mRNA_P-wetherbeei_contig6949.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6949.1.1
Unique NamemRNA_P-wetherbeei_contig6949.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6949.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6949contigP-wetherbeei_contig6949:363..2389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2027
Hectar predicted targeting categoryother localisation
Exons1
Cds size1029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186947.9035602-UTR-P-wetherbeei_contig6949:362..11511683186947.9035602-UTR-P-wetherbeei_contig6949:362..1151Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6949 363..1151 -
1683186947.9237456-UTR-P-wetherbeei_contig6949:2180..23891683186947.9237456-UTR-P-wetherbeei_contig6949:2180..2389Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6949 2181..2389 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186947.9157188-CDS-P-wetherbeei_contig6949:1151..21801683186947.9157188-CDS-P-wetherbeei_contig6949:1151..2180Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6949 1152..2180 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6949.1.1prot_P-wetherbeei_contig6949.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6949 1152..2180 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6949.1.1

>prot_P-wetherbeei_contig6949.1.1 ID=prot_P-wetherbeei_contig6949.1.1|Name=mRNA_P-wetherbeei_contig6949.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=343bp
MLDDIVSSPLFEIVVDFSGPNEFIYYALVSKRWHESMKQRSAKELVTSTA
RNAALVSPSRLEFALAPGALPWCPCLLREICQQPNAMALLRVAKKSSLDM
AMPGYRALVPYAAACRGRLDMLQFAVENSLMPRDASLVARAAAEHGRKRA
LLLLLKRQQRISRHRSSISHSGRGSGGTRGASGGTRGGGGGGPEEKGDRS
PLPPLTGVCEAAARAGRLGMVRFAVDNGFPAGDLLCFNAALHGHTRILAW
LHGGCGARRGIACHCFCGENCQAFDDADDCPACHALRDGCIACFEAYREA
HRAAGSEGFSHGGGWGSKPDDALSPDFNLAVHGCPCGLTACA*
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mRNA from alignment at P-wetherbeei_contig6949:363..2389-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6949.1.1 ID=mRNA_P-wetherbeei_contig6949.1.1|Name=mRNA_P-wetherbeei_contig6949.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2027bp|location=Sequence derived from alignment at P-wetherbeei_contig6949:363..2389- (Phaeothamnion wetherbeei SAG_119_79)
ACCACGCTTCCGGCACCGAGAAAGAGAATGTACCAAGGTTGAAACACTGT
GCCGACCAGGCTTCTGCGCATCAAAAGGCCAGACCAACCCCGCCGCATGC
AAGGTCTTTCAATTTTCGAAAAAGTTGCCGCTGGGATCGTGATGGGAAAT
TGGCCGGCGAGACATCTGGGGTGAAGAAACTCGCCATCTTCGTCAGCAAC
AATCGCAGCATGCTTGACGACATCGTCAGCTCTCCTTTGTTCGAGATTGT
CGTGGACTTCTCGGGGCCGAATGAGTTCATCTACTATGCATTGGTGTCCA
AGCGATGGCACGAGTCCATGAAACAGAGAAGCGCGAAGGAGCTCGTCACC
AGCACCGCGCGCAATGCAGCCCTAGTCTCCCCGTCCCGCCTGGAGTTCGC
GCTGGCCCCTGGAGCGCTTCCCTGGTGTCCGTGCCTCCTGCGCGAGATTT
GCCAGCAACCGAACGCCATGGCGCTCCTCCGCGTCGCGAAGAAGAGCTCG
CTCGACATGGCCATGCCCGGCTACCGAGCTCTCGTGCCCTACGCGGCGGC
CTGCCGCGGCCGCCTCGACATGCTGCAGTTCGCCGTCGAGAACAGTCTAA
TGCCCCGGGACGCCTCGCTCGTCGCCCGCGCCGCCGCCGAGCACGGCCGC
AAGAGGGCGCTCCTCCTGCTGCTCAAGCGCCAACAGCGCATCAGCCGTCA
CCGCAGCAGCATCAGCCATAGCGGCAGGGGAAGTGGCGGCACGAGGGGCG
CCAGTGGCGGCACGAGGGGCGGCGGTGGTGGCGGTCCCGAGGAAAAAGGC
GACCGGAGCCCGCTGCCGCCGCTGACGGGAGTCTGCGAGGCGGCCGCCCG
TGCCGGACGGCTAGGCATGGTGCGCTTCGCCGTCGACAATGGCTTCCCCG
CCGGCGACCTCCTCTGCTTCAACGCCGCGCTACACGGCCACACCCGCATT
CTCGCCTGGCTCCACGGCGGCTGCGGGGCGCGCCGTGGCATCGCCTGCCA
CTGCTTCTGTGGCGAGAACTGCCAGGCTTTTGACGATGCCGACGACTGCC
CGGCCTGCCACGCGCTGCGGGACGGCTGCATCGCGTGCTTCGAGGCGTAC
AGGGAGGCCCACCGCGCCGCCGGCTCCGAAGGTTTCTCGCACGGCGGCGG
CTGGGGCAGCAAGCCCGATGACGCGCTCAGCCCCGACTTTAACTTGGCGG
TCCACGGCTGCCCTTGCGGGTTGACTGCTTGCGCGTAGCTGCAGCGCTCG
GGTCGTGGCTGGCAGTGATCCCGTCAGAGTGAGGGAAACGAGAATTAGGC
AGGTCGCCGGCGCTGGCTGGTATTCCCGCCCTGCCAGTTGGCCCGGCCCG
CCGACGGCAAGAACGCCGTAGTTGGGAGGATGCGGGAACACCTGGCGATT
GCGGCTGGCGGCTTGCACCGTGCGGCGGCCGCAGGCTGTCGGCCGGTGCG
GCAAAAGGTGCCAGCCGCGAGCGGCCGACTGACGCCGCTGGGCCATGTGG
CAAGGGCAGGGGCCGCGAAACTGCGGCGGCTGTTAGTGACCGTTTCCGCG
CCAGAACGCGGCGCTGGCCGCCTGAAACAGCTTGGATTGGAAAGACCTAG
CGAGCCGATGAGATACGGCGGAAGATGCTGCATCGACGGCAGAAGCGGGT
GTGTACGAAGTTAGGAAGGGACCTTCAGAAATATCCAGCGGCTGCCAGCA
AAATACCACAGCAAACCGAGATAGCCTTCATTGGACTGGGAGCAACGCGC
ATACGGCACCGTTGGGGTTCATCACGCTGAATTGACCTCTTGCGAGAGCA
ACGAGGACTGAAACGAAATTGATGGTCCAGGCGATCGTTTGAGAACCACA
CTACGAGCATTGGTAGGGTAGCCATGCGAAAATTGGTAGGGTAGCGGGAG
GGAAGAGAGGGCTCGAGAGGCGGCGCCTGTTACATCGAGTTCGGGACGAC
GGCGCACGGCTTATCAGCCGAGCCTGGGTTCTGCGGGTTGTTTGTAATTT
GCTCGTCTTCTGCTCCCCAGCACGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6949:363..2389-

>mRNA_P-wetherbeei_contig6949.1.1 ID=mRNA_P-wetherbeei_contig6949.1.1|Name=mRNA_P-wetherbeei_contig6949.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1029bp|location=Sequence derived from alignment at P-wetherbeei_contig6949:363..2389- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTGACGACATCGTCAGCTCTCCTTTGTTCGAGATTGTCGTGGACTT
CTCGGGGCCGAATGAGTTCATCTACTATGCATTGGTGTCCAAGCGATGGC
ACGAGTCCATGAAACAGAGAAGCGCGAAGGAGCTCGTCACCAGCACCGCG
CGCAATGCAGCCCTAGTCTCCCCGTCCCGCCTGGAGTTCGCGCTGGCCCC
TGGAGCGCTTCCCTGGTGTCCGTGCCTCCTGCGCGAGATTTGCCAGCAAC
CGAACGCCATGGCGCTCCTCCGCGTCGCGAAGAAGAGCTCGCTCGACATG
GCCATGCCCGGCTACCGAGCTCTCGTGCCCTACGCGGCGGCCTGCCGCGG
CCGCCTCGACATGCTGCAGTTCGCCGTCGAGAACAGTCTAATGCCCCGGG
ACGCCTCGCTCGTCGCCCGCGCCGCCGCCGAGCACGGCCGCAAGAGGGCG
CTCCTCCTGCTGCTCAAGCGCCAACAGCGCATCAGCCGTCACCGCAGCAG
CATCAGCCATAGCGGCAGGGGAAGTGGCGGCACGAGGGGCGCCAGTGGCG
GCACGAGGGGCGGCGGTGGTGGCGGTCCCGAGGAAAAAGGCGACCGGAGC
CCGCTGCCGCCGCTGACGGGAGTCTGCGAGGCGGCCGCCCGTGCCGGACG
GCTAGGCATGGTGCGCTTCGCCGTCGACAATGGCTTCCCCGCCGGCGACC
TCCTCTGCTTCAACGCCGCGCTACACGGCCACACCCGCATTCTCGCCTGG
CTCCACGGCGGCTGCGGGGCGCGCCGTGGCATCGCCTGCCACTGCTTCTG
TGGCGAGAACTGCCAGGCTTTTGACGATGCCGACGACTGCCCGGCCTGCC
ACGCGCTGCGGGACGGCTGCATCGCGTGCTTCGAGGCGTACAGGGAGGCC
CACCGCGCCGCCGGCTCCGAAGGTTTCTCGCACGGCGGCGGCTGGGGCAG
CAAGCCCGATGACGCGCTCAGCCCCGACTTTAACTTGGCGGTCCACGGCT
GCCCTTGCGGGTTGACTGCTTGCGCGTAG
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