mRNA_P-wetherbeei_contig699.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig699.2.1
Unique NamemRNA_P-wetherbeei_contig699.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig699.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig699contigP-wetherbeei_contig699:862..3276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1903
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_003990.1
Cds size1005
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186950.1243422-UTR-P-wetherbeei_contig699:861..11591683186950.1243422-UTR-P-wetherbeei_contig699:861..1159Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig699 862..1159 +
1683186950.168757-UTR-P-wetherbeei_contig699:2676..32761683186950.168757-UTR-P-wetherbeei_contig699:2676..3276Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig699 2677..3276 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186950.1353598-CDS-P-wetherbeei_contig699:1159..12681683186950.1353598-CDS-P-wetherbeei_contig699:1159..1268Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig699 1160..1268 +
1683186950.1463509-CDS-P-wetherbeei_contig699:1487..15431683186950.1463509-CDS-P-wetherbeei_contig699:1487..1543Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig699 1488..1543 +
1683186950.1569521-CDS-P-wetherbeei_contig699:1836..26761683186950.1569521-CDS-P-wetherbeei_contig699:1836..2676Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig699 1837..2676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig699.2.1prot_P-wetherbeei_contig699.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig699 1160..2676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig699.2.1

>prot_P-wetherbeei_contig699.2.1 ID=prot_P-wetherbeei_contig699.2.1|Name=mRNA_P-wetherbeei_contig699.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=335bp
MQEQLQQSRAAYDARCQQFAHSVSDECEQEVTKSVQALREEWAKTQKDIV
TVIQEGWKENRETMVLMRALHEEMTEQQRHHLEAFRADIYAAACEECEGR
AAMAAAAAADEHEEDKAGALLLAEVRHEEETRQLRETVEALRRQLAENGG
GGGGGGGAAAAAGAAGAAAAAVGGGRNNNGSGVGTSGGCGASATGGSARG
SRGRRGGDGGTGGGTASASAGGGGDGSSGGGANRGSGAAAAEVNNGSPAA
QRVAPRRTVGSPVLQRRVLHLPRRREQAAEAPQAGPAQVAAVAAESPVAQ
RQRPRNTNGVVTPEQAPAPSASSGQNGRGRGAAR*
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mRNA from alignment at P-wetherbeei_contig699:862..3276+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig699.2.1 ID=mRNA_P-wetherbeei_contig699.2.1|Name=mRNA_P-wetherbeei_contig699.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2415bp|location=Sequence derived from alignment at P-wetherbeei_contig699:862..3276+ (Phaeothamnion wetherbeei SAG_119_79)
CGCCAAGGAGGCCGAGCAGGAGAAGCGCGATGCGGTGCATTCTTAAAGGC
CGAGGATTCGCTTTGGGTTTCTTTAGCATGTTTTAGGTACCGTTCTCCGA
ATCTGAAGTCTGTGGGCGTAGTTGGTCGTTGTTTGCACTGTTGCTTCTTC
CTCGGGTACCTTCGAAAACCACTCACTTCATTTTTTGCTCCGTTCATTGT
ATGGGCCGCGCCGCCCCGCGTTCCGCCAACTCCATCTCCCACAGGCGGTG
GCGCTGCAGCACCAGTTCGACCGGCGCACTGAAGGGCTGCAACAGGAGAT
GCAGGAGCAGCTGCAGCAGTCGCGGGCAGCGTACGACGCCCGCTGCCAGC
AATTCGCGCACTCCGTTTCGGACGAGTGCGAGCAGGAGGTCACCAAGAGC
GTCCAGGGTCAGTTGACTACTTGATTCAGCCCGCCAGCGGCGGGGGGAAG
GAGCAGAGGGAACAGTTTGAGCGGGAGGTGAGGTGCGTCAATCGTGGCTG
CTGTTGCGGCCGCCGGCGCCGCCGCCAGAATTGCTGTGAAGGATAGGGTA
TGCCAACGTTTCAGAATTGCATGTTTTGAGGCCAACGACTAACACTTAAC
TCTCCTTATCTGACCCCGATTTCCAGCACTACGGGAAGAGTGGGCGAAGA
CGCAGAAGGACATCGTTACCGTGATTCAAGAGGTGAGCGAGGAAGAGAGA
GGGAAGAGCAAGCCGCTGCTGCCTTGCCTGGTGCTGTTCCTTGGTGGCTC
GCTGTGCCACTACCGCAGACCATCAGCCGCATCGCTGTTCTTGCACAGCC
ACTGCCGCTGGTGCCACCGTCGCCACTCCGCTGCTGCTGTCATGACGGCC
GCTGCCGCTGCCCATTCCCACCGAGGGGTTGCCCTTGCTGCCTTCTTCCT
TTACTTTCTTAAGCTTACTTCCCCTGCTGTCATCTCTGCCTACTCTGCGA
ACCCTCCACACAAAAACATTCACAGGGCTGGAAAGAGAACCGCGAGACCA
TGGTGCTGATGCGCGCGCTGCACGAGGAGATGACGGAGCAGCAGCGCCAT
CACCTCGAGGCCTTCCGCGCCGACATCTACGCCGCCGCGTGCGAGGAATG
CGAGGGACGGGCTGCGATGGCGGCGGCCGCCGCAGCGGACGAGCACGAAG
AGGACAAGGCGGGGGCTCTGCTACTCGCGGAGGTGCGCCACGAGGAGGAG
ACACGCCAGCTGCGAGAGACAGTCGAGGCGCTACGTCGCCAGCTCGCCGA
GAACGGTGGCGGCGGCGGTGGCGGTGGCGGCGCTGCCGCTGCTGCCGGTG
CTGCCGGCGCTGCAGCCGCCGCCGTCGGCGGCGGCAGAAACAACAACGGT
TCGGGCGTCGGCACCAGCGGTGGTTGCGGCGCAAGTGCCACCGGTGGTAG
TGCTCGTGGAAGCCGCGGCCGCCGCGGCGGTGATGGTGGCACCGGCGGAG
GTACTGCCAGCGCCAGTGCCGGTGGCGGCGGCGACGGCAGCAGTGGCGGC
GGAGCGAATCGTGGCTCTGGAGCTGCGGCGGCGGAGGTAAACAATGGCTC
TCCTGCCGCACAACGTGTTGCTCCTCGCCGGACCGTCGGCAGCCCGGTAC
TGCAGCGCCGCGTGCTCCACTTGCCGCGCCGCAGGGAACAGGCTGCGGAA
GCGCCGCAGGCGGGGCCGGCGCAAGTGGCGGCAGTGGCAGCCGAGTCGCC
GGTGGCGCAGCGGCAGCGGCCGCGGAACACCAACGGCGTCGTGACCCCCG
AGCAGGCCCCGGCTCCTTCGGCATCCAGCGGCCAGAACGGCCGCGGCCGC
GGCGCGGCTCGCTGAACCCGCCTGCCAAGGCAAGCGGCATCCTGGATCCA
AAGTATGGACGCAACAGGGCTTTTTGTGAAGTCTTTTGAAAGGCGAGCTT
CGGGGGGCTGCAGTCGGAAAAAGACGCTCTCGGCAAAGGAGCGATACTGC
TGGGGGGAAGAGGCGGCGCAACGGGAAATATGCCCGAGCGCCACAACGCG
CGGCGGCAGCTATACAGGGAGGCATGCTCAGAGGGACCTTTTCTTTTGGG
ATTGGGAGAGCAATTATCGCCGCGCGGCGGCTCCGGCATATAGCGACAAC
GGCTCGACTATGGCGACCCAATGGAGATACCAGCACCATAGGCGTTATGC
CGCGCTCCGGCATTGTCGTCGGGATCGTACAGCGTCAGACGAAATCCATC
AGGAGGCGCAAGGATACTGAGGTACCGATGCCGCCACCGGTGCCGCCGAA
ATGCATAGCCCGCGGGCATCGAAGTGGGTATAGAAACGGGCGTAGGAAAA
AACGGTGGCCTCGGCTCCAATACCCATCAGAGGTTCGCCTGCCAATGCCG
CGTGCAAGCACATGCCAAACTCGTTATACGTTTACACAGCCTTACTGAAG
CACACGTGATCCCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig699:862..3276+

>mRNA_P-wetherbeei_contig699.2.1 ID=mRNA_P-wetherbeei_contig699.2.1|Name=mRNA_P-wetherbeei_contig699.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1005bp|location=Sequence derived from alignment at P-wetherbeei_contig699:862..3276+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGAGCAGCTGCAGCAGTCGCGGGCAGCGTACGACGCCCGCTGCCA
GCAATTCGCGCACTCCGTTTCGGACGAGTGCGAGCAGGAGGTCACCAAGA
GCGTCCAGGCACTACGGGAAGAGTGGGCGAAGACGCAGAAGGACATCGTT
ACCGTGATTCAAGAGGGCTGGAAAGAGAACCGCGAGACCATGGTGCTGAT
GCGCGCGCTGCACGAGGAGATGACGGAGCAGCAGCGCCATCACCTCGAGG
CCTTCCGCGCCGACATCTACGCCGCCGCGTGCGAGGAATGCGAGGGACGG
GCTGCGATGGCGGCGGCCGCCGCAGCGGACGAGCACGAAGAGGACAAGGC
GGGGGCTCTGCTACTCGCGGAGGTGCGCCACGAGGAGGAGACACGCCAGC
TGCGAGAGACAGTCGAGGCGCTACGTCGCCAGCTCGCCGAGAACGGTGGC
GGCGGCGGTGGCGGTGGCGGCGCTGCCGCTGCTGCCGGTGCTGCCGGCGC
TGCAGCCGCCGCCGTCGGCGGCGGCAGAAACAACAACGGTTCGGGCGTCG
GCACCAGCGGTGGTTGCGGCGCAAGTGCCACCGGTGGTAGTGCTCGTGGA
AGCCGCGGCCGCCGCGGCGGTGATGGTGGCACCGGCGGAGGTACTGCCAG
CGCCAGTGCCGGTGGCGGCGGCGACGGCAGCAGTGGCGGCGGAGCGAATC
GTGGCTCTGGAGCTGCGGCGGCGGAGGTAAACAATGGCTCTCCTGCCGCA
CAACGTGTTGCTCCTCGCCGGACCGTCGGCAGCCCGGTACTGCAGCGCCG
CGTGCTCCACTTGCCGCGCCGCAGGGAACAGGCTGCGGAAGCGCCGCAGG
CGGGGCCGGCGCAAGTGGCGGCAGTGGCAGCCGAGTCGCCGGTGGCGCAG
CGGCAGCGGCCGCGGAACACCAACGGCGTCGTGACCCCCGAGCAGGCCCC
GGCTCCTTCGGCATCCAGCGGCCAGAACGGCCGCGGCCGCGGCGCGGCTC
GCTGA
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