mRNA_P-wetherbeei_contig6962.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6962.1.1
Unique NamemRNA_P-wetherbeei_contig6962.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6962.1.1 vs. uniprot
Match: L8HE84_ACACA (HIV1 Tat interactive protein 2, 30kDa, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HE84_ACACA)

HSP 1 Score: 60.1 bits (144), Expect = 1.660e-8
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 EVKGMGEEAVKVAGFDRVSVWRPGLLGRGDKARLVERIAGYIS 129
            + KG  EE +K   F R ++WRPGLLGRGDKARLVE++A Y+S
Sbjct:   75 KTKGQNEEDIKEMDFARTTIWRPGLLGRGDKARLVEKLAKYVS 117
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BLAST of mRNA_P-wetherbeei_contig6962.1.1 vs. uniprot
Match: H3GPK5_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GPK5_PHYRM)

HSP 1 Score: 53.9 bits (128), Expect = 6.970e-6
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 EVKGMGEEAVKVAGFDRVSVWRPGLLGRGDKARLVERIAGYISPKASRRSI 153
            + KG  EE++K   F+R S++RPGL+ RG+ AR VE IAGY+ P  +  +I
Sbjct:  126 QTKGEVEESIKQLSFERTSIFRPGLINRGELARTVESIAGYLLPSVTTHAI 176
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BLAST of mRNA_P-wetherbeei_contig6962.1.1 vs. uniprot
Match: A0A3R7NAX8_9STRA (NAD(P)-bd_dom domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7NAX8_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 7.920e-6
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    1 EVKGMGEEAVKVAGFDRVSVWRPGLLGRGDKARLVERIAGYISPKASRRSI 153
            + KG  EE +K  GF+R S++RPGL+ RG+K R VE IA Y+ P  + R I
Sbjct:  142 QTKGEVEENIKHLGFERTSIFRPGLIDRGEKTRTVESIASYVLPSITTRII 192
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BLAST of mRNA_P-wetherbeei_contig6962.1.1 vs. uniprot
Match: G5A9K6_PHYSP (NAD(P)-bd_dom domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G5A9K6_PHYSP)

HSP 1 Score: 53.9 bits (128), Expect = 7.980e-6
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 EVKGMGEEAVKVAGFDRVSVWRPGLLGRGDKARLVERIAGYISPKASRRSI 153
            + KG  EE +K   F+R S++RPGL+ RG+ AR VE IAGY+ P  + R+I
Sbjct:  142 QTKGEVEENIKKLEFERTSIFRPGLINRGELARTVESIAGYLLPSVTTRAI 192
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BLAST of mRNA_P-wetherbeei_contig6962.1.1 vs. uniprot
Match: A0A835ZFB8_9STRA (NAD(P)-bd_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFB8_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.860e-5
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 EVKGMGEEAVKVAGFDRVSVWRPGLLGRGDKARLVERIAGYI 126
            + KG  E  VK  GF  VS+W+PGLLGRG+KAR VER+  Y+
Sbjct:  135 KTKGRCENFVKGLGFALVSIWQPGLLGRGEKARFVERMTAYL 176
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BLAST of mRNA_P-wetherbeei_contig6962.1.1 vs. uniprot
Match: A0A2P4X0G2_9STRA (Oxidoreductase htatip2-like protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X0G2_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.860e-5
Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:    1 EVKGMGEEAVKVAGFDRVSVWRPGLLGRGDKARLVERIAGYISPKASRRSI 153
            + KG  EE +K   F+R S++RPGL+ RG+ AR VE IAGY  P  + R I
Sbjct:  142 QTKGEVEENIKNLNFERTSIFRPGLIDRGELARTVESIAGYFLPSITTRGI 192
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BLAST of mRNA_P-wetherbeei_contig6962.1.1 vs. uniprot
Match: D7FHE2_ECTSI (NAD(P)-bd_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHE2_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 3.180e-5
Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 EVKGMGEEAVKVAGFDRVSVWRPGLLGRGDKARLVERIAGYI 126
            +VKG  E+ V+ AG+   S+WRPGLLGRG KA+ VE++A ++
Sbjct:  160 KVKGQCEKLVRSAGYPHTSIWRPGLLGRGSKAKGVEKVARFL 201
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BLAST of mRNA_P-wetherbeei_contig6962.1.1 vs. uniprot
Match: A0A8J4F007_9CHLO (NAD(P)-bd_dom domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4F007_9CHLO)

HSP 1 Score: 51.2 bits (121), Expect = 7.730e-5
Identity = 23/42 (54.76%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 EVKGMGEEAVKVAGFDRVSVWRPGLLGRGDKARLVERIAGYI 126
            + KGM E+A    GF RVS++RPGLL RGDKAR +E++A ++
Sbjct:  146 KTKGMAEQAALEQGFSRVSIFRPGLLNRGDKARGLEKMAHHV 187
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6962.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
L8HE84_ACACA1.660e-860.47HIV1 Tat interactive protein 2, 30kDa, putative n=... [more]
H3GPK5_PHYRM6.970e-647.06Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A3R7NAX8_9STRA7.920e-649.02NAD(P)-bd_dom domain-containing protein n=4 Tax=Ph... [more]
G5A9K6_PHYSP7.980e-649.02NAD(P)-bd_dom domain-containing protein n=3 Tax=Ph... [more]
A0A835ZFB8_9STRA1.860e-557.14NAD(P)-bd_dom domain-containing protein n=1 Tax=Tr... [more]
A0A2P4X0G2_9STRA2.860e-549.02Oxidoreductase htatip2-like protein n=1 Tax=Phytop... [more]
D7FHE2_ECTSI3.180e-552.38NAD(P)-bd_dom domain-containing protein n=2 Tax=Ec... [more]
A0A8J4F007_9CHLO7.730e-554.76NAD(P)-bd_dom domain-containing protein n=1 Tax=Vo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6962contigP-wetherbeei_contig6962:77..521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog164328.Phyra78640
PFAMsNAD_binding_10
Model size445
Max annot lvl4776|Peronosporales
KEGG koko:K17290
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.65e-07
EggNOG OGsCOG0702@1|root,KOG4039@2759|Eukaryota,3Q7UM@4776|Peronosporales
DescriptionNAD(P)H-binding
Cds size204
COG categoryT
BRITEko00000,ko01000,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186948.500971-UTR-P-wetherbeei_contig6962:76..881683186948.500971-UTR-P-wetherbeei_contig6962:76..88Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6962 77..88 +
1683186948.5229163-UTR-P-wetherbeei_contig6962:292..5211683186948.5229163-UTR-P-wetherbeei_contig6962:292..521Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6962 293..521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186948.5133438-CDS-P-wetherbeei_contig6962:88..2921683186948.5133438-CDS-P-wetherbeei_contig6962:88..292Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6962 89..292 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6962.1.1prot_P-wetherbeei_contig6962.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6962 89..292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6962.1.1

>prot_P-wetherbeei_contig6962.1.1 ID=prot_P-wetherbeei_contig6962.1.1|Name=mRNA_P-wetherbeei_contig6962.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=68bp
MGEEAVKVAGFDRVSVWRPGLLGRGDKARLVERIAGYISPKASRRSIWHQ
RDSVLRAALLFCVAIFS*
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mRNA from alignment at P-wetherbeei_contig6962:77..521+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6962.1.1 ID=mRNA_P-wetherbeei_contig6962.1.1|Name=mRNA_P-wetherbeei_contig6962.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=445bp|location=Sequence derived from alignment at P-wetherbeei_contig6962:77..521+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGTGAAAGGGATGGGAGAAGAGGCGGTCAAGGTGGCGGGGTTCGACCG
CGTGTCGGTGTGGCGGCCGGGCCTCCTCGGCCGGGGTGACAAGGCCCGGC
TGGTCGAGCGGATCGCGGGCTATATCTCCCCCAAGGCAAGTCGGCGGTCC
ATCTGGCATCAGAGAGATTCAGTTCTCCGTGCGGCGCTCCTGTTTTGTGT
TGCCATCTTTTCTTAGCAGTCGAATGCCGGGCGAAAAACATTGAAACTTA
GGTACGTTCTCATTTGGGGGACGATGGAGGCGGCAGCCGGCTTCTTTTGA
ATGTTTCACTTGTGTTCTCCTAATTGTGTGGTCACGCCATCCTCACGGTA
TGGGGTTTGTTTGTACATACTTTTTCGAGGGAACGCAAGCCGTTTTTTAA
GTGCATTACTAGCCGGGCGTGTTATAGGGTGTTTTGACCGGTGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6962:77..521+

>mRNA_P-wetherbeei_contig6962.1.1 ID=mRNA_P-wetherbeei_contig6962.1.1|Name=mRNA_P-wetherbeei_contig6962.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig6962:77..521+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGAGAAGAGGCGGTCAAGGTGGCGGGGTTCGACCGCGTGTCGGTGTG
GCGGCCGGGCCTCCTCGGCCGGGGTGACAAGGCCCGGCTGGTCGAGCGGA
TCGCGGGCTATATCTCCCCCAAGGCAAGTCGGCGGTCCATCTGGCATCAG
AGAGATTCAGTTCTCCGTGCGGCGCTCCTGTTTTGTGTTGCCATCTTTTC
TTAG
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