mRNA_P-wetherbeei_contig6940.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6940.1.1
Unique NamemRNA_P-wetherbeei_contig6940.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6940.1.1 vs. uniprot
Match: D8LLG8_ECTSI (Short-chain dehydrogenase/reductase SDR n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLG8_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 5.680e-40
Identity = 137/390 (35.13%), Postives = 177/390 (45.38%), Query Frame = 3
Query:  156 NVVITGGNRGLGYALADEMLRRG-HRVVLGCRDVALGREAAATLARAHVVQKGRP-SPVAVK-------LDVTDGVSVAGFFEEAILSQGGGRVDVLFNNAAVCFEGRD-----------KGTFERTFATNFFGALRMMNACVEATQWHS----------------NDGEEAGRQSIKGCHASISNVSSGDGELCYLSSALRKRFEEAASLEDVTAAVNDLLTDFDER------------------------QEHAFGPTPAYSVSKAALNAAVRLAGPAL------------------LTRRGVAVTAVCPGDVNTRMCSAVAPEASPAVPVSAXXXXXXXXXXXXGKAASAGVLSAAQAARFVADVGLRPTV-YPPGRFYRFGREIPW 1088
            NV++TG NRGLG+A+AD ML+ G +RVVL CR+   GR+A   L      ++ R    +A         LDVT   SV  F E+ +    GGRVD+LFNNA VCF  +D            G    T A NFFGAL ++ ACV A Q  +                ++G  +   S+K    ++  +SSGDGELC+L S  R    EA SLEDV + ++DLL    +                         +E AFGPTPAYS+SKAA+NAAVR   P +                  +   GV + AVCPGDV TRM S                           + A    +S  +AA  V D+ L      P GRFYR G EI W
Sbjct:   55 NVIVTGANRGLGFAIADRMLKLGSYRVVLACRNEQEGRDALERLRGKQQQRRQRQYGTIATNFLASFFPLDVTCPRSVEVFREDCVNGHLGGRVDILFNNAGVCFPEQDGNGPQNNRAAAAGILRETLAVNFFGALEVVEACVPALQAAAPMVARKEKKKAALMLEDNGATSTMTSLK--PPTVVWISSGDGELCFLGSKWRGLLAEAQSLEDVKSPLSDLLATATDTITTTSKQNSTAPAGSQQEGEQGQVEEMAFGPTPAYSLSKAAVNAAVRTWAPCIQAPTVPAEAPENTKSRTGVRGGGVRLVAVCPGDVLTRMTSKE-------------------------EMARGDAVSPEEAAVEVVDLALSSANDIPAGRFYRHGEEIGW 417          
BLAST of mRNA_P-wetherbeei_contig6940.1.1 vs. uniprot
Match: A0A7S2XFG2_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XFG2_9EUKA)

HSP 1 Score: 142 bits (358), Expect = 1.470e-35
Identity = 100/242 (41.32%), Postives = 138/242 (57.02%), Query Frame = 3
Query:  162 VITGGNRGLGYALADEMLRRGHRVVLGCRDVALGREAAATLARAHVVQKGRPSPVAVKLDVTDGVSVAGFFEEAILSQGGGRVDVLFNNAAVCFEGRDKGTFERTFATNFFGALRMMNACVEATQWHSNDGEEAGRQSIKGCHASISNVSSGDGELCYLSSALRKRFEEAASLEDVTAAVN---DLLTDFDERQEHAFGPTPAYSVSKAALNAAVRLAGPALLTRRGVAVTAVCPGDVNTRM 878
            ++TGG RGLGYA+A+ M RRG+ VV+  RD  +G EAA  + R+ +  +G  +    KLD+ +  S+  F +    +  GG VDVLFNNAAVC EG +      +F  N  G L ++   +E  Q   +D  E  R+S + C   + NVSS +GEL YL S+L +    A++ +D  A +     +  DFD   E+AFGPTP YSVSKAAL A  ++        R  AV AVCPGDV+T M
Sbjct:   24 IVTGGTRGLGYAIAERMARRGYDVVIAGRDENIGNEAATNIQRS-ISTRGVGTVSYRKLDLENAESINNFRQWCRRNVEGG-VDVLFNNAAVCLEGSNVEVARSSFQINVIGPLALVEGLME--QQKMDDRRER-RKSTQRC---VINVSSSEGELGYLHSSLAEALLTASASDDPQAVIRVLESIQNDFDPLLEYAFGPTPFYSVSKAALIALTQVLARRDPDGRSFAVHAVCPGDVSTSM 257          
BLAST of mRNA_P-wetherbeei_contig6940.1.1 vs. uniprot
Match: A0A835YS44_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS44_9STRA)

HSP 1 Score: 133 bits (335), Expect = 5.920e-32
Identity = 115/332 (34.64%), Postives = 159/332 (47.89%), Query Frame = 3
Query:  162 VITGGNRGLGYALADEMLRRGHRVVLGCRDVALGREAAATLARAHVVQKGRPSPVAVKLDVTDGVSVAGFFEEAILSQGGGRVDVLFNNAAVCFEGRDKGTFERTFATNFFGALRMMNACVEATQWHSNDGEEAGRQSIKGCHASISNVSSGDGELCYLSSALRKRFEEAASLEDVTAAVNDLL--TDFDERQEHAFGPTPAYSVSKAALNAAVRL----------------AGPALL-----TRRGVAVTAVCPGDVNTRMCSAVAPEASPAVPVSAXXXXXXXXXXXXGKAASAGVLSAAQAARFVADVGLRPTVYPPGRFYRFGREIPW 1088
            ++TG +RGLG A+A  ++++ + V+L  R  A G +AA+ L+ AH   +G       +LDV+   S+  F  + + +   G +  +FNNA VC  G D  T + +   NF+G LR+M AC+          +E G          + NVSSGDGEL +L+S + +   +A +++DV AA +D+L     D   E AFG TPAYSVSKA LNAAVR                 AG A       T +  AV AVCPGDV T M S                           +A   GVLSA +AA  V  +         G FYR+G  IPW
Sbjct:   50 LVTGASRGLGLAVATLLVQQDYHVILTARSEADGLKAASDLS-AHC--QGTGEITFRQLDVSSPDSIKHFATQCLPTLPSGSLTAVFNNAGVCLPGADIATLQYSLGVNFYGPLRVMEACLPFM-------DEEGV---------VVNVSSGDGELLWLNSDIAEALRQAQTVQDVRAAADDILQRAALDPGAELAFGATPAYSVSKALLNAAVRCRHGIPYAPDPAEGALNAGRASSRGGGSTAQRPAVIAVCPGDVRTLMASEE-------------------------EAQREGVLSALEAAAHVVGLATWRERTAGGLFYRYGAVIPW 337          
BLAST of mRNA_P-wetherbeei_contig6940.1.1 vs. uniprot
Match: R1DJ38_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DJ38_EMIHU)

HSP 1 Score: 120 bits (301), Expect = 5.590e-26
Identity = 99/266 (37.22%), Postives = 126/266 (47.37%), Query Frame = 3
Query:   99 PRRARLRPENGRKCYVVALNVVITGGNRGLGYALADEMLRRGHRVVLGCRDVALGREAAATLARAHVVQKGRPSPVAVKLDVTDGVSVAGFFEEAILSQGGGRVDVLFNNAAVCFEGRDKGTFERTFATNFFGALRMMNACVEATQWHSNDGEEAGRQSIKGCHASISNVSSGDGELCYLSSALRKRFEEAASLEDVTAAVNDLLTDFD----ERQEHAFGPTPAYSVSKAALNAAVRLAGPALLTRRGVAVTAVCPGDVNTRMCS 884
            P   R   +  R+  ++    ++TG NRG+G A A  +   G  VVL CRD +  REAAA L+    V+     P A   D     S +     A  S    RVD+L NNAAVC  G  +    R+F TN      +  A +                 ++    ++ +VSSGDGEL +LSS L  R   AAS  ++   +  L    D      +  A GPTPAYSVSKAALN   RL G AL    GV V A CPGDV TRMCS
Sbjct:  276 PNPVRQSRQRSRQRMLLDNTALVTGANRGIGLATAGRLAELGASVVLACRDESACREAAAALS----VRGLAAEPYAASFDAECPRSTSAL-AAACASL---RVDLLVNNAAVCEPGWGRDVALRSFRTNVLAPATLTRAVLPGM--------------LRRRRGAVLHVSSGDGELVFLSSDLAPRLAGAASERELLRLLARLSRGRDGFRFPDRPPAHGPTPAYSVSKAALNRHTRLVGDALPRDGGVWVGAACPGDVRTRMCS 519          
BLAST of mRNA_P-wetherbeei_contig6940.1.1 vs. uniprot
Match: R1EIL5_EMIHU (DNA ligase (ATP) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EIL5_EMIHU)

HSP 1 Score: 119 bits (298), Expect = 3.070e-25
Identity = 96/245 (39.18%), Postives = 119/245 (48.57%), Query Frame = 3
Query:  162 VITGGNRGLGYALADEMLRRGHRVVLGCRDVALGREAAATLARAHVVQKGRPSPVAVKLDVTDGVSVAGFFEEAILSQGGGRVDVLFNNAAVCFEGRDKGTFERTFATNFFGALRMMNACVEATQWHSNDGEEAGRQSIKGCHASISNVSSGDGELCYLSSALRKRFEEAASLEDVTAAVNDLLTDFD----ERQEHAFGPTPAYSVSKAALNAAVRLAGPALLTRRGVAVTAVCPGDVNTRMCS 884
            ++TG NRG+G A A  +   G  VVL CRD +  REAAA L+    V+     P A   D     S +     A  S    RVD+L NNAAVC  G  +    R+F TN      +  A +                 ++    ++ +VSSGDGEL +LSS L  R   AAS  ++   +  L    D      +  A GPTPAYSVSKAALN   RL G AL    GV V A CPGDV TRMCS
Sbjct:    8 LVTGANRGIGLATAGRLAELGASVVLACRDESACREAAAALS----VRGLAAEPYAASFDAECPRSTSAL-AAACASL---RVDLLVNNAAVCEPGWGRDVALRSFRTNVLAPATLTRAVLPGM--------------LRRRRGAVLHVSSGDGELVFLSSDLAPRLAGAASERELLRLLARLSRGRDGFRFPDRPPAHGPTPAYSVSKAALNRHTRLVGDALPRDGGVWVGAACPGDVRTRMCS 230          
BLAST of mRNA_P-wetherbeei_contig6940.1.1 vs. uniprot
Match: A0A7S0NQP3_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NQP3_9EUKA)

HSP 1 Score: 112 bits (279), Expect = 1.380e-24
Identity = 101/249 (40.56%), Postives = 123/249 (49.40%), Query Frame = 3
Query:  162 VITGGNRGLGYALADEMLRRGHRVVLGCRDVALGREAAATLARAHVVQKGRPSPVAVKLDVTDGVSVAGFFEEAILSQGGGRVDVLFNNAAVCFEGRDKGTFERTFATNFFGALRMMNACVEATQWHSNDGEEAGRQSIKGCHASISNVSSGDGELCYLSSALRKRFEEAASLE---DVTAAVNDLLTDFDERQEHAFGPTPAYSVSKAALNAAVRL-----AGPALLTRRGVAVTAVCPGDVNTRMCS 884
            V+TG NRGLG ALA  +   G  V+L  RD       AATLA   +     P+     LDV+D  SV  F E    SQ     +VL NNAAVC  G  +    R+  TN  G L +   C E        G  A R++ +     + NVSSGDGEL YL+SAL+  F  A+S+     + A V            H+  PTPAYSVSKAALNA  R+     AG        V   AVCPGDV+TRMCS
Sbjct:    6 VVTGANRGLGAALARCLAMSGCSVLLTGRDAPAVGRLAATLASTGLPAFAYPAA----LDVSDMRSVRNFAEHCARSQA--VPEVLINNAAVCERGWTRQVVRRSLKTNVIGPLAL---CREL----GAVGCAAPRRARR---LRVLNVSSGDGELVYLNSALQDEFRRASSVRTLLQLLARVTPPRQTIGGAPAHS--PTPAYSVSKAALNALTRILAGEHAGGTSELCASVWFAAVCPGDVSTRMCS 236          
BLAST of mRNA_P-wetherbeei_contig6940.1.1 vs. uniprot
Match: A0A7S2ZT12_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZT12_9RHOD)

HSP 1 Score: 105 bits (262), Expect = 2.550e-22
Identity = 92/245 (37.55%), Postives = 118/245 (48.16%), Query Frame = 3
Query:  162 VITGGNRGLGYALADEMLRRGHRVVLGCRDVALGREAAATLARAHVVQKGRPSPVAVKLDVTDGVSVAGFFEEAILSQGGGRVDVLFNNAAVCFEGRDKGTFERTFATNFFGALRMMNACVEATQWHSNDGEEAGRQSIKGCHASISNVSSGDGELCYLSSALRKRFEEAASLEDVTAAVNDLLTDFDER------QEHAFGPTPAYSVSKAALNAAVRLAGPALLTRRGVAVTAVCPGDVNTRM 878
            ++TG  RGLG A+ +E+    H V+L  RDV  G   A +  R     KG      ++LDV D  S        ++    G +DV+ NNAAVC E             NFFGA+R + AC+   Q  + D             A I NVSSGDGE  + S+A+R+RFE   S    T A+ D L DF E+      +E   G  P Y VSK ALN   RL    L    G+ V +VCPGDV TRM
Sbjct:    9 LVTGATRGLGLAIVEELAGLNHHVLLTGRDVEKGYVEAGSFQR-----KGFDVRF-LELDVCDERSAENL--ALVVRDQYGALDVIVNNAAVCLEEWSSSALTNCLEVNFFGAVRTV-ACLG--QLLAKD-------------ACILNVSSGDGESVWFSTAVRERFEGVQS----TNALLDALRDFAEKADAVPPEEVVHGEQPTYKVSKFALNCYTRLLHNDL-NESGIRVLSVCPGDVRTRM 224          
BLAST of mRNA_P-wetherbeei_contig6940.1.1 vs. uniprot
Match: UPI001CCE85C7 (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Hyalangium sp. H56D21 TaxID=2861190 RepID=UPI001CCE85C7)

HSP 1 Score: 101 bits (251), Expect = 8.420e-21
Identity = 89/247 (36.03%), Postives = 116/247 (46.96%), Query Frame = 3
Query:  159 VVITGGNRGLGYALADEMLRRGHRVVLGCRDVALGREAAATLARAHVVQKGRPSPVAVKLDVTDGVSVAGFFEEAILSQGGGRVDVLFNNAAVCFEGRDKGTFERTFATNFFGALRMMNACVEATQWHSNDGEEAGRQSIKGCHASISNVSSGDGELCYLSSALRKRFEEAASLEDVTAAVNDLLTDFDERQEHAFG-PTPAYSVSKAALNAAVRLAGPALLTRRGVAVTAVCPGDVNTRMCSAVAP 896
            V++TGGNRG+G+ +  ++ R G RV+L  RD A G +AA TL    +     P      LDV    S+     +  L + G R+  L NNAA+  +G D    E+T   NFFGA  +               E  G    K  H  +  VSS  GEL  L   +R+RF+   S E + A V + + D    Q    G P  AY VSKAALNA  R        R+ + V AVCPG V TRM    AP
Sbjct:    8 VLVTGGNRGIGFEVCRQLARAGMRVLLTARDTAGGEQAARTLRTESLDVVFEP------LDVASQESILTLATK--LERQGQRLSALVNNAAITMDGFDARVAEQTTVVNFFGAWLVA--------------ERLGLLLEK--HGRLVMVSSDGGELGRLCPEIRRRFDPPPSKETLAALVREFIEDVRSGQFARKGWPRSAYRVSKAALNALTRRLAEEFKERQ-LLVNAVCPGWVRTRMGGPSAP 229          
BLAST of mRNA_P-wetherbeei_contig6940.1.1 vs. uniprot
Match: K8Z388_NANGC (Short-chain dehydrogenase reductase family protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8Z388_NANGC)

HSP 1 Score: 102 bits (253), Expect = 1.140e-20
Identity = 100/344 (29.07%), Postives = 145/344 (42.15%), Query Frame = 3
Query:  141 YVVALNVVITGGNRGLGYALADEMLRRGHRVVLGCRDVALGREAAATLARAHVVQKGRPSPVAVKLDVTDGVSVAGFFEEAILSQG--GGRVDVLFNNAAVCFEGRD-----------KGTFERTFATNFFGALRMMNACVEATQWHSNDGEEAGRQSIKGCHASISNVSSGDGELCYLSSALRKRFEEAASLEDVTAAVNDLLTDFDER----QEHAFGPT--PAYSVSKAALNAAVRLAGP---ALLTR------RGVAVTAVCPGDVNTRMCSAVAPEASPAVPVSAXXXXXXXXXXXXGKAASAGVLSAAQAARFVADVGLRPTVYPPGRFYRFGREIPW 1088
            +   +  V+TGGNRGLG A++D +   G+ V+L  R+   G+   A + R H    G+     + LDV++  S+  F ++   ++   GG   VL NNA +C    D           +G +   F  N +  + ++ AC+     H             GC   I N+SSGDGEL YL S + KR +   SL ++    +D +    +     +     P   PAYS SKA LNAA +L      AL+++          + A+CPGDVNT MC                            + A+   LS  QAA  V    L       G FYR  R IPW
Sbjct:   18 FTPRITAVVTGGNRGLGLAISDLLAEVGYHVILTARNAEEGQARVADIQRRH----GQNRCEFMALDVSEPKSIKAFVDQMKRNEEMRGGVPHVLINNAGICVRDEDAAAAVEGSGGREGVYRSVFDINTWAPVALIEACLPGMCKHGF-----------GC---IVNISSGDGELAYLHSEVAKRLKRVRSLAELKQ-FSDWVAQMQQEGPWPRGEGLAPVSWPAYSFSKAVLNAATQLLQSRVDALISKDMKVRAHQPRIVAICPGDVNTAMCD---------------------------EHAAHNALSPEQAALDVVWAVLHSKECHGGYFYRARRAIPW 315          
BLAST of mRNA_P-wetherbeei_contig6940.1.1 vs. uniprot
Match: A0A3N5AMK0_9ACTN (NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family) n=3 Tax=unclassified Streptomyces TaxID=2593676 RepID=A0A3N5AMK0_9ACTN)

HSP 1 Score: 99.4 bits (246), Expect = 4.550e-20
Identity = 92/249 (36.95%), Postives = 112/249 (44.98%), Query Frame = 3
Query:  162 VITGGNRGLGYALADEMLRRGHRVVLGCRDVALGREAAATLARAHVVQKGRPSPVAVKLDVTDGVSVAGFFEEAILSQGGG---RVDVLFNNAAVCFE------GRDKGTFERTFATNFFGALRMMNACVEATQWHSNDGEEAGRQSIKGCHASISNVSSGDGELCYLSSALRKRFEEAASLEDVTAAVNDLLTDFDERQEHAFGPTPAYSVSKAALNAAV-RLAGPALLTRRGVAVTAVCPGDVNTRM 878
            V+TGGNRG+GY +  ++  RGH VVLG RD+A GR AAA       V  G     AV+LDV+D  SVA     A+    GG   RVDV+ NNAA+ ++        D G  +R   TN FGA R+  A +   Q              +  H  +  VSS  G L  +S                                   G TPAYSVSKAALNA    LAG   L R  V V A+CPG V T M
Sbjct:   43 VVTGGNRGIGYEVVRQLAARGHHVVLGSRDLAKGRAAAAR------VDPGGERVSAVQLDVSDAASVA-----AMADWVGGNLRRVDVVVNNAAILYDTWAQARSADLGEVQRALDTNLFGAWRVTQALLPLLQ--------------RSPHPRVVMVSSEGGSLQSMS-----------------------------------GGTPAYSVSKAALNALTCLLAGE--LRRHRVLVNAICPGWVATDM 229          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6940.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLG8_ECTSI5.680e-4035.13Short-chain dehydrogenase/reductase SDR n=2 Tax=Ec... [more]
A0A7S2XFG2_9EUKA1.470e-3541.32Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A835YS44_9STRA5.920e-3234.64Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
R1DJ38_EMIHU5.590e-2637.22Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1EIL5_EMIHU3.070e-2539.18DNA ligase (ATP) n=1 Tax=Emiliania huxleyi TaxID=2... [more]
A0A7S0NQP3_9EUKA1.380e-2440.56Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S2ZT12_9RHOD2.550e-2237.55Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
UPI001CCE85C78.420e-2136.03SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
K8Z388_NANGC1.140e-2029.07Short-chain dehydrogenase reductase family protein... [more]
A0A3N5AMK0_9ACTN4.550e-2036.95NAD(P)-dependent dehydrogenase (Short-subunit alco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6940contigP-wetherbeei_contig6940:1575..2992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LLG8
PFAMsadh_short
Model size1252
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00049,RC00397,RC00709
KEGG koko:K07192,ko:K13646
KEGG ReactionR03376,R03380,R04491
KEGG Pathwayko00310,ko00514,ko04910,map00310,map00514,map04910
Hectar predicted targeting categorysignal peptide
Exons2
Evalue6.99e-42
EggNOG OGsCOG1028@1|root,KOG1208@2759|Eukaryota
EC1.14.11.4,2.4.1.50,2.4.1.66
Descriptionoxidation-reduction process
Cds size1089
COG categoryIQ
BRITEko00000,ko00001,ko01000,ko01003,ko03036,ko04131,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186947.376394-UTR-P-wetherbeei_contig6940:1574..15761683186947.376394-UTR-P-wetherbeei_contig6940:1574..1576Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6940 1575..1576 +
1683186947.4088566-UTR-P-wetherbeei_contig6940:2831..29921683186947.4088566-UTR-P-wetherbeei_contig6940:2831..2992Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6940 2832..2992 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186947.3897846-CDS-P-wetherbeei_contig6940:1576..22571683186947.3897846-CDS-P-wetherbeei_contig6940:1576..2257Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6940 1577..2257 +
1683186947.3993535-CDS-P-wetherbeei_contig6940:2423..28311683186947.3993535-CDS-P-wetherbeei_contig6940:2423..2831Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6940 2424..2831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6940.1.1prot_P-wetherbeei_contig6940.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6940 1577..2831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6940.1.1

>prot_P-wetherbeei_contig6940.1.1 ID=prot_P-wetherbeei_contig6940.1.1|Name=mRNA_P-wetherbeei_contig6940.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=363bp
MGAAVAKFLACVVVLLVPPRNARALCCRGGNAPRRARLRPENGRKCYVVA
LNVVITGGNRGLGYALADEMLRRGHRVVLGCRDVALGREAAATLARAHVV
QKGRPSPVAVKLDVTDGVSVAGFFEEAILSQGGGRVDVLFNNAAVCFEGR
DKGTFERTFATNFFGALRMMNACVEATQWHSNDGEEAGRQSIKGCHASIS
NVSSGDGELCYLSSALRKRFEEAASLEDVTAAVNDLLTDFDERQEHAFGP
TPAYSVSKAALNAAVRLAGPALLTRRGVAVTAVCPGDVNTRMCSAVAPEA
SPAVPVSAAAAAVAAAAGEIGKAASAGVLSAAQAARFVADVGLRPTVYPP
GRFYRFGREIPW*
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mRNA from alignment at P-wetherbeei_contig6940:1575..2992+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6940.1.1 ID=mRNA_P-wetherbeei_contig6940.1.1|Name=mRNA_P-wetherbeei_contig6940.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1418bp|location=Sequence derived from alignment at P-wetherbeei_contig6940:1575..2992+ (Phaeothamnion wetherbeei SAG_119_79)
AAATGGGTGCTGCTGTTGCGAAGTTTCTCGCATGCGTCGTCGTCCTCCTC GTGCCGCCACGAAATGCGCGCGCGCTCTGCTGTCGAGGCGGCAATGCGCC TCGCAGAGCAAGATTACGTCCTGAGAATGGCCGGAAATGCTACGTCGTTG CTTTGAACGTCGTCATCACCGGCGGTAACCGCGGCCTCGGCTACGCACTT GCCGACGAGATGCTGCGGCGAGGCCATCGCGTGGTCCTGGGCTGCCGCGA CGTCGCTCTCGGCAGAGAAGCTGCGGCCACACTGGCGAGAGCTCACGTCG TTCAAAAAGGACGACCATCGCCTGTTGCTGTCAAGCTGGACGTGACCGAT GGTGTAAGCGTCGCTGGCTTTTTTGAAGAGGCCATCTTGTCACAAGGTGG CGGACGTGTCGATGTCTTGTTCAACAACGCGGCTGTTTGTTTCGAGGGCA GGGACAAAGGAACGTTTGAACGGACGTTCGCTACAAATTTCTTTGGTGCG CTGCGCATGATGAATGCGTGCGTCGAAGCGACGCAGTGGCACAGCAATGA TGGGGAAGAGGCAGGAAGGCAGAGCATAAAGGGATGTCACGCTTCCATCT CGAATGTCTCGAGCGGCGACGGCGAACTCTGCTACCTGAGCTCTGCTCTG CGCAAGCGATTTGAAGAGGCTGCATCGCTGGAGGTGAGGCTGGCTTTTTC CCGGGTGTGCCGCGTCCTCAGCCTCTTTCTCTCCTCAAGTGGGTCAAAGA CAGGCAGCTCGTACTTCCAATACGGTGCGCTTGTAGAACCGGCAATTTCT TCCTTCTACTGCCGGCTTGGATTTGCATCTCGCCTTTTGAGCGCGGCAGG ATGTGACGGCGGCCGTGAACGACTTACTGACCGACTTCGACGAGCGACAG GAGCACGCCTTCGGGCCAACGCCTGCCTACAGCGTCTCGAAGGCGGCGCT CAACGCGGCGGTGCGCTTGGCGGGGCCGGCGCTGCTGACCCGCCGTGGCG TCGCCGTAACCGCCGTCTGCCCTGGCGACGTCAACACCCGCATGTGCTCT GCAGTGGCGCCTGAGGCTTCTCCTGCAGTACCTGTTTCGGCGGCGGCGGC GGCAGTGGCGGCTGCGGCAGGTGAAATAGGAAAGGCGGCATCGGCTGGCG TCTTGAGCGCGGCGCAGGCGGCCCGGTTCGTGGCAGATGTTGGCCTTCGC CCGACGGTGTATCCACCAGGGCGATTCTACCGCTTCGGCAGAGAGATTCC ATGGTGAAGCAGAGGAGAAAGGAGGAGAGAGAGAGCGGAAAGCTGGCCTG GAAGAGACAAGAGAGGTCCAAGAGAGAACGAAAAAAGAAGGCAGACCTTG GACTGAAACCCTCGAAAACACTTCGAGGACCCAGCACGCCCCCCCAAAAT AAAAATCGATTCATCGTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6940:1575..2992+

>mRNA_P-wetherbeei_contig6940.1.1 ID=mRNA_P-wetherbeei_contig6940.1.1|Name=mRNA_P-wetherbeei_contig6940.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1089bp|location=Sequence derived from alignment at P-wetherbeei_contig6940:1575..2992+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTGCTGCTGTTGCGAAGTTTCTCGCATGCGTCGTCGTCCTCCTCGT
GCCGCCACGAAATGCGCGCGCGCTCTGCTGTCGAGGCGGCAATGCGCCTC
GCAGAGCAAGATTACGTCCTGAGAATGGCCGGAAATGCTACGTCGTTGCT
TTGAACGTCGTCATCACCGGCGGTAACCGCGGCCTCGGCTACGCACTTGC
CGACGAGATGCTGCGGCGAGGCCATCGCGTGGTCCTGGGCTGCCGCGACG
TCGCTCTCGGCAGAGAAGCTGCGGCCACACTGGCGAGAGCTCACGTCGTT
CAAAAAGGACGACCATCGCCTGTTGCTGTCAAGCTGGACGTGACCGATGG
TGTAAGCGTCGCTGGCTTTTTTGAAGAGGCCATCTTGTCACAAGGTGGCG
GACGTGTCGATGTCTTGTTCAACAACGCGGCTGTTTGTTTCGAGGGCAGG
GACAAAGGAACGTTTGAACGGACGTTCGCTACAAATTTCTTTGGTGCGCT
GCGCATGATGAATGCGTGCGTCGAAGCGACGCAGTGGCACAGCAATGATG
GGGAAGAGGCAGGAAGGCAGAGCATAAAGGGATGTCACGCTTCCATCTCG
AATGTCTCGAGCGGCGACGGCGAACTCTGCTACCTGAGCTCTGCTCTGCG
CAAGCGATTTGAAGAGGCTGCATCGCTGGAGGATGTGACGGCGGCCGTGA
ACGACTTACTGACCGACTTCGACGAGCGACAGGAGCACGCCTTCGGGCCA
ACGCCTGCCTACAGCGTCTCGAAGGCGGCGCTCAACGCGGCGGTGCGCTT
GGCGGGGCCGGCGCTGCTGACCCGCCGTGGCGTCGCCGTAACCGCCGTCT
GCCCTGGCGACGTCAACACCCGCATGTGCTCTGCAGTGGCGCCTGAGGCT
TCTCCTGCAGTACCTGTTTCGGCGGCGGCGGCGGCAGTGGCGGCTGCGGC
AGGTGAAATAGGAAAGGCGGCATCGGCTGGCGTCTTGAGCGCGGCGCAGG
CGGCCCGGTTCGTGGCAGATGTTGGCCTTCGCCCGACGGTGTATCCACCA
GGGCGATTCTACCGCTTCGGCAGAGAGATTCCATGGTGA
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