mRNA_P-wetherbeei_contig694.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig694.2.1
Unique NamemRNA_P-wetherbeei_contig694.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig694.2.1 vs. uniprot
Match: A0A835YWW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWW7_9STRA)

HSP 1 Score: 181 bits (459), Expect = 7.790e-46
Identity = 120/321 (37.38%), Postives = 164/321 (51.09%), Query Frame = 1 
Query:  946 WKSKGYWRDEANFAAELFPFLLTHQRRRGLPACWMPRLVDFECAGRSDLSLAISRSGSAQAVARRFRLIYHGEWSYFLDLLKTLRALQGYMRERGGSPGRMPALVELKRAGESRLRDAISRHGGRKALAGRFGLRLAEEKALPMSPMVRSHLQIPMPXXXXXXXXXRMSPWERDLRAAEPTAVAXXXXXXXXXXTVCASAPFVSSRMLYGDFDLDVAVDLFEYVMSRHYRRKLVAPTAAAVAAAPAAAVAGPEQMGGHMDRDGWESLVTMPLRAELIRDGLSDMVLKIDQYGGFESVARRCGLAYDDRVLAELKKVTMSAA 1908
            +K + YWRD  N   ++F FL  +Q   G P  W+PR V+FE AGR+D++ AI+R G    VA R  L+ H +W+YF   L  L+ LQ Y+ + G S G MP L EL   G SRLRD I+  GG K LA +  ++L      P  P  +      M                    A +P A+A             A +  +   +++GDFDLD AVDL EYV S+ YRR+L                A P    G      W+S +TMP R +L+ D  + +VLKI++YGGFE+VARR  L Y+DR L EL+++  SAA
Sbjct:  206 YKPRNYWRDFTNLERQIFDFLRVYQPAIGQPMVWLPRRVEFERAGRADIAQAITRLGGPDMVAGRHALVPHSQWAYFDKHLSVLKDLQSYIEQFGVS-GYMPPLKELDANGFSRLRDGIAWAGGAKLLAAKLDMQLTPRNHRPTEPPPKVKGLTAMV-------------------ATDPEAMAAAA-------AAAADSGQLWGGVVWGDFDLDFAVDLMEYVKSQSYRREL--------------GEASPAVRRGEAF-PWWDSEITMPFRTDLLADRQTKLVLKIEEYGGFENVARRLQLVYEDRDLKELRRLHASAA 484
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BLAST of mRNA_P-wetherbeei_contig694.2.1 vs. uniprot
Match: A0A7S2KN41_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KN41_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.430e-14
Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = 1 
Query: 1030 GLPACWMPRLVDFECAGRSDLSLAISRSGSAQAVARRFRLIYHGEWSYFLDLLKTLRALQGYMR-ERGGSPGRMPALVELKRAGESRLRDAISRHGGRKALAGRFGLRLAE 1359
            G P+ +MPRL DF   GR DL  AI RSG  + +  R  +I + EW YF  L      L+ Y+     G+    P L E+K  G+ RL + I +HGGRK +AGR G++L++
Sbjct:    4 GRPSIFMPRLNDFSAHGRDDLRAAIVRSGGPEVLCERAGMISYREWEYFESLYSLYSGLKAYIDIYHEGNTEVFPPLKEIKSKGQRRLYNLIQKHGGRKIVAGRAGMKLSK 114
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig694.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YWW7_9STRA7.790e-4637.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2KN41_9STRA2.430e-1440.54Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig694contigP-wetherbeei_contig694:4490..6980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G9C9
Model size2142
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons3
Evalue1.42e-26
EggNOG OGs2EVMA@1|root,2SXK1@2759|Eukaryota
Cds size1908
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186947.1871324-UTR-P-wetherbeei_contig694:4489..46871683186947.1871324-UTR-P-wetherbeei_contig694:4489..4687Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig694 4490..4687 -
1683186947.228645-UTR-P-wetherbeei_contig694:6944..69801683186947.228645-UTR-P-wetherbeei_contig694:6944..6980Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig694 6945..6980 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186947.1982613-CDS-P-wetherbeei_contig694:4687..48251683186947.1982613-CDS-P-wetherbeei_contig694:4687..4825Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig694 4688..4825 -
1683186947.2089634-CDS-P-wetherbeei_contig694:5063..64731683186947.2089634-CDS-P-wetherbeei_contig694:5063..6473Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig694 5064..6473 -
1683186947.218895-CDS-P-wetherbeei_contig694:6584..69441683186947.218895-CDS-P-wetherbeei_contig694:6584..6944Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig694 6585..6944 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig694.2.1prot_P-wetherbeei_contig694.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig694 4688..6944 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig694.2.1

>prot_P-wetherbeei_contig694.2.1 ID=prot_P-wetherbeei_contig694.2.1|Name=mRNA_P-wetherbeei_contig694.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=636bp
MRRPRLCAELTALVLSSEKVALAWKHVWHSPSGNPSRSAHRNFEFTLVGV
VTRQPPLIALARAADAVEDVKISTTHTGSPRLRRPRGYWTDIANIRQEIA
AFWQAHGVTCDAVPSETLLQIGGAHGLRHGIATHGGKDEVGAILGVAVIP
SRWKDALQEPVVQRLVRNAALLAAQPADGLRPKPKARRGAGPPLPVQGPS
GGATPLVLAVKARWPSQQRLETARLTRRRLRGGVVGSGRRGRPPSDAASV
AGVAAKASRSAAATAANASAAAAAAAAATMEVPRADPGVFGPALATTTAA
MAAWKSKGYWRDEANFAAELFPFLLTHQRRRGLPACWMPRLVDFECAGRS
DLSLAISRSGSAQAVARRFRLIYHGEWSYFLDLLKTLRALQGYMRERGGS
PGRMPALVELKRAGESRLRDAISRHGGRKALAGRFGLRLAEEKALPMSPM
VRSHLQIPMPPPPRSQQQRRMSPWERDLRAAEPTAVAAAAAAAAASSTVC
ASAPFVSSRMLYGDFDLDVAVDLFEYVMSRHYRRKLVAPTAAAVAAAPAA
AVAGPEQMGGHMDRDGWESLVTMPLRAELIRDGLSDMVLKIDQYGGFESV
ARRCGLAYDDRVLAELKKVTMSAARRSTSNIGGLG*
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mRNA from alignment at P-wetherbeei_contig694:4490..6980-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig694.2.1 ID=mRNA_P-wetherbeei_contig694.2.1|Name=mRNA_P-wetherbeei_contig694.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2491bp|location=Sequence derived from alignment at P-wetherbeei_contig694:4490..6980- (Phaeothamnion wetherbeei SAG_119_79)
AGCAAAACGAGAAGAGGCCGCTACTGGCCGTGCGAAATGCGAAGGCCTCG
GCTTTGCGCCGAACTGACTGCGCTCGTCTTGAGTTCAGAAAAAGTTGCGC
TGGCGTGGAAGCATGTCTGGCATTCTCCAAGCGGCAACCCTTCGCGCTCC
GCGCATCGAAACTTTGAATTTACATTGGTCGGAGTCGTCACTCGACAACC
TCCTTTAATAGCCCTCGCACGTGCCGCCGACGCTGTTGAAGATGTGAAAA
TCTCTACAACGCACACCGGCTCGCCGCGTCTCAGGAGGCCGCGCGGCTAC
TGGACTGATATAGCCAATATTAGGCAGGAGATTGCTGCCTTTTGGCAGGC
TCATGGAGTGACGTGCGACGCGGTGCCGAGCGAGACGCTTCTTCAGGTAA
GGTGCTTCGCATCCTTGGTGAAAGTCGCGTTCCCGTTGCCGCTTTTACTC
CTCGCGAACTTGTGCGCTAACCAAGCGTGGGGTGTTGCATTGCGCCGCGA
CGTGCAGATTGGGGGCGCGCATGGATTGCGACACGGCATTGCGACCCACG
GCGGCAAGGACGAGGTGGGGGCGATACTGGGGGTGGCAGTGATTCCCAGT
CGCTGGAAAGACGCGCTGCAGGAGCCGGTGGTCCAGCGCTTGGTCAGGAA
CGCGGCTTTGCTCGCGGCGCAACCCGCCGATGGCTTGCGACCAAAGCCCA
AGGCACGCCGAGGTGCAGGGCCGCCGCTGCCAGTGCAGGGCCCAAGCGGT
GGCGCCACCCCGCTTGTGCTGGCGGTAAAGGCCCGCTGGCCGTCCCAACA
GCGGCTGGAGACGGCGCGCCTCACGCGGCGGAGGCTTCGCGGCGGCGTCG
TTGGCTCCGGCCGCCGTGGCAGGCCGCCATCTGATGCTGCCAGTGTCGCG
GGCGTTGCCGCAAAAGCTTCCCGCTCTGCTGCCGCCACCGCCGCAAATGC
TTCCGCCGCCGCCGCCGCCGCCGCCGCCGCTACCATGGAGGTTCCGCGTG
CCGACCCGGGCGTGTTTGGGCCGGCTTTGGCCACCACGACGGCGGCGATG
GCCGCTTGGAAGTCGAAGGGCTACTGGAGGGACGAAGCCAATTTCGCGGC
GGAGCTTTTTCCGTTCCTTCTGACGCATCAGCGGCGCCGCGGGCTGCCGG
CATGCTGGATGCCCCGGCTGGTGGACTTTGAATGCGCCGGCCGATCGGAC
CTGTCGCTCGCCATCAGCCGCTCCGGCAGCGCGCAGGCGGTGGCGCGCCG
CTTCCGCCTCATCTACCACGGGGAGTGGTCGTACTTCCTGGACCTCCTGA
AGACGCTGCGGGCGCTGCAGGGCTACATGCGGGAGCGCGGCGGCAGCCCG
GGGCGCATGCCGGCGCTGGTGGAGCTGAAGCGCGCCGGCGAGTCGCGGCT
GCGGGACGCCATCTCGCGCCACGGCGGCCGCAAGGCGCTCGCCGGGCGGT
TCGGCTTGCGGCTGGCAGAGGAGAAGGCGCTGCCGATGTCGCCAATGGTG
CGGTCACACCTACAAATCCCGATGCCGCCGCCACCACGGTCGCAGCAGCA
GCGAAGGATGTCGCCCTGGGAGCGGGACTTGAGGGCAGCCGAGCCCACAG
CGGTGGCAGCGGCGGCGGCGGCTGCAGCGGCATCATCGACTGTCTGTGCA
TCTGCGCCCTTTGTCAGCAGCCGGATGCTGTACGGAGATTTTGACCTCGA
TGTCGCGGTGGACCTCTTCGAGTACGTCATGAGCCGCCATTACCGGCGGA
AGCTCGTGGCGCCCACCGCCGCCGCAGTTGCCGCCGCTCCCGCCGCGGCG
GTCGCCGGGCCGGAACAGATGGGCGGCCACATGGACCGGGACGGCTGGGA
GAGCCTCGTCACCATGCCGCTGCGGGCCGAGCTCATCCGGGACGGTCTCT
CCGACATGGTTCTCAAGGTGTGAGCTGGCGGGGAAGCGGGCTGGTCTGCG
TAATCGGCTCACTCGTTTCTCCCATATGCCAATGGTGGCCTATGCCGCTT
GACGTCCACATGCCGACATCTTGAGAACCTATTGTTGCAGAAGCTAAGGA
ACCTCGCGTCCAATGCGTGCCCGTCATAAACTTGCTCCCGGCTGCCGTTG
CCATCGGCCACTCGTCACTATTGTTTTTCCACCCCGGTTCTGCTTCCGAA
AAAAGATTGACCAGTACGGCGGCTTTGAGAGCGTGGCGCGGCGCTGCGGC
CTGGCGTACGACGACAGGGTCCTCGCGGAGCTGAAAAAGGTCACCATGTC
GGCCGCCCGCCGCTCCACCTCCAACATCGGAGGCCTCGGATAAATGGAAC
AGAGGGCTCTGTGCGTTCATAGCAGGCCTTTAAAAAGGCGGCCCTTTTGT
TATCAGGAGAGATAGGCGGCGGATTTAATCTTAGAGAGGAATTGCAAGAG
GGAGGGTGGATTGGCAATTGGCTGCCCTTGTCTACTTCCTGCCATGTAGA
AAGAAAGAATACGACATAGCATTTCCTCCTTCATAGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig694:4490..6980-

>mRNA_P-wetherbeei_contig694.2.1 ID=mRNA_P-wetherbeei_contig694.2.1|Name=mRNA_P-wetherbeei_contig694.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1908bp|location=Sequence derived from alignment at P-wetherbeei_contig694:4490..6980- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGAAGGCCTCGGCTTTGCGCCGAACTGACTGCGCTCGTCTTGAGTTC
AGAAAAAGTTGCGCTGGCGTGGAAGCATGTCTGGCATTCTCCAAGCGGCA
ACCCTTCGCGCTCCGCGCATCGAAACTTTGAATTTACATTGGTCGGAGTC
GTCACTCGACAACCTCCTTTAATAGCCCTCGCACGTGCCGCCGACGCTGT
TGAAGATGTGAAAATCTCTACAACGCACACCGGCTCGCCGCGTCTCAGGA
GGCCGCGCGGCTACTGGACTGATATAGCCAATATTAGGCAGGAGATTGCT
GCCTTTTGGCAGGCTCATGGAGTGACGTGCGACGCGGTGCCGAGCGAGAC
GCTTCTTCAGATTGGGGGCGCGCATGGATTGCGACACGGCATTGCGACCC
ACGGCGGCAAGGACGAGGTGGGGGCGATACTGGGGGTGGCAGTGATTCCC
AGTCGCTGGAAAGACGCGCTGCAGGAGCCGGTGGTCCAGCGCTTGGTCAG
GAACGCGGCTTTGCTCGCGGCGCAACCCGCCGATGGCTTGCGACCAAAGC
CCAAGGCACGCCGAGGTGCAGGGCCGCCGCTGCCAGTGCAGGGCCCAAGC
GGTGGCGCCACCCCGCTTGTGCTGGCGGTAAAGGCCCGCTGGCCGTCCCA
ACAGCGGCTGGAGACGGCGCGCCTCACGCGGCGGAGGCTTCGCGGCGGCG
TCGTTGGCTCCGGCCGCCGTGGCAGGCCGCCATCTGATGCTGCCAGTGTC
GCGGGCGTTGCCGCAAAAGCTTCCCGCTCTGCTGCCGCCACCGCCGCAAA
TGCTTCCGCCGCCGCCGCCGCCGCCGCCGCCGCTACCATGGAGGTTCCGC
GTGCCGACCCGGGCGTGTTTGGGCCGGCTTTGGCCACCACGACGGCGGCG
ATGGCCGCTTGGAAGTCGAAGGGCTACTGGAGGGACGAAGCCAATTTCGC
GGCGGAGCTTTTTCCGTTCCTTCTGACGCATCAGCGGCGCCGCGGGCTGC
CGGCATGCTGGATGCCCCGGCTGGTGGACTTTGAATGCGCCGGCCGATCG
GACCTGTCGCTCGCCATCAGCCGCTCCGGCAGCGCGCAGGCGGTGGCGCG
CCGCTTCCGCCTCATCTACCACGGGGAGTGGTCGTACTTCCTGGACCTCC
TGAAGACGCTGCGGGCGCTGCAGGGCTACATGCGGGAGCGCGGCGGCAGC
CCGGGGCGCATGCCGGCGCTGGTGGAGCTGAAGCGCGCCGGCGAGTCGCG
GCTGCGGGACGCCATCTCGCGCCACGGCGGCCGCAAGGCGCTCGCCGGGC
GGTTCGGCTTGCGGCTGGCAGAGGAGAAGGCGCTGCCGATGTCGCCAATG
GTGCGGTCACACCTACAAATCCCGATGCCGCCGCCACCACGGTCGCAGCA
GCAGCGAAGGATGTCGCCCTGGGAGCGGGACTTGAGGGCAGCCGAGCCCA
CAGCGGTGGCAGCGGCGGCGGCGGCTGCAGCGGCATCATCGACTGTCTGT
GCATCTGCGCCCTTTGTCAGCAGCCGGATGCTGTACGGAGATTTTGACCT
CGATGTCGCGGTGGACCTCTTCGAGTACGTCATGAGCCGCCATTACCGGC
GGAAGCTCGTGGCGCCCACCGCCGCCGCAGTTGCCGCCGCTCCCGCCGCG
GCGGTCGCCGGGCCGGAACAGATGGGCGGCCACATGGACCGGGACGGCTG
GGAGAGCCTCGTCACCATGCCGCTGCGGGCCGAGCTCATCCGGGACGGTC
TCTCCGACATGGTTCTCAAGATTGACCAGTACGGCGGCTTTGAGAGCGTG
GCGCGGCGCTGCGGCCTGGCGTACGACGACAGGGTCCTCGCGGAGCTGAA
AAAGGTCACCATGTCGGCCGCCCGCCGCTCCACCTCCAACATCGGAGGCC
TCGGATAA
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