mRNA_P-wetherbeei_contig6938.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6938.1.1
Unique NamemRNA_P-wetherbeei_contig6938.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6938.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6938contigP-wetherbeei_contig6938:51..1661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1369
Hectar predicted targeting categoryother localisation
Exons2
Cds size1158
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186947.00672-UTR-P-wetherbeei_contig6938:50..2561683186947.00672-UTR-P-wetherbeei_contig6938:50..256Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6938 51..256 -
1683186947.0405993-UTR-P-wetherbeei_contig6938:1656..16611683186947.0405993-UTR-P-wetherbeei_contig6938:1656..1661Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6938 1657..1661 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186947.018669-CDS-P-wetherbeei_contig6938:256..3361683186947.018669-CDS-P-wetherbeei_contig6938:256..336Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6938 257..336 -
1683186947.0295568-CDS-P-wetherbeei_contig6938:578..16561683186947.0295568-CDS-P-wetherbeei_contig6938:578..1656Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6938 579..1656 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6938.1.1prot_P-wetherbeei_contig6938.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6938 257..1656 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6938.1.1

>prot_P-wetherbeei_contig6938.1.1 ID=prot_P-wetherbeei_contig6938.1.1|Name=mRNA_P-wetherbeei_contig6938.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=386bp
MSRHRGVRARQYSYDDYDEQDDESYEDGTSYSLEAQRKMLYGGEAVEGEV
GAANLSSYFDAAQPSDAGDAASDAVLVSGIVAAIQAEYGKGTFALPDIEA
AVRDSEYDLDTVRALLETSREGPPIHDAAGQAATPATPQRKLAAPPGLPA
PSTQSAPGARSSWVGSGAKMPPVPFAIGASGGLVPVSLPSAVDAGMAPFS
FDAPSQDDRAAFSGSIAVGGGGGGSGGRKGAGPSSGNGVAADAAVARLAR
LRVDGGSAAAAAAAAWTPISSRECSPVPGKRGGGGAGGIGGRTPVKPVTR
EGSPLSARDRALETALAEDDEGKPDSGDEATAATTTGAVGTGGAGRQRLS
MVVVGHVDADFLLPHIGSSCWSRRAVLHPIVTANC*
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mRNA from alignment at P-wetherbeei_contig6938:51..1661-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6938.1.1 ID=mRNA_P-wetherbeei_contig6938.1.1|Name=mRNA_P-wetherbeei_contig6938.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1611bp|location=Sequence derived from alignment at P-wetherbeei_contig6938:51..1661- (Phaeothamnion wetherbeei SAG_119_79)
GGGGTATGTCTCGACACAGGGGCGTACGCGCCCGCCAGTACTCGTACGAC
GACTATGACGAGCAGGACGACGAGTCGTACGAAGATGGTACGTCGTACTC
GCTCGAGGCGCAGCGTAAAATGCTTTACGGAGGGGAAGCGGTGGAAGGGG
AGGTGGGAGCTGCAAACCTCTCTTCGTATTTCGATGCCGCACAGCCATCC
GACGCAGGCGACGCCGCTTCCGACGCTGTGCTGGTATCAGGGATTGTAGC
CGCGATTCAAGCTGAATACGGCAAGGGCACCTTCGCTTTGCCCGACATTG
AAGCGGCAGTCCGCGACAGCGAGTACGACTTGGATACGGTGAGAGCACTT
TTGGAGACGAGCCGGGAGGGGCCTCCCATCCACGACGCAGCGGGGCAAGC
AGCAACTCCCGCGACGCCGCAACGAAAGCTAGCAGCCCCGCCTGGCCTGC
CGGCACCTTCAACACAATCAGCGCCAGGAGCAAGATCGTCATGGGTGGGT
TCCGGCGCCAAGATGCCCCCTGTCCCGTTTGCCATCGGCGCGTCCGGCGG
CCTCGTCCCCGTCAGCCTCCCATCTGCCGTCGACGCCGGCATGGCTCCGT
TTTCCTTCGATGCACCCAGCCAGGACGATCGCGCTGCTTTCTCTGGCAGC
ATTGCTGTTGGTGGTGGCGGCGGAGGGAGCGGCGGCAGAAAAGGTGCCGG
CCCCAGCAGCGGCAACGGCGTTGCTGCTGATGCCGCAGTTGCGCGGCTTG
CGCGATTACGCGTCGACGGCGGAAGCGCCGCCGCCGCTGCCGCTGCTGCT
TGGACTCCCATCTCAAGCCGAGAATGCTCTCCCGTGCCGGGAAAACGCGG
CGGTGGAGGAGCTGGCGGCATTGGCGGCCGGACGCCCGTCAAGCCGGTGA
CGCGTGAAGGGTCGCCGCTGAGCGCGCGGGATCGCGCACTGGAGACCGCC
CTGGCGGAGGACGATGAAGGAAAACCTGATAGTGGAGACGAGGCGACAGC
GGCGACAACAACAGGCGCTGTCGGCACCGGCGGGGCTGGCAGGCAGCGGC
TGAGTATGGTAGTTGTCGGCCACGTAGATGCAGGTGAGATTTGTGGGTCT
GCGAGTTCGTTCCAACCCTCTCGCCTCGTCGCGTGATGGTTTCGCTGTCT
TCCTTTTGGACTGCCTTGAGGCGTAGCTCGTGCCGGCGCGCTGCTGGCAT
GAACCCTTTTTCTTCTTTTTGGGTAAATTTTCTTTTAAAAGGGAAGACGA
AGGATTGGCTATCCATGTCAATTTGCCCTCCGTTTTCATTTTGCCCCATT
TCTGTTCCCTTGAGTTGCAAATCAGACTTCTTACTACCCCATATCGGCTC
TTCTTGCTGGTCGCGGCGGGCGGTGCTCCATCCAATTGTGACTGCGAACT
GTTAATTTTTGGACGACTGCGACGGGCTTTCTCGGCGGCGGCTTTCTCGG
TGGCCGCGGGTGGCGGCGGTTGGACGTGAAATCGGCCGGCCGTGACCTAC
TTATCAATCCATCGATCGATGACCGAATCCAGGCAAGAGCACTTTGCTAG
GGCAGGTGCTGGTGCAGGCAGGACAGGTAACGGCACGGGCGCTGGCGAAG
AACGAGCGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6938:51..1661-

>mRNA_P-wetherbeei_contig6938.1.1 ID=mRNA_P-wetherbeei_contig6938.1.1|Name=mRNA_P-wetherbeei_contig6938.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1158bp|location=Sequence derived from alignment at P-wetherbeei_contig6938:51..1661- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTCGACACAGGGGCGTACGCGCCCGCCAGTACTCGTACGACGACTA
TGACGAGCAGGACGACGAGTCGTACGAAGATGGTACGTCGTACTCGCTCG
AGGCGCAGCGTAAAATGCTTTACGGAGGGGAAGCGGTGGAAGGGGAGGTG
GGAGCTGCAAACCTCTCTTCGTATTTCGATGCCGCACAGCCATCCGACGC
AGGCGACGCCGCTTCCGACGCTGTGCTGGTATCAGGGATTGTAGCCGCGA
TTCAAGCTGAATACGGCAAGGGCACCTTCGCTTTGCCCGACATTGAAGCG
GCAGTCCGCGACAGCGAGTACGACTTGGATACGGTGAGAGCACTTTTGGA
GACGAGCCGGGAGGGGCCTCCCATCCACGACGCAGCGGGGCAAGCAGCAA
CTCCCGCGACGCCGCAACGAAAGCTAGCAGCCCCGCCTGGCCTGCCGGCA
CCTTCAACACAATCAGCGCCAGGAGCAAGATCGTCATGGGTGGGTTCCGG
CGCCAAGATGCCCCCTGTCCCGTTTGCCATCGGCGCGTCCGGCGGCCTCG
TCCCCGTCAGCCTCCCATCTGCCGTCGACGCCGGCATGGCTCCGTTTTCC
TTCGATGCACCCAGCCAGGACGATCGCGCTGCTTTCTCTGGCAGCATTGC
TGTTGGTGGTGGCGGCGGAGGGAGCGGCGGCAGAAAAGGTGCCGGCCCCA
GCAGCGGCAACGGCGTTGCTGCTGATGCCGCAGTTGCGCGGCTTGCGCGA
TTACGCGTCGACGGCGGAAGCGCCGCCGCCGCTGCCGCTGCTGCTTGGAC
TCCCATCTCAAGCCGAGAATGCTCTCCCGTGCCGGGAAAACGCGGCGGTG
GAGGAGCTGGCGGCATTGGCGGCCGGACGCCCGTCAAGCCGGTGACGCGT
GAAGGGTCGCCGCTGAGCGCGCGGGATCGCGCACTGGAGACCGCCCTGGC
GGAGGACGATGAAGGAAAACCTGATAGTGGAGACGAGGCGACAGCGGCGA
CAACAACAGGCGCTGTCGGCACCGGCGGGGCTGGCAGGCAGCGGCTGAGT
ATGGTAGTTGTCGGCCACGTAGATGCAGACTTCTTACTACCCCATATCGG
CTCTTCTTGCTGGTCGCGGCGGGCGGTGCTCCATCCAATTGTGACTGCGA
ACTGTTAA
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