mRNA_P-wetherbeei_contig6985.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6985.3.1
Unique NamemRNA_P-wetherbeei_contig6985.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6985.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6985contigP-wetherbeei_contig6985:1999..3108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1506583.JQJY01000010_gene1187
PFAMsCHU_C,Laminin_G_3,SprB
Model size1110
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.17e-05
EggNOG OGsCOG2911@1|root,COG3209@1|root,COG4677@1|root,COG5492@1|root,COG2911@2|Bacteria,COG3209@2|Bacteria,COG4677@2|Bacteria,COG5492@2|Bacteria,4PKBQ@976|Bacteroidetes,1IJ6N@117743|Flavobacteriia,2NSCF@237|Flavobacterium
DescriptionSprB repeat
Cds size1110
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186949.8352067-CDS-P-wetherbeei_contig6985:1998..31081683186949.8352067-CDS-P-wetherbeei_contig6985:1998..3108Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6985 1999..3108 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6985.3.1prot_P-wetherbeei_contig6985.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6985 1999..3108 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6985.3.1

>prot_P-wetherbeei_contig6985.3.1 ID=prot_P-wetherbeei_contig6985.3.1|Name=mRNA_P-wetherbeei_contig6985.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=370bp
STTATETTIVGTASTWYYFTIAVTSAGAVTFYINGSSAGTGTVTQATASA
PFYIGRLNNVTTSRFNGYMSDFRVYDAILSSGTISTMYTRGPNDFTMTVA
GSSTDETSTGSDGTITVTVTNYSGSYTLVWSDGSSTSASRTGLTSGSYTV
TATSTLGGTRSATFTISYTGIHGYIARYKFNDSTLLSTDTTGSFGLTATG
TPTTGTDATYGTVLSLDGTNYYTVSTPISEVIGDVARTICYWGKANDTTQ
RVAFSYGTSGSGTQCQLTHSGNGGYVTVSNGSVVASGGSATTSWRFVATT
YTGGSAGTTTVYLNNSLFTSTTAIFTATSSTNALRIGSSAVGSILTFNGN
MVDFRVYSKVLSTSSLSSMY
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mRNA from alignment at P-wetherbeei_contig6985:1999..3108-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6985.3.1 ID=mRNA_P-wetherbeei_contig6985.3.1|Name=mRNA_P-wetherbeei_contig6985.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1110bp|location=Sequence derived from alignment at P-wetherbeei_contig6985:1999..3108- (Phaeothamnion wetherbeei SAG_119_79)
AGCACAACTGCTACCGAGACAACAATTGTCGGTACTGCATCAACTTGGTA
TTATTTTACAATTGCAGTTACATCAGCAGGTGCCGTCACGTTCTATATAA
ATGGCTCCAGTGCGGGGACCGGTACTGTAACACAAGCCACTGCCAGTGCG
CCTTTTTACATTGGAAGATTGAACAACGTAACAACAAGCAGATTCAACGG
GTACATGTCTGACTTCCGAGTGTACGATGCCATATTGAGCTCCGGAACGA
TCTCAACAATGTATACGCGTGGGCCTAATGACTTTACAATGACCGTAGCA
GGTTCAAGCACGGACGAGACCTCTACAGGATCCGACGGAACTATAACAGT
CACCGTTACAAATTATTCTGGTTCGTACACGCTAGTGTGGAGCGACGGGT
CATCCACAAGTGCCTCGCGCACCGGCTTGACTTCGGGATCATACACGGTC
ACGGCAACATCTACCCTTGGTGGAACCAGATCGGCAACATTCACAATTTC
ATACACAGGCATTCACGGATATATCGCACGCTACAAGTTTAATGACTCAA
CGTTGCTGTCGACGGACACCACGGGATCATTTGGACTCACGGCAACAGGC
ACTCCAACCACGGGAACGGATGCAACTTATGGAACCGTTCTGAGTCTTGA
TGGGACAAACTATTATACCGTCTCAACACCAATTTCGGAAGTCATAGGCG
ATGTCGCACGGACCATTTGCTACTGGGGGAAAGCAAATGACACAACGCAG
CGCGTTGCATTCAGCTATGGAACATCCGGTAGCGGCACGCAATGTCAGCT
CACCCATTCGGGTAACGGTGGATACGTGACAGTATCCAATGGGTCTGTTG
TTGCATCAGGAGGGAGCGCAACAACGTCCTGGAGATTTGTTGCCACTACA
TATACAGGCGGCAGTGCAGGCACAACGACTGTCTACTTGAACAATTCCCT
GTTTACAAGCACCACTGCCATCTTCACTGCAACCAGTTCTACAAATGCAC
TCCGCATCGGTAGTTCTGCCGTGGGATCTATATTAACCTTCAACGGCAAC
ATGGTGGACTTCCGAGTGTATTCCAAAGTACTTTCGACTTCGTCTCTGTC
GTCCATGTAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6985:1999..3108-

>mRNA_P-wetherbeei_contig6985.3.1 ID=mRNA_P-wetherbeei_contig6985.3.1|Name=mRNA_P-wetherbeei_contig6985.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1110bp|location=Sequence derived from alignment at P-wetherbeei_contig6985:1999..3108- (Phaeothamnion wetherbeei SAG_119_79)
AGCACAACTGCTACCGAGACAACAATTGTCGGTACTGCATCAACTTGGTA
TTATTTTACAATTGCAGTTACATCAGCAGGTGCCGTCACGTTCTATATAA
ATGGCTCCAGTGCGGGGACCGGTACTGTAACACAAGCCACTGCCAGTGCG
CCTTTTTACATTGGAAGATTGAACAACGTAACAACAAGCAGATTCAACGG
GTACATGTCTGACTTCCGAGTGTACGATGCCATATTGAGCTCCGGAACGA
TCTCAACAATGTATACGCGTGGGCCTAATGACTTTACAATGACCGTAGCA
GGTTCAAGCACGGACGAGACCTCTACAGGATCCGACGGAACTATAACAGT
CACCGTTACAAATTATTCTGGTTCGTACACGCTAGTGTGGAGCGACGGGT
CATCCACAAGTGCCTCGCGCACCGGCTTGACTTCGGGATCATACACGGTC
ACGGCAACATCTACCCTTGGTGGAACCAGATCGGCAACATTCACAATTTC
ATACACAGGCATTCACGGATATATCGCACGCTACAAGTTTAATGACTCAA
CGTTGCTGTCGACGGACACCACGGGATCATTTGGACTCACGGCAACAGGC
ACTCCAACCACGGGAACGGATGCAACTTATGGAACCGTTCTGAGTCTTGA
TGGGACAAACTATTATACCGTCTCAACACCAATTTCGGAAGTCATAGGCG
ATGTCGCACGGACCATTTGCTACTGGGGGAAAGCAAATGACACAACGCAG
CGCGTTGCATTCAGCTATGGAACATCCGGTAGCGGCACGCAATGTCAGCT
CACCCATTCGGGTAACGGTGGATACGTGACAGTATCCAATGGGTCTGTTG
TTGCATCAGGAGGGAGCGCAACAACGTCCTGGAGATTTGTTGCCACTACA
TATACAGGCGGCAGTGCAGGCACAACGACTGTCTACTTGAACAATTCCCT
GTTTACAAGCACCACTGCCATCTTCACTGCAACCAGTTCTACAAATGCAC
TCCGCATCGGTAGTTCTGCCGTGGGATCTATATTAACCTTCAACGGCAAC
ATGGTGGACTTCCGAGTGTATTCCAAAGTACTTTCGACTTCGTCTCTGTC
GTCCATGTAT
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