mRNA_P-wetherbeei_contig6946.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6946.1.2
Unique NamemRNA_P-wetherbeei_contig6946.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6946.1.2 vs. uniprot
Match: A0A7S2V6E6_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E6_9STRA)

HSP 1 Score: 288 bits (738), Expect = 1.200e-88
Identity = 163/312 (52.24%), Postives = 202/312 (64.74%), Query Frame = 1
Query:  406 GMAAMAAAGYPMNPLMAG-----------------GLAGMP-QQDKVVRELFIGNTPVGTSDFVLLEFLNAAMKQVVNMTTSPGNPIISCRVSSKFAFVELRSIEEASNALNLTGIPFMGQCLNISRPSKYRGPTTPARTWQELTGQRMPAPTGMAGMSGMGVDPTTKVYRELYIGNTTPTMTEGLLGGFIAGTMEKVGLTKGAGSPVVHVRNSGNFAFVEFRSVEEASNALCLSGVPFMGQALRISRPSKYPGPQVAHPTWDEVVARFSGATGVXXXXXXXXAAVPPTRVIRLSNMVTAEDLGKDENVDEL 1287
            G+AA+   G   NPL+AG                     MP Q DK  RELF+GNTP GTS+ VL+EFLNAA+ QV  +TT+PGNPII CRVS+KFAF+ELRS EE +N L+L GIPFMGQ L I RP+KY GP   A TWQ LTGQ+ P    +       VDP+TK+YRELYIG+TT  MTE  L  F+   M++VGLT   G+P+V VR+SG FAFVE RS+EEA+N L L+ +PFMGQ L+I RPSKYPGPQV H  W++V+A++              A   P+RVI LSNMVT ++L  D    E+
Sbjct:  159 GVAALGTPGAAANPLLAGLXXXXXXXXXXXXXXXXXXXXMPVQADKAFRELFVGNTPPGTSELVLMEFLNAALNQV-KLTTAPGNPIIGCRVSNKFAFIELRSAEETNNCLSLNGIPFMGQLLKIGRPTKYCGPVIQASTWQALTGQQAPEGASV-------VDPSTKLYRELYIGSTTAEMTELGLQEFLGTAMQQVGLTLQEGNPIVQVRHSGTFAFVELRSIEEANNCLNLNSIPFMGQFLKIGRPSKYPGPQVPHLNWEDVLAKYMAGE---MPTGGGAAQQQPSRVIALSNMVTTDELMDDTTYQEI 459          
BLAST of mRNA_P-wetherbeei_contig6946.1.2 vs. uniprot
Match: A0A7S3XTW3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTW3_HETAK)

HSP 1 Score: 283 bits (724), Expect = 5.240e-88
Identity = 157/315 (49.84%), Postives = 199/315 (63.17%), Query Frame = 1
Query:  421 AAAGYPMNPLMAGGLAGMPQQDKVVRELFIGNTPVGTSDFVLLEFLNAAMKQVVNMTTSPGNPIISCRVSSKFAFVELRSIEEASNALNLTGIPFMGQCLNISRPSKYRGPTTPARTWQELTGQRMPA-PTGMAGMSGMGVDPTTKVYRELYIGNTTPTMTEGLLGGFIAGTMEKVGLTKGAGSPVVHVRNSGNFAFVEFRSVEEASNALCLSGVPFMGQALRISRPSKYPGPQVAHPTWDEVVARFSGATGVXXXXXXXXAAVP-------------------------PTRVIRLSNMVTAEDLGKDENVDEL 1287
            AA G P   L AG        DK  RELF+GNTP GTS+ VL+EFLNAAM QV       GNPI+SCR+S+KFAF+ELR+ EEA+N LNL GIPFMG  L + RP+KY GP TPA+TWQ+LTGQ  PA PT +A      VDP TK+YR+LY+GN +P MTE  L  F+   ME+VGL +  G+ ++ VR SG FAF+E RSVEEAS+ + L+G+PFMGQ L+I RP+KYPGP+V H  WD+++A++              AA P                         P++V+ LSNMVT +DL  DE  DE+
Sbjct:   32 AAIGAPGAALTAGLAGAAAAADKTKRELFVGNTPPGTSEVVLMEFLNAAMIQV-KQNIEEGNPIMSCRMSAKFAFIELRTAEEANNCLNLNGIPFMGYYLKVGRPTKYAGPITPAKTWQQLTGQAPPADPTAVA------VDPQTKIYRDLYVGNCSPEMTEPALKEFLGSAMEQVGLNQQEGNCILQVRLSGTFAFIEVRSVEEASHMMNLNGIPFMGQFLKIKRPTKYPGPEVPHLNWDDILAKYMAGELKAKPKMPAVAAAPAAVPSXXXXXXXXXXXXXXXAGPGTPSKVMTLSNMVTHDDLADDETYDEI 339          
BLAST of mRNA_P-wetherbeei_contig6946.1.2 vs. uniprot
Match: A0A835ZHK3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHK3_9STRA)

HSP 1 Score: 283 bits (723), Expect = 1.190e-86
Identity = 161/318 (50.63%), Postives = 206/318 (64.78%), Query Frame = 1
Query:  391 IPSYGGMAAMAAAGYPMNPLMAGGL-------AGMPQQDKVVRELFIGNTPVGTSDFVLLEFLNAAMKQVVNMTTSPGNPIISCRVSSKFAFVELRSIEEASNALNLTGIPFMGQCLNISRPSKYRGPTTPARTWQELTGQ-RMPAPTGMAGMSGM--GVDPTTKVYRELYIGNTTPTMTEGLLGGFIAGTMEKVGL-TKGAGSPVVHVRNSGNFAFVEFRSVEEASNALCLSGVPFMGQALRISRPSKYPGPQVAHPTWDEVVARFSGATGVXXXXXXXXAAV--PPTRVIRLSNMVTAEDLGKDENVDELQVRKAG 1305
            +P   G+   AA G  +NP++A  L       A  P  DK   ELF+GNTP  TS+FVLL FLNAAM QV N+ T+PGNPI+ CRVS+KFAF+ELRS++E +N L+L  IPFMG  L I RPSKYRGP     TWQ LTGQ  +   T M G  G   G+DP TKVYRELY+GN  PTMTE  +  F+  T++KVGL T   G+PVV  R+SGNF+F+E RS+E+A+  L L+G+PFMG  LRISRP+KY GP     TW +V+AR     G         AA   P TRV+RL+NM++A+DL  +E + +++    G
Sbjct:    8 MPGMAGLYGQAAMG--INPMIANMLQQAVTPGAFTPVPDKTQLELFVGNTPPNTSEFVLLNFLNAAMAQV-NLNTAPGNPIVQCRVSNKFAFIELRSVDETNNCLSLNQIPFMGTPLKIGRPSKYRGPPVNCTTWQALTGQPELAGGTMMPGAGGSMSGLDPATKVYRELYVGNVQPTMTEASIAEFLGTTLQKVGLATSAPGNPVVIARSSGNFSFIEMRSIEDANAMLNLNGIPFMGSTLRISRPAKYAGPMTPAMTWPDVLARLVAQGGGADKALGTPAAPTQPATRVLRLNNMLSADDLADEEGLADIEEETKG 322          
BLAST of mRNA_P-wetherbeei_contig6946.1.2 vs. uniprot
Match: A0A7S4D6W7_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6W7_HETAK)

HSP 1 Score: 283 bits (724), Expect = 2.510e-86
Identity = 157/315 (49.84%), Postives = 199/315 (63.17%), Query Frame = 1
Query:  421 AAAGYPMNPLMAGGLAGMPQQDKVVRELFIGNTPVGTSDFVLLEFLNAAMKQVVNMTTSPGNPIISCRVSSKFAFVELRSIEEASNALNLTGIPFMGQCLNISRPSKYRGPTTPARTWQELTGQRMPA-PTGMAGMSGMGVDPTTKVYRELYIGNTTPTMTEGLLGGFIAGTMEKVGLTKGAGSPVVHVRNSGNFAFVEFRSVEEASNALCLSGVPFMGQALRISRPSKYPGPQVAHPTWDEVVARFSGATGVXXXXXXXXAAVP-------------------------PTRVIRLSNMVTAEDLGKDENVDEL 1287
            AA G P   L AG        DK  RELF+GNTP GTS+ VL+EFLNAAM QV       GNPI+SCR+S+KFAF+ELR+ EEA+N LNL GIPFMG  L + RP+KY GP TPA+TWQ+LTGQ  PA PT +A      VDP TK+YR+LY+GN +P MTE  L  F+   ME+VGL +  G+ ++ VR SG FAF+E RSVEEAS+ + L+G+PFMGQ L+I RP+KYPGP+V H  WD+++A++              AA P                         P++V+ LSNMVT +DL  DE  DE+
Sbjct:   32 AAIGAPGAALTAGLAGAAAAADKTKRELFVGNTPPGTSEVVLMEFLNAAMIQV-KQNIEEGNPIMSCRMSAKFAFIELRTAEEANNCLNLNGIPFMGYYLKVGRPTKYAGPITPAKTWQQLTGQAPPADPTAVA------VDPQTKIYRDLYVGNCSPEMTEPALKEFLGSAMEQVGLNQQEGNCILQVRLSGTFAFIEVRSVEEASHMMNLNGIPFMGQFLKIKRPTKYPGPEVPHLNWDDILAKYMAGELKAKPKMPAVAAAPAAVPSXXXXXXXXXXXXXXXAGPGTPSKVMTLSNMVTHDDLADDETYDEI 339          
BLAST of mRNA_P-wetherbeei_contig6946.1.2 vs. uniprot
Match: A0A7S4D6X1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6X1_HETAK)

HSP 1 Score: 269 bits (688), Expect = 1.270e-82
Identity = 140/247 (56.68%), Postives = 177/247 (71.66%), Query Frame = 1
Query:  421 AAAGYPMNPLMAGGLAGMPQQDKVVRELFIGNTPVGTSDFVLLEFLNAAMKQVVNMTTSPGNPIISCRVSSKFAFVELRSIEEASNALNLTGIPFMGQCLNISRPSKYRGPTTPARTWQELTGQRMPA-PTGMAGMSGMGVDPTTKVYRELYIGNTTPTMTEGLLGGFIAGTMEKVGLTKGAGSPVVHVRNSGNFAFVEFRSVEEASNALCLSGVPFMGQALRISRPSKYPGPQVAHPTWDEVVARF 1158
            AA G P   L AG        DK  RELF+GNTP GTS+ VL+EFLNAAM QV       GNPI+SCR+S+KFAF+ELR+ EEA+N LNL GIPFMG  L + RP+KY GP TPA+TWQ+LTGQ  PA PT +A      VDP TK+YR+LY+GN +P MTE  L  F+   ME+VGL +  G+ ++ VR SG FAF+E RSVEEAS+ + L+G+PFMGQ L+I RP+KYPGP+V H  WD+++A++
Sbjct:   32 AAIGAPGAALTAGLAGAAAAADKTKRELFVGNTPPGTSEVVLMEFLNAAMIQV-KQNIEEGNPIMSCRMSAKFAFIELRTAEEANNCLNLNGIPFMGYYLKVGRPTKYAGPITPAKTWQQLTGQAPPADPTAVA------VDPQTKIYRDLYVGNCSPEMTEPALKEFLGSAMEQVGLNQQEGNCILQVRLSGTFAFIEVRSVEEASHMMNLNGIPFMGQFLKIKRPTKYPGPEVPHLNWDDILAKY 271          
BLAST of mRNA_P-wetherbeei_contig6946.1.2 vs. uniprot
Match: A0A448YVH2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YVH2_9STRA)

HSP 1 Score: 256 bits (654), Expect = 1.130e-77
Identity = 142/293 (48.46%), Postives = 189/293 (64.51%), Query Frame = 1
Query:  466 AGMPQQDKVVRELFIGNTPVGTSDFVLLEFLNAAMKQVVNMTTSPGNPIISCRVSSKFAFVELRSIEEASNALNLTGIPFMGQCLNISRPSKYRGPTTPARTWQELTGQRMPAPTGMAGMSGMGVDPTTKVYRELYIGNTTPTMTEGLLGGFIAGTMEKVGLTKGAGSPVVHVRNSGNFAFVEFRSVEEASNALCLSGVPFMGQALRISRPSKYPGPQVAHPTWDEVVARF------SGATGVXXXXXXXXAAVPPTRVIRLSNMVTAEDLGKDENVDELQVRKAGNERKRWG 1326
            A +  Q+K+ RELF+GNTP GTS+ +LL+FLN AM++V  +      PI++CRV+SKFAFVEL S E A+ ALN+ GIPF+G  L +SRPSKY GP  PARTWQ+LTGQ +PA T +            K+ REL++GNTTP MTE +L  F+   ME+VGL    G+P+   R SG FAFVE RS EEA+NAL L+ +PFMG  LR+ RPSK+ GP  +H  W++V+A++      +G T          + V  TRV+ L NM+T EDL  +E  +EL V     E K++G
Sbjct:   64 AHLAAQEKINRELFVGNTPPGTSEMLLLQFLNGAMRRV-KLCGEQETPILNCRVNSKFAFVELVSAEMANKALNMNGIPFLGAVLKVSRPSKYAGPHVPARTWQQLTGQALPAGTVLDAEQ-------EKINRELFVGNTTPEMTERMLREFLGNAMEQVGLNVMPGNPITSCRVSGKFAFVELRSPEEAANALNLNNIPFMGAQLRVGRPSKWSGPPDSHGNWEDVLAKYMSGELQAGNTAPGQGAAAMNSNVKATRVVELKNMLTXEDLSVEEEYNEL-VEDTEQECKQYG 347          
BLAST of mRNA_P-wetherbeei_contig6946.1.2 vs. uniprot
Match: A0A7S2HGX3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HGX3_9STRA)

HSP 1 Score: 254 bits (648), Expect = 3.190e-77
Identity = 136/277 (49.10%), Postives = 182/277 (65.70%), Query Frame = 1
Query:  481 QDKVVRELFIGNTPVGTSDFVLLEFLNAAMKQVVNMTTSPGNPIISCRVSSKFAFVELRSIEEASNALNLTGIPFMGQCLNISRPSKYRGPTTPARTWQELTGQRMPAPTGMAGMSGMGVDPTTKVYRELYIGNTTPTMTEGLLGGFIAGTMEKVGLTKGAGSPVVHVRNSGNFAFVEFRSVEEASNALCLSGVPFMGQALRISRPSKYPGPQVAHPTWDEVVARF-SGATGVXXXXXXXXAAVPP-------TRVIRLSNMVTAEDLGKDENVDEL 1287
            QDKV RELF+GNTP GTS+ +L+ FLN AM++   +  +   PII CR + KFAFVE  SI+EA+ ALNL GIPFMG  L +SRPSKY GP   ++TWQELTGQ +PA  G+  +         KV REL+IGNTTP MTEG+L  F+   ME+VGL+   G+P+   R SG FAF+E RS EEA+NAL L+ +P++G  LR+ RPSKY G Q +H  W++++A++ SG   +        AA  P       TRV+ L NM+T E+L  D++ +E+
Sbjct:   29 QDKVNRELFVGNTPPGTSETLLMAFLNGAMRRT-KICAADATPIIQCRTNQKFAFVECASIQEANLALNLNGIPFMGSSLRVSRPSKYAGPHVASKTWQELTGQALPA--GLTPVPENTSPAEDKVNRELFIGNTTPEMTEGMLTDFLGKAMEQVGLSNQPGNPITACRVSGKFAFIELRSKEEAANALNLNNIPYLGAQLRVGRPSKYTGVQTSHGNWEDILAKYMSGELKLPSQGGAPAAAATPAEDVGSPTRVVELKNMLTKEELTSDQDYEEI 302          
BLAST of mRNA_P-wetherbeei_contig6946.1.2 vs. uniprot
Match: A0A7S4I336_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I336_9STRA)

HSP 1 Score: 253 bits (645), Expect = 4.720e-76
Identity = 146/332 (43.98%), Postives = 207/332 (62.35%), Query Frame = 1
Query:  355 GIPSVAXXXXAAIPSYGGMAAM-----------AAAGYPMNPLMAGGLAGMPQQDKVVRELFIGNTPVGTSDFVLLEFLNAAMKQVVNMTTSPGNPIISCRVSSKFAFVELRSIEEASNALNLTGIPFMGQCLNISRPSKYRGPTTPARTWQELTGQRMPAPTGMAGMSG-MGVDPTTKVYRELYIGNTTPTMTEGLLGGFIAGTMEKVGLTKGAGSPVVHVRNSGNFAFVEFRSVEEASNALCLSGVPFMGQALRISRPSKYPGPQVAHPTWDEVVARF-SGATGVXXXXXXXXAAVPP--------TRVIRLSNMVTAEDLGKDENVDEL 1287
            GIP+V      A+P  GGMAAM           A  G  + P++A   A    QDKV RELF+GNTP GTS+ +L++FL+ AM++   +    G+PI++CRV+ KFAFVE  +++ A+ ALNL GIPF+G CL +SRPSKY GP  P+++WQELTG  +P   G+AG  G +      K+ REL+IGNTTP MTE +L  F+   ME+VGL+K  G+P+V  R SG FAF+E R+ +EA++AL L+ +P++G  LR+ RPSKY GP+  H  W++++A++ SG   +        AA  P        T V+ L  M+T +DL  D+   E+
Sbjct:   36 GIPAV--PMGGAMPG-GGMAAMGQVVPLAGAASAIPGLGVPPILA---AQNAAQDKVNRELFVGNTPPGTSEMLLIQFLSGAMRRT-GLCKPSGSPIVTCRVNQKFAFVECATVDCANRALNLNGIPFLGSCLKVSRPSKYAGPFVPSKSWQELTGTALP--NGLAGAGGALAGSAEDKINRELFIGNTTPEMTEQMLSDFLGKAMEQVGLSKAPGNPIVTCRTSGKFAFIELRTTDEAASALNLNNIPYLGAQLRVGRPSKYTGPETPHGNWEDILAKYMSGELQLPSKDGGGGAAPAPAAPHAIDATCVVELCQMLTQQDLENDDEYKEI 358          
BLAST of mRNA_P-wetherbeei_contig6946.1.2 vs. uniprot
Match: A0A7S0G8A8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G8A8_9STRA)

HSP 1 Score: 250 bits (639), Expect = 1.330e-75
Identity = 138/295 (46.78%), Postives = 183/295 (62.03%), Query Frame = 1
Query:  430 GYPMNPLMAGGLAGMPQQDKVVRELFIGNTPVGTSDFVLLEFLNAAMKQVVNMTTSPGNPIISCRVSSKFAFVELRSIEEASNALNLTGIPFMGQCLNISRPSKYRGPTTPARTWQELTGQRMPAPTGMAGMSGMGVDPTTKVYRELYIGNTTPTMTEGLLGGFIAGTMEKVGLTKGAGSPVVHVRNSGNFAFVEFRSVEEASNALCLSGVPFMGQALRISRPSKYPGPQVAHPTWDEVVARF---------SGATGVXXXXXXXXAAVPPTRVIRLSNMVTAEDLGKDENVDEL 1287
            G  MN +MA  +     QDKV+RELF+GNTP GTS+ +L EFLN AM++  N+      P+I CRVS+KFAF+EL S++  + ALNL GIPFMG  L +SRPSKY GP   A +WQELTGQ +P+       S    D   KV REL+IGNTTP MTE +L  F+   ME+VGLT   G+P+   R SG FAF+E RS +E +NAL L+ +P+MG  LR+ RPSKY G Q  H  W++++A++          G  G             PT+V+ L NM+T E+L  DE+ +E+
Sbjct:   87 GMMMNMMMATPMTN--PQDKVMRELFVGNTPQGTSEILLREFLNGAMRRT-NLCGPTDTPVIQCRVSAKFAFIELSSVDVTNIALNLNGIPFMGMSLKVSRPSKYSGPHVAASSWQELTGQPLPSNIAPISDSKAAED---KVNRELFIGNTTPEMTEQMLKDFLGKAMEQVGLTTQPGNPINACRVSGKFAFIELRSKDETANALNLNNIPYMGAQLRVGRPSKYIGEQTPHGNWEDILAKYMSGELKLPSEGGAGAAAVVNNVTPTATPTKVVVLENMLTPEELVSDEDYNEI 375          
BLAST of mRNA_P-wetherbeei_contig6946.1.2 vs. uniprot
Match: A0A7S4RDP7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RDP7_9STRA)

HSP 1 Score: 250 bits (639), Expect = 4.120e-75
Identity = 136/290 (46.90%), Postives = 180/290 (62.07%), Query Frame = 1
Query:  442 NPLMAGGLAGMPQQDKVVRELFIGNTPVGTSDFVLLEFLNAAMKQVVNMTTSPGNPIISCRVSSKFAFVELRSIEEASNALNLTGIPFMGQCLNISRPSKYRGPTTPARTWQELTGQRMPAPTGMAGMSGMGVDPTTKVYRELYIGNTTPTMTEGLLGGFIAGTMEKVGLTKGAGSPVVHVRNSGNFAFVEFRSVEEASNALCLSGVPFMGQALRISRPSKYPGPQVAHPTWDEVVARFSGATGVXXXXXXXXAAVP--------PTRVIRLSNMVTAEDLGKDENVDEL 1287
            NPLM    A    QDKV RELF+GNTP GTS+ +L +FLN AM++   +  +   PII CR + KFAFVE  SI +A+ ALNL GIPFMG  L +SRPSKY GP  P++TWQELTGQ +P   G+  +         KV REL+IGNTTP MTE +L  F+   ME+VGL    G+P+   R SG FAF+E RS EE +NAL L+ +P++G  LR+ RPSKY G Q  H  W++++A++              AA P        PTRV+ L NM+T ++L  D++ +E+
Sbjct:   82 NPLMVATAA----QDKVNRELFVGNTPPGTSEALLTQFLNGAMRRT-KLCAADAMPIIQCRTNQKFAFVECASIADANLALNLNGIPFMGSSLRVSRPSKYAGPHVPSKTWQELTGQTLPV--GLTPVPENTSPAEDKVNRELFIGNTTPEMTESMLTDFLGKAMEQVGLATHPGNPITACRVSGKFAFIELRSKEETANALNLNNIPYLGAQLRVGRPSKYVGAQTPHGNWEDILAKYMSGELKLPSQGGAPAAAPAPAANTGVPTRVVELKNMLTMDELTSDQDYEEI 364          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6946.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2V6E6_9STRA1.200e-8852.24Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A7S3XTW3_HETAK5.240e-8849.84Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835ZHK3_9STRA1.190e-8650.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4D6W7_HETAK2.510e-8649.84Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S4D6X1_HETAK1.270e-8256.68Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A448YVH2_9STRA1.130e-7748.46Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2HGX3_9STRA3.190e-7749.10Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S4I336_9STRA4.720e-7643.98Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S0G8A8_9STRA1.330e-7546.78Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S4RDP7_9STRA4.120e-7546.90Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6946contigP-wetherbeei_contig6946:81..2598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog159749.K0SQC2
PFAMsRRM_1
Model size1326
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.51e-66
EggNOG OGsKOG0120@1|root,KOG0120@2759|Eukaryota,2XDBR@2836|Bacillariophyta
DescriptionRNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Cds size1326
COG categoryA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186947.7464378-CDS-P-wetherbeei_contig6946:80..3291683186947.7464378-CDS-P-wetherbeei_contig6946:80..329Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6946 81..329 -
1683186947.758975-CDS-P-wetherbeei_contig6946:670..9121683186947.758975-CDS-P-wetherbeei_contig6946:670..912Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6946 671..912 -
1683186947.7675874-CDS-P-wetherbeei_contig6946:1011..12671683186947.7675874-CDS-P-wetherbeei_contig6946:1011..1267Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6946 1012..1267 -
1683186947.77664-CDS-P-wetherbeei_contig6946:2019..25981683186947.77664-CDS-P-wetherbeei_contig6946:2019..2598Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6946 2020..2598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6946.1.2prot_P-wetherbeei_contig6946.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6946 81..2598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6946.1.2

>prot_P-wetherbeei_contig6946.1.2 ID=prot_P-wetherbeei_contig6946.1.2|Name=mRNA_P-wetherbeei_contig6946.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=442bp
MPERSRSSSPAEVANDEKTDGSPRKGSKRRDRSRERSRERSRERSRERSR
RSRSRSGSSDRRRRTSHRDRSGERSRDRRERSRSRDRSPRTERPARSSRF
NVAPLPAATAPVPGATAYGIPSVAPAVPAAIPSYGGMAAMAAAGYPMNPL
MAGGLAGMPQQDKVVRELFIGNTPVGTSDFVLLEFLNAAMKQVVNMTTSP
GNPIISCRVSSKFAFVELRSIEEASNALNLTGIPFMGQCLNISRPSKYRG
PTTPARTWQELTGQRMPAPTGMAGMSGMGVDPTTKVYRELYIGNTTPTMT
EGLLGGFIAGTMEKVGLTKGAGSPVVHVRNSGNFAFVEFRSVEEASNALC
LSGVPFMGQALRISRPSKYPGPQVAHPTWDEVVARFSGATGVGGVGGVGG
AAVPPTRVIRLSNMVTAEDLGKDENVDELQVRKAGNERKRWG
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mRNA from alignment at P-wetherbeei_contig6946:81..2598-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6946.1.2 ID=mRNA_P-wetherbeei_contig6946.1.2|Name=mRNA_P-wetherbeei_contig6946.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2518bp|location=Sequence derived from alignment at P-wetherbeei_contig6946:81..2598- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCGAACGAAGCCGCTCTTCTTCTCCGGCGGAGGTGGCCAACGATGA AAAAACGGATGGCTCGCCTCGCAAGGGAAGCAAGCGACGCGACCGCAGCC GCGAGCGAAGCCGCGAGCGAAGCCGCGAGCGAAGCCGCGAGCGTAGCCGT CGCAGCCGGAGCCGCTCGGGCAGCAGCGATCGGCGGCGGCGCACGAGCCA CCGTGATCGCTCCGGCGAGCGGAGCCGCGACCGACGTGAGCGAAGCCGAA GCCGCGACCGCTCGCCGCGCACGGAGCGCCCGGCGCGCAGCTCCAGGTTC AACGTGGCACCGCTGCCGGCGGCAACTGCGCCCGTTCCGGGCGCCACGGC TTACGGGATCCCGAGCGTTGCGCCGGCTGTGCCTGCCGCGATCCCGAGCT ACGGCGGCATGGCGGCGATGGCGGCGGCGGGCTACCCCATGAACCCGCTC ATGGCGGGTGGCCTGGCGGGCATGCCGCAGCAGGACAAGGTGGTGCGGGA GCTCTTCATCGGCAACACGCCCGTCGGGACCTCGGACTTCGTCTTGCTGG AGTTCCTCAACGCCGCCATGAAGCAGGTTGTCTTTTCTTCTTCTGCGAGT TTTCTGCGCAGAGAACAACCTCTTCGTTGACTTCGGCCTGGTGCTTTTTG CGGCAAGGACAGATGCGGTTCAGCCGCTACGCAAAATCTAACCGTGCGCT GCCTGGCCGTTTTTTTGTCTCCTATTGTTGCTGTTGTTGCTGTTGCTGTC CTTTTGCCGTTGCTGCTGTCATTGCCGCCACTGCCGCCCGTCATTGCCGC TGCTGCCGCTCGCGTTTCTTGCTATTTGCCGTTCGTGTTCGTTGCCTTTG CTGCCCGTGTTTTTTCCCGTGTTCGTCCGTGTCATTTGGTCCCTTAAATC GCCCCGTCCACGTCATTGGTCGTTATTCTCTCTCGCCATCGCTGCCGCCG TGTTTCTTCCCTGGTGTTGCGGTGGCCCTTGGCCGCGGCAATGGAAATTG CGTCATCCTGTGGCGGGCCAGCTGGTGGCGGCAGCAACTCCGACAGCAGT AGGGCCGCTGCTGGAGCTGTGGGCAACGGCTGGACCCGCTGCGCTCCCTT CGTAGCCAATACATGCCTCGCGGCGCAAAAATTATCCCGATCTCGTGCCA CCAGCTTGGCAGGCGTCGGACGAAGAGGCGGCGCTGCCGAGAACAGCCGA CACATCCGCAGCAACTAACTTCTTTTCCATCTTTCTTGTTCCTTTTTCTT TTTTGATCCAAGGAAAGAACCTCCCAAAACTCCGCTCCTTTCTTCAACCC AAACGAAAACGAAACGGAACAAACTAAATAGGTCAACATGACGACGTCGC CAGGCAACCCGATCATAAGCTGCCGCGTCAGCAGCAAGTTCGCTTTCGTG GAGCTCCGCTCCATCGAAGAAGCGTCGAACGCGTTGAACCTTACTGGCAT CCCATTCATGGGGCAGTGCCTCAACATCAGCCGCCCCTCCAAATACCGCG GCCCCACCACGCCGGCGCGCACCTGGCAAGAGCTCACGGGGCAACGCATG CCCGCGCCCACCGGCATGGCCGGAATGAGCGGCATGGGTATGGGCAGCGG CATAGGAATGGGAATGGGCGGCGGCGGCGCGATGGGAATGGGTGGCGGCG GGATGGGCGGGATGGGCGGCGGCAGCGGTGCGGCAGGAGTAGACCCGACG ACGAAGGTGTATCGGGAGCTGTACATTGGCAACACGACGCCGACGATGAC GGAGGGGCTACTGGGCGGTTTTATCGCGGGCACAATGGAAAAGGTGGGGC TGACGAAGGGTGCTGGCAGCCCCGTGGTGCACGTGCGCAACAGCGGCAAC TTCGCTTTCGTGGAGTTCCGCTCCGTGGAGGAGGCATCCAACGCCCTTTG CCTCTCGGGCGTGCCCTTCATGGGGCAGGTGCGTCGGTTGCGGCAGAGGA ATAGTGATCTGTTTTGTTGGTTACTAGTTTAGTCTCGTCGGATCTTGGTT GCGTTTCCTTTCCGTTGGCCAGCTTGAAAACTGCATTAACTGTGCCCGTA GCGTTTGCACTTGCTGCGGCATTCTGCCATTGATCGTTCCGATCGCTCAT TATTTCGCCGTTACGATTGCACGGCTGCTCCACCAATCATTATTATTTTA GCGAGATGCGGTGGCATCGGTCTTAACGACGTAGCAAGCCGCCTCCGACC GAACCGTCGCACAAGACTCAAAAGCCGCATCATCCCCATTCGTTCTCTTT TTCTTTGACGCCGCATCAGGCGCTGCGCATCAGCCGGCCGTCCAAGTACC CGGGCCCCCAGGTGGCGCACCCCACCTGGGACGAGGTGGTCGCCCGCTTT TCCGGCGCCACAGGCGTCGGTGGCGTCGGCGGCGTTGGCGGGGCGGCGGT GCCGCCGACGCGCGTGATCCGGCTGTCCAATATGGTGACGGCGGAGGACC TCGGCAAGGATGAAAACGTCGACGAGCTGCAGGTTAGAAAGGCGGGAAAC GAAAGAAAGCGTTGGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6946:81..2598-

>mRNA_P-wetherbeei_contig6946.1.2 ID=mRNA_P-wetherbeei_contig6946.1.2|Name=mRNA_P-wetherbeei_contig6946.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1326bp|location=Sequence derived from alignment at P-wetherbeei_contig6946:81..2598- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCGAACGAAGCCGCTCTTCTTCTCCGGCGGAGGTGGCCAACGATGA
AAAAACGGATGGCTCGCCTCGCAAGGGAAGCAAGCGACGCGACCGCAGCC
GCGAGCGAAGCCGCGAGCGAAGCCGCGAGCGAAGCCGCGAGCGTAGCCGT
CGCAGCCGGAGCCGCTCGGGCAGCAGCGATCGGCGGCGGCGCACGAGCCA
CCGTGATCGCTCCGGCGAGCGGAGCCGCGACCGACGTGAGCGAAGCCGAA
GCCGCGACCGCTCGCCGCGCACGGAGCGCCCGGCGCGCAGCTCCAGGTTC
AACGTGGCACCGCTGCCGGCGGCAACTGCGCCCGTTCCGGGCGCCACGGC
TTACGGGATCCCGAGCGTTGCGCCGGCTGTGCCTGCCGCGATCCCGAGCT
ACGGCGGCATGGCGGCGATGGCGGCGGCGGGCTACCCCATGAACCCGCTC
ATGGCGGGTGGCCTGGCGGGCATGCCGCAGCAGGACAAGGTGGTGCGGGA
GCTCTTCATCGGCAACACGCCCGTCGGGACCTCGGACTTCGTCTTGCTGG
AGTTCCTCAACGCCGCCATGAAGCAGGTTGTCAACATGACGACGTCGCCA
GGCAACCCGATCATAAGCTGCCGCGTCAGCAGCAAGTTCGCTTTCGTGGA
GCTCCGCTCCATCGAAGAAGCGTCGAACGCGTTGAACCTTACTGGCATCC
CATTCATGGGGCAGTGCCTCAACATCAGCCGCCCCTCCAAATACCGCGGC
CCCACCACGCCGGCGCGCACCTGGCAAGAGCTCACGGGGCAACGCATGCC
CGCGCCCACCGGCATGGCCGGAATGAGCGGCATGGGAGTAGACCCGACGA
CGAAGGTGTATCGGGAGCTGTACATTGGCAACACGACGCCGACGATGACG
GAGGGGCTACTGGGCGGTTTTATCGCGGGCACAATGGAAAAGGTGGGGCT
GACGAAGGGTGCTGGCAGCCCCGTGGTGCACGTGCGCAACAGCGGCAACT
TCGCTTTCGTGGAGTTCCGCTCCGTGGAGGAGGCATCCAACGCCCTTTGC
CTCTCGGGCGTGCCCTTCATGGGGCAGGCGCTGCGCATCAGCCGGCCGTC
CAAGTACCCGGGCCCCCAGGTGGCGCACCCCACCTGGGACGAGGTGGTCG
CCCGCTTTTCCGGCGCCACAGGCGTCGGTGGCGTCGGCGGCGTTGGCGGG
GCGGCGGTGCCGCCGACGCGCGTGATCCGGCTGTCCAATATGGTGACGGC
GGAGGACCTCGGCAAGGATGAAAACGTCGACGAGCTGCAGGTTAGAAAGG
CGGGAAACGAAAGAAAGCGTTGGGGC
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