mRNA_P-wetherbeei_contig6987.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6987.2.1
Unique NamemRNA_P-wetherbeei_contig6987.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6987.2.1 vs. uniprot
Match: A0A6H5JZ73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ73_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 4.260e-7
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 HYAPSFGFVCGSLGIDGATAARMFVFLNARDMLSAANR 114
            H+AP+FG VCG+LGI+   AAR F+FL ARD+LSAA R
Sbjct:  210 HHAPAFGVVCGALGIEENEAARAFMFLVARDVLSAATR 247
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BLAST of mRNA_P-wetherbeei_contig6987.2.1 vs. uniprot
Match: D7FXQ5_ECTSI (Urease accessory protein UreF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXQ5_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.280e-6
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 HYAPSFGFVCGSLGIDGATAARMFVFLNARDMLSAANR 114
            H++P+FG VCG+LGI+   AAR F+FL ARD+LSAA R
Sbjct:  196 HHSPAFGVVCGALGIEEDEAARAFMFLVARDVLSAATR 233
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BLAST of mRNA_P-wetherbeei_contig6987.2.1 vs. uniprot
Match: A0A7N0VJ18_KALFE (Uncharacterized protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0VJ18_KALFE)

HSP 1 Score: 48.9 bits (115), Expect = 1.500e-5
Identity = 20/38 (52.63%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 HYAPSFGFVCGSLGIDGATAARMFVFLNARDMLSAANR 114
            H+AP+FG VCG LG++ AT+ R ++F+  RD++SAA R
Sbjct:  173 HHAPTFGLVCGVLGMNSATSQRGYMFITMRDIISAATR 210
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6987.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JZ73_9PHAE4.260e-765.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXQ5_ECTSI1.280e-663.16Urease accessory protein UreF n=1 Tax=Ectocarpus s... [more]
A0A7N0VJ18_KALFE1.500e-552.63Uncharacterized protein n=1 Tax=Kalanchoe fedtsche... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6987contigP-wetherbeei_contig6987:3115..3231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FXQ5
Preferred nameUREF
PFAMsUreF
Model size117
Max annot lvl2759|Eukaryota
KEGG koko:K03188,ko:K16453
Hectar predicted targeting categorysignal peptide
GOsGO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019627,GO:0034641,GO:0043085,GO:0043603,GO:0044093,GO:0044237,GO:0044281,GO:0050790,GO:0051336,GO:0051345,GO:0065007,GO:0065009,GO:0071704,GO:0071941,GO:1901564,GO:1905181,GO:1905182
Exons1
Evalue2.11e-07
EggNOG OGsCOG0830@1|root,2REVQ@2759|Eukaryota
Descriptionnickel cation binding
Cds size117
COG categoryO
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186950.0223572-CDS-P-wetherbeei_contig6987:3114..32311683186950.0223572-CDS-P-wetherbeei_contig6987:3114..3231Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6987 3115..3231 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6987.2.1prot_P-wetherbeei_contig6987.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6987 3115..3231 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6987.2.1

>prot_P-wetherbeei_contig6987.2.1 ID=prot_P-wetherbeei_contig6987.2.1|Name=mRNA_P-wetherbeei_contig6987.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=39bp
HYAPSFGFVCGSLGIDGATAARMFVFLNARDMLSAANR*
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mRNA from alignment at P-wetherbeei_contig6987:3115..3231-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6987.2.1 ID=mRNA_P-wetherbeei_contig6987.2.1|Name=mRNA_P-wetherbeei_contig6987.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=117bp|location=Sequence derived from alignment at P-wetherbeei_contig6987:3115..3231- (Phaeothamnion wetherbeei SAG_119_79)
CACTACGCCCCAAGCTTCGGGTTCGTGTGCGGATCGCTGGGGATCGATGG
CGCGACGGCGGCGCGCATGTTTGTCTTTCTCAATGCCCGGGATATGCTCT
CCGCCGCCAACCGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6987:3115..3231-

>mRNA_P-wetherbeei_contig6987.2.1 ID=mRNA_P-wetherbeei_contig6987.2.1|Name=mRNA_P-wetherbeei_contig6987.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=117bp|location=Sequence derived from alignment at P-wetherbeei_contig6987:3115..3231- (Phaeothamnion wetherbeei SAG_119_79)
CACTACGCCCCAAGCTTCGGGTTCGTGTGCGGATCGCTGGGGATCGATGG
CGCGACGGCGGCGCGCATGTTTGTCTTTCTCAATGCCCGGGATATGCTCT
CCGCCGCCAACCGGTGA
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