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Homology
BLAST of mRNA_P-wetherbeei_contig696.2.1 vs. uniprot
Match: D7G491_ECTSI (Similar to Dynein heavy chain 3, axonemal (Axonemal beta dynein heavy chain 3) (Ciliary dynein heavy chain 3), partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G491_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 3.540e-17 Identity = 78/257 (30.35%), Postives = 110/257 (42.80%), Query Frame = 1
Query: 1165 ALVKHIRERHMETLRRCVLNYILISPAQRQRLGIVTVPAVLACEAAPMLHQASFPRHGNASNGSRGGGSIDNGXXXXXXXXXXXGGNLPEASFGPWGARESTAPRPGVWKRRFDRARAALAMDSIVTSPALVRARGLLSRCQSMQLIALPATRAALERGAWKTAAPADFEREMLRQIRTARRAALSLLFPGLQDALFGALRAG---------EIQGR------DAHIHRHVAVVNIMVTSVLRSLVERALGSITSFL 1890
A ++ E ++RR VLNY+++ QR RLGI VP G AS G +G WG P W+RRF RAR AL M I SPALV A+ LL++C+ +L+ LP + A ++ +W +F L + R LL+PGL +AL L G E+ R D H+ R++A VN+M S+LR +VE A+ + FL
Sbjct: 976 ACLEETCEAFRASIRRAVLNYVVLDAGQRDRLGISAVPP------------------GFASQG-----------------------------WG-WGKGRGIQKSPPEWQRRFVRAREALNMGQITGSPALVAAQALLAKCRGTRLLRLPKSAAEIQASSWSAMTAEEFRSSQLSHLSRKARRVRRLLYPGLSEALKAQLGVGSKGTRATTAELATRTKSSPPDGHVRRYLAAVNVMTASILRGMVETAISDLQIFL 1184
BLAST of mRNA_P-wetherbeei_contig696.2.1 vs. uniprot
Match: A0A6H5L524_9PHAE (DHC_N2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L524_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 3.610e-17 Identity = 74/253 (29.25%), Postives = 106/253 (41.90%), Query Frame = 1
Query: 1186 ERHMETLRRCVLNYILISPAQRQRLGIVTVPAVLACEAAPMLHQASFPRHGNASNGSRGGGSIDNGXXXXXXXXXXXGGNLPEASFGPWGARESTAPRPGVWKRRFDRARAALAMDSIVTSPALVRARGLLSRCQSMQLIALPATRAALERGAWKTAAPADFEREMLRQIRTARRAALSLLFPGLQDALFGALRAG---------EIQGR------DAHIHRHVAVVNIMVTSVLRSLVERALGSITSFLALY 1899
E ++RR VLNY+L+ QR RLGI VP A E +G WG P W+RR+ RAR AL M I SPALV A+ LL+ C+ +L+ LP + A ++ +W +F L + R LL+PGL +AL L G E+ R D H+ R++A VN+M S+LR +VE A+ + +F ++
Sbjct: 1003 ESFRSSIRRAVLNYVLLDAGQRDRLGIPAVPPGFASE-----------------------------------------------GWG-WGKGRGIHKSPPEWRRRYVRAREALNMGQITGSPALVAAQALLATCRGTRLLRLPKSAAEIQASSWSAMTAEEFRSSQLSHLSRKARRVRRLLYPGLSEALKAQLGVGSNGTRATSAELATRAKPSPPDGHVRRYLAAVNVMTASILRGMVETAISDLQAFFRIH 1207
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 0 |
| Seed ortholog | 2880.D7G491 |
| Preferred name | DNAH12 |
| PFAMs | DHC_N1 |
| Model size | 2576 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K10408 |
| KEGG Pathway | ko05016,map05016 |
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| Evalue | 5.81e-18 |
| EggNOG OGs | COG5245@1|root,KOG3595@2759|Eukaryota |
| Description | dynein light chain binding |
| Cds size | 2574 |
| COG category | Z |
| BRITE | ko00000,ko00001,ko04812 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1683186948.2072895-CDS-P-wetherbeei_contig696:5010..5255 | 1683186948.2072895-CDS-P-wetherbeei_contig696:5010..5255 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig696 5011..5255 - |
| 1683186948.2167544-CDS-P-wetherbeei_contig696:5525..5596 | 1683186948.2167544-CDS-P-wetherbeei_contig696:5525..5596 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig696 5526..5596 - |
| 1683186948.2247574-CDS-P-wetherbeei_contig696:5767..5844 | 1683186948.2247574-CDS-P-wetherbeei_contig696:5767..5844 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig696 5768..5844 - |
| 1683186948.2329924-CDS-P-wetherbeei_contig696:5889..6265 | 1683186948.2329924-CDS-P-wetherbeei_contig696:5889..6265 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig696 5890..6265 - |
| 1683186948.2415361-CDS-P-wetherbeei_contig696:6649..6757 | 1683186948.2415361-CDS-P-wetherbeei_contig696:6649..6757 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig696 6650..6757 - |
| 1683186948.2495015-CDS-P-wetherbeei_contig696:6909..7047 | 1683186948.2495015-CDS-P-wetherbeei_contig696:6909..7047 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig696 6910..7047 - |
| 1683186948.2648678-CDS-P-wetherbeei_contig696:7302..8861 | 1683186948.2648678-CDS-P-wetherbeei_contig696:7302..8861 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig696 7303..8861 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig696.2.1 >prot_P-wetherbeei_contig696.2.1 ID=prot_P-wetherbeei_contig696.2.1|Name=mRNA_P-wetherbeei_contig696.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=858bp
GADRDGSPSVRLKAMTRPPPPLIDPYSRLQAVPVPSCLTGSTLSASPRGD SNYGSGGSNCDGGGGNRGDISCVDSIGAHYSPAAAHLRISGLRGGVALTL AATERSANPFITETGARHDTSAAMAAVAAAGAAAIGTAEEEMARQLAEAT AAKVAEALAASVPSPAEVTVAAASDRPDEAVARALRPVVTFSAPAAATAG ANGSADADAAKAAATAAHAACAARMEEYVGLERYLWYLNKDPMLAAAVAP LEDAAVARILTKVSTGMRQKAAAKSLAETPAVTVPVGTTMPAAMVSQSPP RTPPAIRKTDGAAASAESVARADRARAAAAASTPLKPAMIVAAAGGNAAA PSASNPMLRDEAADIAKSGGGGGNGDWTDAAVQEKRMTALVKHIRERHME TLRRCVLNYILISPAQRQRLGIVTVPAVLACEAAPMLHQASFPRHGNASN GSRGGGSIDNGGGRSGGITSAGGGNLPEASFGPWGARESTAPRPGVWKRR FDRARAALAMDSIVTSPALVRARGLLSRCQSMQLIALPATRAALERGAWK TAAPADFEREMLRQIRTARRAALSLLFPGLQDALFGALRAGEIQGRDAHI HRHVAVVNIMVTSVLRSLVERALGSITSFLALYVRPPPPLPPPLSPALAP TRNSVVPRASAAPTSPRGSNAVGAPLQYRSGPALPASHLLPALSSAVTGS ASRGAMAAPGATVGAAFPPVALLLSTGTPLSGVERQELLPPPWVMARVPA AFRLDLEHLEGEGLSCRQQLRQLSKSVFRVTVMLAVCFRRTPPVSFFEEA TPAADAPSSRLTPGWLQPSVTGRPAGSRVGGGSGGGGGGGSGGAAGDVTS AGAAAGLQ back to topmRNA from alignment at P-wetherbeei_contig696:5011..8861- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig696.2.1 ID=mRNA_P-wetherbeei_contig696.2.1|Name=mRNA_P-wetherbeei_contig696.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3851bp|location=Sequence derived from alignment at P-wetherbeei_contig696:5011..8861- (Phaeothamnion wetherbeei SAG_119_79) GGCGCAGACAGAGATGGCAGCCCTTCGGTGCGGTTAAAAGCAATGACGCG
GCCACCACCGCCACTGATTGACCCATACTCACGGCTGCAGGCCGTCCCGG
TGCCGTCTTGCTTGACCGGCAGCACTTTGAGCGCCAGCCCCCGTGGCGAC
AGCAACTACGGTAGCGGCGGCAGCAATTGCGATGGCGGTGGCGGCAATCG
AGGGGATATCAGCTGCGTGGATTCGATCGGAGCGCATTACAGCCCGGCAG
CGGCACATCTGCGCATAAGCGGCCTTCGCGGAGGCGTCGCTCTCACCTTG
GCGGCGACGGAAAGATCAGCGAATCCATTCATCACCGAGACTGGCGCTAG
GCACGACACATCGGCAGCTATGGCAGCAGTAGCGGCAGCGGGAGCGGCAG
CAATAGGGACAGCAGAAGAGGAAATGGCAAGGCAACTTGCCGAAGCGACA
GCCGCGAAAGTAGCGGAGGCGCTGGCAGCGTCGGTACCATCACCTGCCGA
GGTTACCGTCGCAGCAGCCAGTGATCGACCCGACGAAGCAGTGGCACGGG
CGCTGCGCCCCGTCGTCACATTTTCTGCACCCGCAGCAGCGACCGCAGGT
GCAAATGGAAGCGCTGACGCTGACGCGGCAAAAGCAGCGGCGACGGCAGC
TCACGCGGCTTGCGCGGCACGCATGGAGGAGTACGTCGGGCTCGAGCGGT
ACTTGTGGTACCTGAACAAAGACCCGATGCTGGCCGCGGCGGTTGCCCCA
CTGGAAGACGCCGCAGTGGCGCGAATCCTCACCAAAGTCTCCACCGGTAT
GCGGCAGAAAGCGGCGGCAAAATCGCTCGCCGAAACTCCGGCGGTGACAG
TTCCAGTGGGAACAACGATGCCTGCTGCCATGGTGTCCCAGTCGCCGCCT
CGGACGCCACCCGCAATACGCAAGACTGACGGTGCTGCGGCGTCGGCGGA
AAGCGTCGCTAGGGCAGATAGGGCGAGGGCTGCCGCTGCCGCATCGACGC
CACTGAAACCAGCTATGATAGTCGCCGCCGCTGGCGGCAATGCCGCTGCT
CCTTCCGCGAGCAACCCGATGCTGCGTGATGAAGCCGCCGACATTGCTAA
AAGTGGGGGCGGTGGTGGCAACGGTGACTGGACCGATGCCGCTGTTCAAG
AGAAGCGGATGACGGCTCTGGTCAAGCATATTAGGGAGCGCCATATGGAA
ACGTTGCGTCGCTGCGTCCTAAATTACATTCTGATCAGCCCGGCACAACG
TCAGCGGCTTGGCATCGTCACTGTGCCAGCAGTGCTTGCCTGCGAGGCGG
CGCCGATGCTGCATCAGGCGTCTTTTCCTCGGCACGGCAATGCTTCAAAT
GGCAGCCGCGGCGGCGGGAGCATCGACAACGGCGGCGGCCGCAGCGGTGG
CATCACTTCAGCTGGAGGCGGCAATCTTCCCGAAGCGAGCTTTGGGCCGT
GGGGGGCCAGAGAATCCACAGCGCCACGGCCGGGTGTGTGGAAGCGGCGC
TTCGACCGCGCACGTGCTGCGCTTGCCATGGACTCCATCGTAACCAGCCC
GGCCCTCGTGTGAGTCGAGCTACCGGAAGCCGTGGCTCCCATGTTCTTGT
TTCATTCTGCGTTTTTGTCCCGCGCGGTGACCTGTAATCTTGTTACAAGG
TAAATGGGAGGAAGCCGAAACTGTGGCTCATTAGCGGCGCCAACGGCGGA
GTCAGCGACGGCGCCGGCGGCGCTGGCGATGTGACAGAACGATCCTATTA
CAGAGTTGAACACATCTGAATCTTTCCCGGTCTCTTCCTCCGGCATGGCT
AACCCCATACATAGGCGGGCAAGGGGTCTGCTGAGCCGCTGCCAGTCGAT
GCAGCTGATCGCTCTGCCCGCCACCCGGGCGGCCTTGGAGCGTGGCGCTT
GGAAGACAGCGGCGCCTGCCGACTTCGAGCGGGAAATGCTGCGTCAGATC
AGGTTCGTGCGGCAGACACAGCGATGGTGGTGACAGTGAGGCAAAGAATA
TGGAAGGCATCAGAAAACTTGTTTCGTTTGAAGCGACTTCTACTTGCCGG
CGGGAAGCTCACATTCAAGGTTTCCCTTCAAACCTTTGCGTGGACCTTTT
TTAGGACGGCGCGTCGGGCGGCGCTCTCGCTGCTGTTTCCGGGACTGCAG
GACGCGCTGTTCGGGGCCTTGCGGGCTGGCGAAATCCAGGGTCGAGATGC
ACACATCCACAGGTGAGATGGGACCGGAGGAATAGCGGAGTGAGCCATGG
CGGACGCGGCGGTGAAGGCGGCGACAGATGGTGGTGGCGGCGGCAGAGGC
ACGGACTGACGCGATTGCGCGTCCTTGTTTGAAAGCGTGAGGCAGTTGCT
GCGGAGCTTGTTGGAAATGAACCGGGGCGGGATTGATGATGCGCCTCCCT
TGGCCCAAGCGCAGCCGGATAGTCTTGTAGGCTTTCAGGATGCCTGCCAT
AAACTTGTTAGTGCATTTTGTGCCATCCCTCCCTTGCGCCTCGCCTCCGT
TCTCTCTTCTAAATTCTTAATTCTTCCATCTTCCACTCTGCACGTTAGCG
TTTCCCGTAAACCTTGCTTGTTACCATTCTCCCCGTGTCCCTTCAGGCAC
GTTGCCGTGGTGAACATCATGGTTACGAGCGTCCTCCGCTCCCTCGTGGA
GCGCGCCCTCGGCAGCATCACGTCGTTCCTCGCCCTGTACGTCAGGCCGC
CGCCGCCGCTACCCCCGCCACTGTCACCCGCTCTGGCACCCACGCGTAAC
TCGGTCGTGCCCCGGGCCAGCGCAGCGCCCACGTCGCCTCGAGGCAGCAA
CGCAGTCGGAGCGCCGCTGCAGTACCGCTCTGGACCGGCATTGCCGGCGT
CGCATCTGCTGCCGGCGCTGTCGTCCGCAGTGACAGGATCCGCGTCAAGG
GGGGCGATGGCGGCACCGGGAGCCACTGTCGGGGCAGCCTTCCCCCCCGT
GGCATTGCTGCTGTCGACGGGCGAAGGGCTGTCACTCGGCAACGAGCGGC
GGCCGCCAAAGCTGGTGACGCCACTTAGCGGAGTGGAACGGCAGGAGCTC
CTGCCGCCGCCGTGGGTGATGGCACGAGTCCCGGCAGCCTTCAGGTGCGA
ACATTGACGCCTACTGCCGCCCTTTCAGGCGATCCTGTGCAGACGTGTTT
GCTTGGAAGCTGCTCGCTGAGTCCGTTTGTAATTCCTGTGCAACCACATG
GGTTTGCATCCCTGCTGGTCCGGCACTTTCGCGTAATTGATGCTTTGGAC
CCTCTCCCATCTCAGATTGGACCTCGAGCACCTGGAGGGCGAAGGGCTCA
GCTGCCGTCAGCAGCTCCGCCAGCTCTCCAAAAGTGGTAAGGACCTTCTT
GCGCCGAACCGCTCACAGCAACACCGCCTCAGATGCCGGCCGCCAGGTTT
TCTTTCGCGCCGCCGCCATATCCTCTTTGCTGACAGAGTTGGATGGTAAT
ACCTTCAAAATAGACTTAGTCATTCTGAATGCCCGCTGCGGGGCCGTTCG
TTTGGTTATGTTGGAGGTTCGTTGACGTTTTCCCCCACTCTCCCCTCCCT
CTCATACCGCTCTGTTTTTCTACCGCCGCTCCTGTTGCCCGCGAACGGGT
ATGAAGTCTTTCGGGTGACGGTGATGCTGGCAGTTTGCTTTCGTCGCACG
CCGCCAGTCTCGTTCTTCGAGGAAGCCACGCCCGCCGCCGACGCCCCGTC
CTCCCGCCTGACACCAGGATGGCTGCAGCCTTCCGTTACCGGTCGGCCTG
CCGGCTCCCGCGTCGGCGGCGGCTCCGGCGGCGGCGGCGGCGGTGGCAGT
GGCGGCGCTGCTGGAGACGTCACCTCGGCAGGAGCAGCAGCGGGCTTGCA
G back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig696:5011..8861- >mRNA_P-wetherbeei_contig696.2.1 ID=mRNA_P-wetherbeei_contig696.2.1|Name=mRNA_P-wetherbeei_contig696.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2574bp|location=Sequence derived from alignment at P-wetherbeei_contig696:5011..8861- (Phaeothamnion wetherbeei SAG_119_79) GGCGCAGACAGAGATGGCAGCCCTTCGGTGCGGTTAAAAGCAATGACGCG GCCACCACCGCCACTGATTGACCCATACTCACGGCTGCAGGCCGTCCCGG TGCCGTCTTGCTTGACCGGCAGCACTTTGAGCGCCAGCCCCCGTGGCGAC AGCAACTACGGTAGCGGCGGCAGCAATTGCGATGGCGGTGGCGGCAATCG AGGGGATATCAGCTGCGTGGATTCGATCGGAGCGCATTACAGCCCGGCAG CGGCACATCTGCGCATAAGCGGCCTTCGCGGAGGCGTCGCTCTCACCTTG GCGGCGACGGAAAGATCAGCGAATCCATTCATCACCGAGACTGGCGCTAG GCACGACACATCGGCAGCTATGGCAGCAGTAGCGGCAGCGGGAGCGGCAG CAATAGGGACAGCAGAAGAGGAAATGGCAAGGCAACTTGCCGAAGCGACA GCCGCGAAAGTAGCGGAGGCGCTGGCAGCGTCGGTACCATCACCTGCCGA GGTTACCGTCGCAGCAGCCAGTGATCGACCCGACGAAGCAGTGGCACGGG CGCTGCGCCCCGTCGTCACATTTTCTGCACCCGCAGCAGCGACCGCAGGT GCAAATGGAAGCGCTGACGCTGACGCGGCAAAAGCAGCGGCGACGGCAGC TCACGCGGCTTGCGCGGCACGCATGGAGGAGTACGTCGGGCTCGAGCGGT ACTTGTGGTACCTGAACAAAGACCCGATGCTGGCCGCGGCGGTTGCCCCA CTGGAAGACGCCGCAGTGGCGCGAATCCTCACCAAAGTCTCCACCGGTAT GCGGCAGAAAGCGGCGGCAAAATCGCTCGCCGAAACTCCGGCGGTGACAG TTCCAGTGGGAACAACGATGCCTGCTGCCATGGTGTCCCAGTCGCCGCCT CGGACGCCACCCGCAATACGCAAGACTGACGGTGCTGCGGCGTCGGCGGA AAGCGTCGCTAGGGCAGATAGGGCGAGGGCTGCCGCTGCCGCATCGACGC CACTGAAACCAGCTATGATAGTCGCCGCCGCTGGCGGCAATGCCGCTGCT CCTTCCGCGAGCAACCCGATGCTGCGTGATGAAGCCGCCGACATTGCTAA AAGTGGGGGCGGTGGTGGCAACGGTGACTGGACCGATGCCGCTGTTCAAG AGAAGCGGATGACGGCTCTGGTCAAGCATATTAGGGAGCGCCATATGGAA ACGTTGCGTCGCTGCGTCCTAAATTACATTCTGATCAGCCCGGCACAACG TCAGCGGCTTGGCATCGTCACTGTGCCAGCAGTGCTTGCCTGCGAGGCGG CGCCGATGCTGCATCAGGCGTCTTTTCCTCGGCACGGCAATGCTTCAAAT GGCAGCCGCGGCGGCGGGAGCATCGACAACGGCGGCGGCCGCAGCGGTGG CATCACTTCAGCTGGAGGCGGCAATCTTCCCGAAGCGAGCTTTGGGCCGT GGGGGGCCAGAGAATCCACAGCGCCACGGCCGGGTGTGTGGAAGCGGCGC TTCGACCGCGCACGTGCTGCGCTTGCCATGGACTCCATCGTAACCAGCCC GGCCCTCGTGCGGGCAAGGGGTCTGCTGAGCCGCTGCCAGTCGATGCAGC TGATCGCTCTGCCCGCCACCCGGGCGGCCTTGGAGCGTGGCGCTTGGAAG ACAGCGGCGCCTGCCGACTTCGAGCGGGAAATGCTGCGTCAGATCAGGAC GGCGCGTCGGGCGGCGCTCTCGCTGCTGTTTCCGGGACTGCAGGACGCGC TGTTCGGGGCCTTGCGGGCTGGCGAAATCCAGGGTCGAGATGCACACATC CACAGGCACGTTGCCGTGGTGAACATCATGGTTACGAGCGTCCTCCGCTC CCTCGTGGAGCGCGCCCTCGGCAGCATCACGTCGTTCCTCGCCCTGTACG TCAGGCCGCCGCCGCCGCTACCCCCGCCACTGTCACCCGCTCTGGCACCC ACGCGTAACTCGGTCGTGCCCCGGGCCAGCGCAGCGCCCACGTCGCCTCG AGGCAGCAACGCAGTCGGAGCGCCGCTGCAGTACCGCTCTGGACCGGCAT TGCCGGCGTCGCATCTGCTGCCGGCGCTGTCGTCCGCAGTGACAGGATCC GCGTCAAGGGGGGCGATGGCGGCACCGGGAGCCACTGTCGGGGCAGCCTT CCCCCCCGTGGCATTGCTGCTGTCGACGGGCACGCCACTTAGCGGAGTGG AACGGCAGGAGCTCCTGCCGCCGCCGTGGGTGATGGCACGAGTCCCGGCA GCCTTCAGATTGGACCTCGAGCACCTGGAGGGCGAAGGGCTCAGCTGCCG TCAGCAGCTCCGCCAGCTCTCCAAAAGTGTCTTTCGGGTGACGGTGATGC TGGCAGTTTGCTTTCGTCGCACGCCGCCAGTCTCGTTCTTCGAGGAAGCC ACGCCCGCCGCCGACGCCCCGTCCTCCCGCCTGACACCAGGATGGCTGCA GCCTTCCGTTACCGGTCGGCCTGCCGGCTCCCGCGTCGGCGGCGGCTCCG GCGGCGGCGGCGGCGGTGGCAGTGGCGGCGCTGCTGGAGACGTCACCTCG GCAGGAGCAGCAGCGGGCTTGCAG back to top
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