.010e-7	56.82	DUF1127 domain-containing protein n=1 Tax=Tistrell...	[more]
Q1GE10_RUEST	1.130e-7	50.98	Uncharacterized protein n=1 Tax=Ruegeria sp. (stra...	[more]
A0A0B4BWI4_9RHOB	1.600e-7	48.08	Uncharacterized protein n=3 Tax=unclassified Leisi...	[more]
UPI0008068DA9	1.600e-7	48.08	DUF1127 domain-containing protein n=1 Tax=Tritonib...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig6996	contig	P-wetherbeei_contig6996:2134..2295 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	999611.KI421504_gene3804
PFAMs	DUF1127
Model size	162
Max annot lvl	28211\|Alphaproteobacteria
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Evalue	7.92e-10
EggNOG OGs	COG5457@1\|root,COG5457@2\|Bacteria,1NHHX@1224\|Proteobacteria,2UJ9Y@28211\|Alphaproteobacteria,281V1@191028\|Leisingera
Description	Domain of unknown function (DUF1127)
Cds size	162
COG category	S

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186950.6069663-CDS-P-wetherbeei_contig6996:2133..2295	1683186950.6069663-CDS-P-wetherbeei_contig6996:2133..2295	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig6996 2134..2295 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig6996.1.1	prot_P-wetherbeei_contig6996.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig6996 2134..2295 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig6996:2134..2295+
coding sequence from alignment at P-wetherbeei_contig6996:2134..2295+

protein sequence of mRNA_P-wetherbeei_contig6996.1.1

>prot_P-wetherbeei_contig6996.1.1 ID=prot_P-wetherbeei_contig6996.1.1|Name=mRNA_P-wetherbeei_contig6996.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=54bp
IGAIGAGLKTLFGRIKNWNERRSTFLELDGLDDRTLADIGLSRGEIEQVA
AGHY

mRNA from alignment at P-wetherbeei_contig6996:2134..2295+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig6996.1.1 ID=mRNA_P-wetherbeei_contig6996.1.1|Name=mRNA_P-wetherbeei_contig6996.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=162bp|location=Sequence derived from alignment at P-wetherbeei_contig6996:2134..2295+ (Phaeothamnion wetherbeei SAG_119_79)
ATCGGCGCGATCGGGGCCGGACTGAAGACGCTGTTCGGCCGCATCAAGAA
CTGGAACGAGCGCCGCAGCACGTTCCTGGAACTCGACGGCCTCGACGACC
GCACCCTGGCCGACATCGGCCTGTCGCGCGGCGAGATCGAACAGGTCGCC
GCCGGCCACTAT

Coding sequence (CDS) from alignment at P-wetherbeei_contig6996:2134..2295+

>mRNA_P-wetherbeei_contig6996.1.1 ID=mRNA_P-wetherbeei_contig6996.1.1|Name=mRNA_P-wetherbeei_contig6996.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=162bp|location=Sequence derived from alignment at P-wetherbeei_contig6996:2134..2295+ (Phaeothamnion wetherbeei SAG_119_79)
ATCGGCGCGATCGGGGCCGGACTGAAGACGCTGTTCGGCCGCATCAAGAA
CTGGAACGAGCGCCGCAGCACGTTCCTGGAACTCGACGGCCTCGACGACC
GCACCCTGGCCGACATCGGCCTGTCGCGCGGCGAGATCGAACAGGTCGCC
GCCGGCCACTAT