mRNA_P-wetherbeei_contig6989.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6989.1.1
Unique NamemRNA_P-wetherbeei_contig6989.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6989.1.1 vs. uniprot
Match: D8LR43_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LR43_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.590e-12
Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:  295 TCCTTDIDCEAKTTPSQQEYMNTYDKSVICVPECEGL-GCDMFGLCQDCRACFNTCEGAAYYLQVLPGTPGSAIVFCPDSGLAD 543
            +CC+ D DC    +P+  E+ + + K+V C  +C GL  C+MFG+C+ CR CF TCEGA  +++   G+P   I FC   G+AD
Sbjct:   26 SCCSQDSDCTELLSPADIEHNSIFSKTVECDQDCPGLINCNMFGICEQCRGCFETCEGAMLFMEKT-GSPAEYITFCSGIGIAD 108
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6989.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LR43_ECTSI1.590e-1241.67Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6989contigP-wetherbeei_contig6989:2..1643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1173
Hectar predicted targeting categorysignal peptide
Exons3
Cds size927
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186950.0517514-UTR-P-wetherbeei_contig6989:1..2201683186950.0517514-UTR-P-wetherbeei_contig6989:1..220Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6989 2..220 +
1683186950.0933764-UTR-P-wetherbeei_contig6989:1616..16431683186950.0933764-UTR-P-wetherbeei_contig6989:1616..1643Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6989 1617..1643 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186950.063424-CDS-P-wetherbeei_contig6989:220..3491683186950.063424-CDS-P-wetherbeei_contig6989:220..349Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6989 221..349 +
1683186950.0736942-CDS-P-wetherbeei_contig6989:575..6591683186950.0736942-CDS-P-wetherbeei_contig6989:575..659Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6989 576..659 +
1683186950.0830655-CDS-P-wetherbeei_contig6989:902..16161683186950.0830655-CDS-P-wetherbeei_contig6989:902..1616Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6989 903..1616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6989.1.1prot_P-wetherbeei_contig6989.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6989 221..1616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6989.1.1

>prot_P-wetherbeei_contig6989.1.1 ID=prot_P-wetherbeei_contig6989.1.1|Name=mRNA_P-wetherbeei_contig6989.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=309bp
MRLSFAIARAAIVLAAAVHIAADDMTCCTTDIDCEAKTTPSQQEYMNTYD
KSVICVPECEGLGCDMFGLCQDCRACFNTCEGAAYYLQVLPGTPGSAIVF
CPDSGLADYDLNCSAVPTPSPASETAAPTASPIHYTPSPSELAFTGAPTA
APLYTFAPTAVPSAAGAALAYASAPMPFAETMPFFGGGASDGGDYGGNVE
MCASNADCGAQINAGSREWFCSSGYSLLCDAAACSESRGKNGRALWCNSS
MFDYPGCRVCAFSCSGKGDDECVLCPSTASDFCAGDAGADAAREPTRTRR
ATASEKYS*
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mRNA from alignment at P-wetherbeei_contig6989:2..1643+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6989.1.1 ID=mRNA_P-wetherbeei_contig6989.1.1|Name=mRNA_P-wetherbeei_contig6989.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1642bp|location=Sequence derived from alignment at P-wetherbeei_contig6989:2..1643+ (Phaeothamnion wetherbeei SAG_119_79)
AACCTCCTCGGGGTGTCGTTGGCAGACGTTTGCTGCCAGTGAAAGCCGCG
CGGCGCATCGTCCCGCCTACGCTGAAGCATGCGACTGTTGCCGATGGCAG
TTATGGCAGGCAGATCACCCGAAGATCTTTTGCCGAAGTTCTAAAAGCCA
AGACACAAAACATCACCACCTCGAGCTCTTTCCCCAAGCCGCGCAAAGCA
ACAAGGGCAGCAAGTGAACATGAGGCTTTCTTTTGCAATCGCACGAGCAG
CGATTGTTCTGGCGGCAGCTGTGCACATCGCTGCCGACGACATGACTTGT
TGCACGACGGACATTGACTGCGAGGCCAAGACAACGCCGTCACAGCAGGC
AAGGACGAACGTCCTAGGCAGGGAAGCAGCAGAGCCATGGAAAAGCCCTT
TCCGTCGCGCTCGCCTGTGTCATGCTATCTTCACCCTCCGTGCGCTTGGC
AACACGCAGGTCTACCTCTATCTCATTACCGTCGTGCTTCCATTTCCTTT
TCTTTCCTTTCTTCTGCTTAAAATGCCTCATTTTCTCCACGTTTTTGACT
TGCTTGTTTCCTATGCTTGGGCAGGAGTATATGAACACGTACGACAAGTC
CGTCATCTGCGTGCCGGAGTGCGAGGGCCTCGGCTGCGATATGTTCGGCC
TGTGCCAGGCGAGCCATTCATGACAAGAACGCGGATCGATGTTATCGGGT
GGCAGAGTCCTTACGAATGATCGGTCCATTGCGGCTCTAACGTTATTTTG
TGCGTTATTCCGCATTTTATCGAGGAAATCGACGCCCCATGCTGCGAGAA
AGGATGCTTCAGTCTGCATGTCGATGAAGAAGGCCGAGCCTTAATCATTA
CAGGCCTTTCTCTCTACTTTTGGCCTTCCCCGGACACTTCACCGAATGCA
GGACTGCCGCGCCTGCTTCAACACGTGCGAGGGCGCCGCCTACTACCTAC
AGGTACTCCCGGGCACGCCCGGCAGCGCCATTGTGTTCTGCCCCGACAGC
GGCCTTGCTGACTACGACCTCAACTGTTCCGCCGTGCCGACGCCGTCGCC
TGCTTCCGAGACGGCGGCTCCGACCGCCTCTCCTATCCACTACACGCCAT
CGCCGTCTGAATTGGCCTTTACGGGAGCGCCCACCGCGGCGCCGCTTTAC
ACATTCGCGCCGACGGCGGTGCCGTCGGCCGCCGGGGCTGCCCTGGCTTA
CGCCTCGGCCCCAATGCCGTTCGCTGAGACTATGCCGTTTTTCGGCGGCG
GCGCCAGTGACGGCGGCGATTACGGCGGTAATGTTGAGATGTGCGCTTCG
AACGCGGACTGTGGGGCGCAGATCAACGCCGGCAGCCGCGAGTGGTTCTG
CAGCTCGGGCTACTCGCTGCTTTGCGACGCCGCCGCCTGCTCCGAAAGCC
GCGGCAAAAATGGCCGCGCTCTCTGGTGTAACAGCTCGATGTTTGACTAC
CCAGGCTGCCGCGTCTGCGCCTTCTCCTGCAGCGGAAAGGGCGACGATGA
ATGTGTGCTGTGCCCATCAACAGCGTCCGACTTCTGCGCCGGCGACGCCG
GCGCGGATGCGGCGCGGGAGCCGACGCGAACACGCCGCGCCACTGCCTCC
GAGAAGTATTCTTAGAAGGCGGGCTTTGGCATGTGATGGTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6989:2..1643+

>mRNA_P-wetherbeei_contig6989.1.1 ID=mRNA_P-wetherbeei_contig6989.1.1|Name=mRNA_P-wetherbeei_contig6989.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=927bp|location=Sequence derived from alignment at P-wetherbeei_contig6989:2..1643+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGCTTTCTTTTGCAATCGCACGAGCAGCGATTGTTCTGGCGGCAGC
TGTGCACATCGCTGCCGACGACATGACTTGTTGCACGACGGACATTGACT
GCGAGGCCAAGACAACGCCGTCACAGCAGGAGTATATGAACACGTACGAC
AAGTCCGTCATCTGCGTGCCGGAGTGCGAGGGCCTCGGCTGCGATATGTT
CGGCCTGTGCCAGGACTGCCGCGCCTGCTTCAACACGTGCGAGGGCGCCG
CCTACTACCTACAGGTACTCCCGGGCACGCCCGGCAGCGCCATTGTGTTC
TGCCCCGACAGCGGCCTTGCTGACTACGACCTCAACTGTTCCGCCGTGCC
GACGCCGTCGCCTGCTTCCGAGACGGCGGCTCCGACCGCCTCTCCTATCC
ACTACACGCCATCGCCGTCTGAATTGGCCTTTACGGGAGCGCCCACCGCG
GCGCCGCTTTACACATTCGCGCCGACGGCGGTGCCGTCGGCCGCCGGGGC
TGCCCTGGCTTACGCCTCGGCCCCAATGCCGTTCGCTGAGACTATGCCGT
TTTTCGGCGGCGGCGCCAGTGACGGCGGCGATTACGGCGGTAATGTTGAG
ATGTGCGCTTCGAACGCGGACTGTGGGGCGCAGATCAACGCCGGCAGCCG
CGAGTGGTTCTGCAGCTCGGGCTACTCGCTGCTTTGCGACGCCGCCGCCT
GCTCCGAAAGCCGCGGCAAAAATGGCCGCGCTCTCTGGTGTAACAGCTCG
ATGTTTGACTACCCAGGCTGCCGCGTCTGCGCCTTCTCCTGCAGCGGAAA
GGGCGACGATGAATGTGTGCTGTGCCCATCAACAGCGTCCGACTTCTGCG
CCGGCGACGCCGGCGCGGATGCGGCGCGGGAGCCGACGCGAACACGCCGC
GCCACTGCCTCCGAGAAGTATTCTTAG
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