mRNA_P-wetherbeei_contig6974.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6974.1.1
Unique NamemRNA_P-wetherbeei_contig6974.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6974.1.1 vs. uniprot
Match: D7G6U0_ECTSI (REJ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U0_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.080e-24
Identity = 66/160 (41.25%), Postives = 82/160 (51.25%), Query Frame = 1
Query:    4 RADCSED--TSAGLCGRCLSGYSGATMFANTPCVSTAANLTLCADRVRNGNETDVDCGGGSCSQVCATGQNCAAASDCEFGACVGG-------ICGVAVKICSEDCGG--RGNCTYID-TAGTALAATACTVDR--LLCFALCSCNDGYYGEACQYTAAE 441
            R DC  D       CG C+SG++G     N+ CV T A    C+D  +NG+ETDVDCGG SCS  C +G  C   +DC +  C          IC    K C  DCGG  RG C Y+  T+G  L A  C  D     C A C+C DGY G+ CQY+ +E
Sbjct:  826 RDDCGTDGLREDNTCGECVSGFTGVVGPHNSLCVDTTALDATCSDGEKNGDETDVDCGGSSCSP-CPSGSTCLVDTDCSYNNCPAPASTTSDPICVSPAKACPNDCGGTIRGTCEYVSSTSGAVLTAADCLADTPTSTCRASCNCFDGYGGDGCQYSDSE 984          
BLAST of mRNA_P-wetherbeei_contig6974.1.1 vs. uniprot
Match: A0A6H5JDC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC0_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.470e-24
Identity = 67/160 (41.88%), Postives = 82/160 (51.25%), Query Frame = 1
Query:    4 RADCSED--TSAGLCGRCLSGYSGATMFANTPCVSTAANLTLCADRVRNGNETDVDCGGGSCSQVCATGQNCAAASDCEFGACV-------GGICGVAVKICSEDCGG--RGNCTYID-TAGTALAATACTVDR--LLCFALCSCNDGYYGEACQYTAAE 441
            R DC  D       CG C+SG+ G     N+ CV T A    C+D  +NG+ETDVDCGG SCS  C +G  C   +DC +  C          IC    K C  DCGG  RG C Y+  T+G AL A  C  D     C A C+C DGY G+ CQY+ +E
Sbjct:  927 RDDCGTDGLREENTCGECVSGFVGVVGPHNSLCVDTTAFDASCSDGEKNGDETDVDCGGPSCSP-CPSGSTCLVGTDCSYNNCPEPASTTSDPICVPPAKACPNDCGGTVRGTCEYVSSTSGAALNAADCLADTPTSTCRATCNCFDGYGGDGCQYSDSE 1085          
BLAST of mRNA_P-wetherbeei_contig6974.1.1 vs. uniprot
Match: A0A2M8B869_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium CG_4_9_14_3_um_filter_63_12 TaxID=1973967 RepID=A0A2M8B869_9DELT)

HSP 1 Score: 60.1 bits (144), Expect = 1.420e-8
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 1
Query:  103 TAANLTL-CADRVRNGNETDVDCGGGSCSQVCATGQNCAAASDCEFGACVGGICGVA 270
            T  ++T+ CAD V+NG+ETDVDCGG SC  VCA G  CAAA+DC  G C  G+C  A
Sbjct:   75 TEGDVTISCADGVKNGDETDVDCGG-SCG-VCAEGSACAAATDCASGYCGDGVCAAA 129          
BLAST of mRNA_P-wetherbeei_contig6974.1.1 vs. uniprot
Match: A0A7J7QGK1_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QGK1_9CHLO)

HSP 1 Score: 61.2 bits (147), Expect = 4.000e-8
Identity = 28/59 (47.46%), Postives = 36/59 (61.02%), Query Frame = 1
Query:   85 NTPCVSTAANLTLCADRVRNGNETDVDCGGGSCSQVCATGQNCAAASDCEFGACVGGIC 261
            N  CV  A     C++ V++G ETD+DCGGG C  +C+ GQ C  A DC  G C GG+C
Sbjct:  121 NGVCVEAAT----CSNGVKDGRETDLDCGGGGCQALCSRGQGCVEARDCITGVCSGGVC 175          
BLAST of mRNA_P-wetherbeei_contig6974.1.1 vs. uniprot
Match: A9FKQ2_SORC5 (Putative secreted protein n=1 Tax=Sorangium cellulosum (strain So ce56) TaxID=448385 RepID=A9FKQ2_SORC5)

HSP 1 Score: 60.5 bits (145), Expect = 7.890e-8
Identity = 38/93 (40.86%), Postives = 44/93 (47.31%), Query Frame = 1
Query:    1 GRADCSEDTSAGLCGRCLSGYSGATMFANTPCVSTAANLTLCADRVRNGNETDVDCGGGS------CSQVCATGQNCAAASDCEFGACVGGIC 261
            G A C++D    L   C+SGY        TP          C D  +NGNETDVDCGG S      C++ C  GQ C  A DC  G C GG C
Sbjct:  281 GCAPCADDLECALDSDCVSGYCNTAGRCATP---------SCMDTDKNGNETDVDCGGASFQGAPACNR-CGVGQTCGVADDCTTGFCSGGTC 363          
BLAST of mRNA_P-wetherbeei_contig6974.1.1 vs. uniprot
Match: A0A7Y6PQR5_9DELT (Uncharacterized protein n=1 Tax=Kofleriaceae bacterium TaxID=2212474 RepID=A0A7Y6PQR5_9DELT)

HSP 1 Score: 60.1 bits (144), Expect = 9.710e-8
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 1
Query:  103 TAANLTLCADRVRNGNETDVDCGGGSCSQVCATGQNCAAASDCEFGACVGGICG 264
            T A    C DRVR+G+ET VDCGG +C + CA GQ C+A +DCE G C  G+CG
Sbjct:  270 TPAPRASCFDRVRDGSETGVDCGG-TC-RTCAAGQTCSAPTDCESGVCESGVCG 321          
BLAST of mRNA_P-wetherbeei_contig6974.1.1 vs. uniprot
Match: A0A842QMK4_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Woesearchaeota archaeon TaxID=2026803 RepID=A0A842QMK4_9ARCH)

HSP 1 Score: 59.7 bits (143), Expect = 1.650e-7
Identity = 38/86 (44.19%), Postives = 42/86 (48.84%), Query Frame = 1
Query:   22 DTSAGLCGRCLSGYSGATMFANTPCVSTAAN------LTLCADRVRNGNETDVDCGGGSCSQVCATGQNCAAASDCEFGACVGGIC 261
            D S G  G C  G S      N+ C+S   N         C D V+NGNETDVDCGGG C      G +C   SDC  GAC  GIC
Sbjct: 1311 DLSCGEDGSCRIGES---CSKNSNCLSGYCNEDGVCDYASCDDDVKNGNETDVDCGGGECDPCPDIGDSCGDDSDCASGACRNGIC 1393          
BLAST of mRNA_P-wetherbeei_contig6974.1.1 vs. uniprot
Match: A0A814V2I1_9BILA (Hypothetical protein n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A814V2I1_9BILA)

HSP 1 Score: 59.3 bits (142), Expect = 1.910e-7
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 1
Query:  115 LTLCADRVRNGNETDVDCGGGSCSQVCATGQNCAAASDCEFGACVGGIC 261
            +T C+D ++N +ETD+DCGG SCS+ C+T Q C   SDC   +C+ GIC
Sbjct:   97 ITTCSDGIQNQDETDIDCGGLSCSRRCSTNQKCQVVSDCNKTSCMCGIC 145          
BLAST of mRNA_P-wetherbeei_contig6974.1.1 vs. uniprot
Match: A0A815WBS6_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A815WBS6_ADIRI)

HSP 1 Score: 59.3 bits (142), Expect = 2.110e-7
Identity = 37/110 (33.64%), Postives = 49/110 (44.55%), Query Frame = 1
Query:   88 TPCVSTAANLTLCADRVRNGNETDVDCGGGSC---SQVCATGQNCAAASDCEFGACVGGICGVAVKICSEDCGGRGNCTYIDTAGTALAATACTVDRLLCFALCSCNDGY 408
            T C+        C D ++NG ETD DCGG +C    ++C +GQNC   +DC  G C  G+C      C++     G  T  D  G      AC  D   C A   C  G+
Sbjct:  210 TLCLFDDVIAPTCTDGIKNGKETDQDCGGKTCILQGKICGSGQNCINGTDCTSGVCTRGVC--QAPKCNDGVQNGGE-TGRDCGGPCAPTKACD-DGSACVAATDCKTGW 315          
BLAST of mRNA_P-wetherbeei_contig6974.1.1 vs. uniprot
Match: A0A150Q4M3_SORCE (Uncharacterized protein n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150Q4M3_SORCE)

HSP 1 Score: 58.9 bits (141), Expect = 2.190e-7
Identity = 29/60 (48.33%), Postives = 36/60 (60.00%), Query Frame = 1
Query:  115 LTLCADRVRNGNETDVDCGGGSCSQVCATGQNCAAASDCEFGACVGGICGVAVKICSEDC 294
            + LCAD ++NG ETDVDCGG +C Q CAT + C  A DC  G C   +C      C E+C
Sbjct:   42 VNLCADGMKNGEETDVDCGGPTCPQ-CATAKACTEADDCSSGFCADDVC--CDTACDEEC 98          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6974.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6U0_ECTSI1.080e-2441.25REJ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JDC0_9PHAE1.470e-2441.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2M8B869_9DELT1.420e-857.89Uncharacterized protein (Fragment) n=1 Tax=Deltapr... [more]
A0A7J7QGK1_9CHLO4.000e-847.46Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
A9FKQ2_SORC57.890e-840.86Putative secreted protein n=1 Tax=Sorangium cellul... [more]
A0A7Y6PQR5_9DELT9.710e-855.56Uncharacterized protein n=1 Tax=Kofleriaceae bacte... [more]
A0A842QMK4_9ARCH1.650e-744.19Uncharacterized protein n=1 Tax=Candidatus Woesear... [more]
A0A814V2I1_9BILA1.910e-751.02Hypothetical protein n=1 Tax=Adineta steineri TaxI... [more]
A0A815WBS6_ADIRI2.110e-733.64Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
A0A150Q4M3_SORCE2.190e-748.33Uncharacterized protein n=1 Tax=Sorangium cellulos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6974contigP-wetherbeei_contig6974:1510..2677 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009032289.1
Preferred nameRRBP1
PFAMsRib_recp_KP_reg,Spt5-NGN
Model size450
Max annot lvl2759|Eukaryota
KEGG koko:K14000,ko:K16251
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016021,GO:0019538,GO:0023052,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032991,GO:0034641,GO:0034645,GO:0042175,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0098827,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons4
Evalue1.09e-08
EggNOG OGsCOG5164@1|root,KOG1999@2759|Eukaryota
EC2.7.7.6
Descriptionregulation of DNA-templated transcription, elongation
Cds size450
COG categoryK
BRITEbr01611,ko00000,ko00001,ko01000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186949.1964235-CDS-P-wetherbeei_contig6974:1509..15671683186949.1964235-CDS-P-wetherbeei_contig6974:1509..1567Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6974 1510..1567 -
1683186949.206853-CDS-P-wetherbeei_contig6974:1766..18611683186949.206853-CDS-P-wetherbeei_contig6974:1766..1861Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6974 1767..1861 -
1683186949.2159119-CDS-P-wetherbeei_contig6974:2146..22571683186949.2159119-CDS-P-wetherbeei_contig6974:2146..2257Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6974 2147..2257 -
1683186949.2295501-CDS-P-wetherbeei_contig6974:2491..26771683186949.2295501-CDS-P-wetherbeei_contig6974:2491..2677Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6974 2492..2677 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6974.1.1prot_P-wetherbeei_contig6974.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6974 1510..2677 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6974.1.1

>prot_P-wetherbeei_contig6974.1.1 ID=prot_P-wetherbeei_contig6974.1.1|Name=mRNA_P-wetherbeei_contig6974.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=150bp
GRADCSEDTSAGLCGRCLSGYSGATMFANTPCVSTAANLTLCADRVRNGN
ETDVDCGGGSCSQVCATGQNCAAASDCEFGACVGGICGVAVKICSEDCGG
RGNCTYIDTAGTALAATACTVDRLLCFALCSCNDGYYGEACQYTAAEYSG
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mRNA from alignment at P-wetherbeei_contig6974:1510..2677-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6974.1.1 ID=mRNA_P-wetherbeei_contig6974.1.1|Name=mRNA_P-wetherbeei_contig6974.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1168bp|location=Sequence derived from alignment at P-wetherbeei_contig6974:1510..2677- (Phaeothamnion wetherbeei SAG_119_79)
GGCCGCGCGGACTGCTCGGAAGATACCAGCGCCGGCCTCTGCGGCCGCTG CCTCTCCGGCTATTCGGGAGCCACCATGTTTGCGAATACGCCGTGCGTCA GCACAGCGGCAAATCTGACGCTCTGCGCGGACCGCGTTCGCAACGGAAAC GAGACAGACGTTGACTGTGGCGGCGGCTCCTGCTCGGTGAGGGCCGAATG AAGACGGAAGTGGGAGCCACTGTGGTCGCCACCCTTCCTGGTCTTTGAAA GCCCCACTGTGAATGGTTGGGAAGACGTTGAAGTGGCCAACGACCGCTGG CACGCGTCCAGATCCTTCCTCACTCGGGCGATGGCGAGGCGAATGGTTGA GAAGCTTGACGACAATTTCAGTGCTTCCTCATGCTCTTCTCCCTCCACGC TTCGACTTGCTTTGACAAAGCAGGTATGCGCGACGGGGCAAAACTGCGCG GCGGCGTCCGACTGCGAGTTCGGGGCGTGCGTGGGAGGTATCTGCGGTGT CGCGGTCAAGATCTGTTCGGAGGACTGTGGGGTGAGCGAAAGGTCTCATT TTGTCTGCATTTCACTGTGGCTTCATCTAGCTTCCATGTTTGGCGTTCGT TTAGCCGTCGAGCCGTTCACTTCTTCTTGTTGTCGCTGCTGCCGGCACGG CACTTCCATGGCCGCCGCTTTTGCCGCCACTGTCGCTGTTGCTGCCGCCG CTGTCGCCGCCGCGGCCCCTTTGATCGCTTGCTGCTGCCGTCGCTGCCAT CGCCGTCGCCGCCGTCACCGCTTTCGCCGCCGCCATTACAATCGCCACTC CTGCGTCTGCTGCCAGGGACGAGGGAACTGTACATACATCGACACCGCTG GGACGGCCCTAGCTGCTACGGCATGTACTGTCGACAGGCTGTTATGCTTC GCCCTGTGCAGGTTAGCGCGTACGGCTATGAACGCTTCTTTTGAGCTCAT TCTTCCTCTCACCAACCGCTGTGTGCACTGTCGGGCTTAAGCCATTCCCC GGACACCTGGCTGGCACAGTTCTGGACGAGTTCGTTCGCTGTCTTTTCCG GCGATATTTTACTCTCCAATTAAAACACGTCTTCACCGCTTCTTGCCTCC CCCACTGCAGTTGCAATGACGGTTACTACGGGGAAGCATGTCAGTACACC GCTGCGGAGTATTCCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6974:1510..2677-

>mRNA_P-wetherbeei_contig6974.1.1 ID=mRNA_P-wetherbeei_contig6974.1.1|Name=mRNA_P-wetherbeei_contig6974.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig6974:1510..2677- (Phaeothamnion wetherbeei SAG_119_79)
GGCCGCGCGGACTGCTCGGAAGATACCAGCGCCGGCCTCTGCGGCCGCTG
CCTCTCCGGCTATTCGGGAGCCACCATGTTTGCGAATACGCCGTGCGTCA
GCACAGCGGCAAATCTGACGCTCTGCGCGGACCGCGTTCGCAACGGAAAC
GAGACAGACGTTGACTGTGGCGGCGGCTCCTGCTCGCAGGTATGCGCGAC
GGGGCAAAACTGCGCGGCGGCGTCCGACTGCGAGTTCGGGGCGTGCGTGG
GAGGTATCTGCGGTGTCGCGGTCAAGATCTGTTCGGAGGACTGTGGGGGA
CGAGGGAACTGTACATACATCGACACCGCTGGGACGGCCCTAGCTGCTAC
GGCATGTACTGTCGACAGGCTGTTATGCTTCGCCCTGTGCAGTTGCAATG
ACGGTTACTACGGGGAAGCATGTCAGTACACCGCTGCGGAGTATTCCGGC
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