mRNA_P-wetherbeei_contig693.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig693.4.1
Unique NamemRNA_P-wetherbeei_contig693.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig693.4.1 vs. uniprot
Match: A0A835YTL0_9STRA (Ubiquitin-related domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTL0_9STRA)

HSP 1 Score: 101 bits (252), Expect = 6.040e-23
Identity = 53/88 (60.23%), Postives = 68/88 (77.27%), Query Frame = 2 
Query:  245 EDTKPDIEGDAAGSGGVGEGGETAKETITIRVRDQTGEETYFKIKKTTRMEKVFATYAQRKGVAPNALRFLIDGERITGDKTPKQLEL 508
            ED+KPD+  +           + A ETITIRVRDQTGEET+FK+KKTTRMEKVF+TYAQRKGV  +ALRFL+DG+R+  ++TP +L+L
Sbjct:    3 EDSKPDVGAEDK---------KPAGETITIRVRDQTGEETFFKVKKTTRMEKVFSTYAQRKGVQASALRFLLDGDRVDPNQTPGELDL 81
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BLAST of mRNA_P-wetherbeei_contig693.4.1 vs. uniprot
Match: K3X7L8_GLOUD (Ubiquitin-like domain-containing protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X7L8_GLOUD)

HSP 1 Score: 99.0 bits (245), Expect = 8.080e-22
Identity = 54/92 (58.70%), Postives = 67/92 (72.83%), Query Frame = 2 
Query:  233 RVKMEDTKPDIEGDAAGSGGVGEGGETAKETITIRVRDQTGEETYFKIKKTTRMEKVFATYAQRKGVAPNALRFLIDGERITGDKTPKQLEL 508
            R  M D  P+   DAA +GG     E   E ITIRV+DQ+GEET+FK+K  T+MEK+F+ YAQRKGV  +ALRFL+DG RI+GD+TPK LEL
Sbjct:    8 RSTMSDETPN---DAANAGG-----EKKAEAITIRVKDQSGEETFFKVKPNTKMEKIFSAYAQRKGVPVSALRFLLDGTRISGDQTPKMLEL 91
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BLAST of mRNA_P-wetherbeei_contig693.4.1 vs. uniprot
Match: B7G0R2_PHATC (Small ubiquitin-like modifier n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G0R2_PHATC)

HSP 1 Score: 98.6 bits (244), Expect = 1.000e-21
Identity = 48/63 (76.19%), Postives = 57/63 (90.48%), Query Frame = 2 
Query:  320 ETITIRVRDQTGEETYFKIKKTTRMEKVFATYAQRKGVAPNALRFLIDGERITGDKTPKQLEL 508
            E+IT+RVRDQTGEET+FKIKKTT+M+KVF TYA RKGV  N+LRFL+DG+RIT D+TPK LEL
Sbjct:   15 ESITVRVRDQTGEETFFKIKKTTKMQKVFETYATRKGVQVNSLRFLLDGDRITPDQTPKMLEL 77
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BLAST of mRNA_P-wetherbeei_contig693.4.1 vs. uniprot
Match: A0A7S2UU84_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU84_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.090e-21
Identity = 50/70 (71.43%), Postives = 56/70 (80.00%), Query Frame = 2 
Query:  299 EGGETAKETITIRVRDQTGEETYFKIKKTTRMEKVFATYAQRKGVAPNALRFLIDGERITGDKTPKQLEL 508
            +GG     TITIRVRDQTGEET+FK+KKTTRMEKVF TYA RKGV  NALRFL+DGER+    TPK L+L
Sbjct:   16 DGGGEENNTITIRVRDQTGEETFFKVKKTTRMEKVFTTYASRKGVQVNALRFLLDGERVNPAHTPKMLDL 85
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BLAST of mRNA_P-wetherbeei_contig693.4.1 vs. uniprot
Match: A0A7S1YCA7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YCA7_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.420e-21
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 2 
Query:  299 EGGETAKETITIRVRDQTGEETYFKIKKTTRMEKVFATYAQRKGVAPNALRFLIDGERITGDKTPKQLEL 508
            +G +   E ITIRVRDQ+GEET+FKIKKTT+M KVF TYAQRKGV  ++LRFL+DGERI GD+TPK LEL
Sbjct:   40 DGQKEGSEPITIRVRDQSGEETFFKIKKTTKMSKVFETYAQRKGVNSSSLRFLLDGERIEGDQTPKMLEL 109
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BLAST of mRNA_P-wetherbeei_contig693.4.1 vs. uniprot
Match: A0A448ZJ15_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZJ15_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.660e-21
Identity = 49/67 (73.13%), Postives = 56/67 (83.58%), Query Frame = 2 
Query:  308 ETAKETITIRVRDQTGEETYFKIKKTTRMEKVFATYAQRKGVAPNALRFLIDGERITGDKTPKQLEL 508
            +T  E ITIRVRDQTGEET+FKIKKTT+M KVF TYA RKGV  ++LRFL+DGERI  D+TPK LEL
Sbjct:    9 DTGNEPITIRVRDQTGEETFFKIKKTTKMSKVFGTYANRKGVQLSSLRFLLDGERIEPDQTPKMLEL 75
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BLAST of mRNA_P-wetherbeei_contig693.4.1 vs. uniprot
Match: A0A7S2XQM2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQM2_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.960e-21
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 2 
Query:  308 ETAKETITIRVRDQTGEETYFKIKKTTRMEKVFATYAQRKGVAPNALRFLIDGERITGDKTPKQLEL 508
            E A E ITIRVRDQTGEET+FKIKKTT+M KVF TYAQRKGV   +LRFL+DGERI  D TP+QLEL
Sbjct:   36 EGASEPITIRVRDQTGEETFFKIKKTTKMAKVFETYAQRKGVQSASLRFLLDGERIQPDATPRQLEL 102
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BLAST of mRNA_P-wetherbeei_contig693.4.1 vs. uniprot
Match: A0A6U5EFS5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5EFS5_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.530e-21
Identity = 52/89 (58.43%), Postives = 63/89 (70.79%), Query Frame = 2 
Query:  242 MEDTKPDIEGDAAGSGGVGEGGETAKETITIRVRDQTGEETYFKIKKTTRMEKVFATYAQRKGVAPNALRFLIDGERITGDKTPKQLEL 508
            M +TKP+ + +  G            E ITIRVRDQTGEET+FKIKKTT+M KVF TYAQRKGV  N+LRFL+DG+RI  + TP +LEL
Sbjct:    1 MSETKPEPKAEGGG------------EPITIRVRDQTGEETFFKIKKTTKMSKVFNTYAQRKGVQVNSLRFLLDGDRIQNEDTPAKLEL 77
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BLAST of mRNA_P-wetherbeei_contig693.4.1 vs. uniprot
Match: A0A7S1D4N0_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D4N0_CYCTE)

HSP 1 Score: 95.9 bits (237), Expect = 9.450e-21
Identity = 49/63 (77.78%), Postives = 53/63 (84.13%), Query Frame = 2 
Query:  320 ETITIRVRDQTGEETYFKIKKTTRMEKVFATYAQRKGVAPNALRFLIDGERITGDKTPKQLEL 508
            E ITIRVRDQTGEET+FKIKKTT+M KVF TYAQRKGV   +LRFL+DGERI  D TPK LEL
Sbjct:   11 EPITIRVRDQTGEETFFKIKKTTKMSKVFETYAQRKGVQSTSLRFLLDGERIEPDATPKMLEL 73
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BLAST of mRNA_P-wetherbeei_contig693.4.1 vs. uniprot
Match: A0A067CC35_SAPPC (Ubiquitin-like domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CC35_SAPPC)

HSP 1 Score: 94.7 bits (234), Expect = 2.200e-20
Identity = 47/71 (66.20%), Postives = 57/71 (80.28%), Query Frame = 2 
Query:  296 GEGGETAKETITIRVRDQTGEETYFKIKKTTRMEKVFATYAQRKGVAPNALRFLIDGERITGDKTPKQLEL 508
            G  GE  K+TITIRV+DQ+GEET+FK+K  T+MEK+F+ YAQRKGV   ALRFL+DG RI  D+TPK LEL
Sbjct:   10 GADGEDKKQTITIRVKDQSGEETFFKVKPHTKMEKIFSAYAQRKGVPVTALRFLLDGTRIAADQTPKMLEL 80
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig693.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YTL0_9STRA6.040e-2360.23Ubiquitin-related domain-containing protein n=1 Ta... [more]
K3X7L8_GLOUD8.080e-2258.70Ubiquitin-like domain-containing protein n=2 Tax=P... [more]
B7G0R2_PHATC1.000e-2176.19Small ubiquitin-like modifier n=3 Tax=Phaeodactylu... [more]
A0A7S2UU84_9STRA1.090e-2171.43Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1YCA7_9STRA1.420e-2171.43Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A448ZJ15_9STRA2.660e-2173.13Ubiquitin-like domain-containing protein n=1 Tax=P... [more]
A0A7S2XQM2_9STRA2.960e-2176.12Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6U5EFS5_9STRA3.530e-2158.43Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1D4N0_CYCTE9.450e-2177.78Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A067CC35_SAPPC2.200e-2066.20Ubiquitin-like domain-containing protein n=4 Tax=S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig693contigP-wetherbeei_contig693:7333..8896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr27817
PFAMsRad60-SLD
Model size1145
Max annot lvl2836|Bacillariophyta
KEGG koko:K12160
KEGG Pathwayko03013,ko05418,map03013,map05418
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.66e-24
EggNOG OGsCOG5227@1|root,KOG1769@2759|Eukaryota,2XH1C@2836|Bacillariophyta
DescriptionUbiquitin-2 like Rad60 SUMO-like
Cds size510
COG categoryO
BRITEko00000,ko00001,ko00002,ko03019,ko03029,ko04121,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186946.5688417-UTR-P-wetherbeei_contig693:7332..77261683186946.5688417-UTR-P-wetherbeei_contig693:7332..7726Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig693 7333..7726 -
1683186946.6041217-UTR-P-wetherbeei_contig693:8655..88961683186946.6041217-UTR-P-wetherbeei_contig693:8655..8896Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig693 8656..8896 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186946.5815516-CDS-P-wetherbeei_contig693:7726..78981683186946.5815516-CDS-P-wetherbeei_contig693:7726..7898Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig693 7727..7898 -
1683186946.592261-CDS-P-wetherbeei_contig693:8317..86551683186946.592261-CDS-P-wetherbeei_contig693:8317..8655Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig693 8318..8655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig693.4.1prot_P-wetherbeei_contig693.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig693 7727..8655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig693.4.1

>prot_P-wetherbeei_contig693.4.1 ID=prot_P-wetherbeei_contig693.4.1|Name=mRNA_P-wetherbeei_contig693.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
MEDTKPDIEGDAAGSGGVGEGGETAKETITIRVRDQTGEETYFKIKKTTR
MEKVFATYAQRKGVAPNALRFLIDGERITGDKTPKQLELVRPHSHNFSDS
FCFFFRARCPQILHRRTRTRYGLIFPCSNYIIRFSVSMLKRSCVTSVCKP
RRLLHPQVDCMLEQQGGAP*
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mRNA from alignment at P-wetherbeei_contig693:7333..8896-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig693.4.1 ID=mRNA_P-wetherbeei_contig693.4.1|Name=mRNA_P-wetherbeei_contig693.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1564bp|location=Sequence derived from alignment at P-wetherbeei_contig693:7333..8896- (Phaeothamnion wetherbeei SAG_119_79)
TTTCCGAACCGGCATTCTTTACTGGCTCCGTCGCTCCACTCCATTTGTTC
AAAATATCTTTGAGGGTTCGGAAGGCGGACTTCGCAGGTATACGCCAATA
ATCTGTCTTCTCTCATGAGCTGCTCTTCCTCTTGTTTGCGGTGACAGCTC
CAAGGCAGGAGCGCTGAGGCCACTCCCATCAGTTCTCCACGTTGTTTAAA
TCTCCTCGTGTCTCTCAGGATTTGGACTTTGTCGCGTGAAAATGGAGGAC
ACCAAGCCCGACATCGAGGGTGACGCGGCAGGAAGCGGTGGCGTTGGCGA
AGGCGGCGAAACCGCCAAGGAGACGATTACCATTCGGGTGCGGGACCAGA
CCGGGGAGGAGACATACTTCAAAATCAAGAAGACGACGAGGATGGAGAAG
GTCTTCGCAACGTATGCACAGCGAAAGGGCGTCGCGCCCAACGCCCTGCG
ATTCTTGATTGACGGCGAGCGGATAACGGGAGACAAGACGCCCAAGCAAC
TCGAGCTGGTAAGACCACACTCCCATAACTTCAGCGACAGTTTTTGCTTC
TTCTTCCGGGCGAGGTGCCCCCAAATTCTCTCGTATATGCTTCTTTTTGG
CCTCGTGTTATGTCGACATAACCCGTTCTTGTTGTGAGAAGCCGTTATCC
TCTCCGAGACGGGCGTTCGCTTAACACAGAAAGCGGTGTTCATGGCCATG
TATGCTGAAAATTATGTAGCCGCAAGCTTAGGCTTCGACTGAATGGTCCG
AAGGCTGACGCCGGTTGCTTTGATATCTCAACCATCCTGCCCGGGTGACT
CATCAATGTCTGCGCTGGCGCCTCCCGCAAAATACAACAATCCCGCATCC
GAAAGCGGATTCGAAAGCCCTTCCTGACGCGTCCGCGCCGCTCCTGCCTC
CATTTTCTCATCGTTTGCCTCCGTTTCTTGCCCGGCGTCTCTTCGGGGCT
TGGCTCCCGCCACCGCGGCCTCCACCTCGCCGCTGCCCGGCCCCTGGCCC
ACAGGAGGACCAGGACCAGGTACGGCTTGATTTTTCCTTGTTCAAATTAC
ATCATTCGATTTTCGGTTTCTATGCTTAAGAGGAGTTGTGTAACATCCGT
TTGCAAGCCTCGACGCCTTCTACATCCGCAGGTGGACTGCATGCTTGAGC
AACAGGGCGGCGCCCCATGAGATGGCGTCCGTCAAACCCGCCACAGGAGC
CCCCAAAGTGGAATTCCTGTGGGTGCGCCGCCAACACGGGTCGAGCGGTG
TTTGGCTTGCCAAGCGGCCAGCTCCGGCGGCTGCCGGTGTCCGCAACGGC
GTCGGCGCCGTTGTGGCGGTGGCTGGTTCCCCCGGTGCCGACAGCAGCAC
CTGCGGCAACGCCGTCAAGAGAGGAAGGTGGGGCGTTGAAGGCAAGCAAA
GCGGCGCCGAAGGAAGGTGGCAGGCGCGTTCGGCACCGGCCGCAGTGCGC
TGCTTGTACCGGCCGCCGGCGGTTGTAGTCTGGCTGCCGGGCCAGCATGT
TAACAAGTGCTCACAAGCGCACAAGAACGCGCTTCACGGCGGCGCCTGCC
GCGCCACCGCCCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig693:7333..8896-

>mRNA_P-wetherbeei_contig693.4.1 ID=mRNA_P-wetherbeei_contig693.4.1|Name=mRNA_P-wetherbeei_contig693.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig693:7333..8896- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGACACCAAGCCCGACATCGAGGGTGACGCGGCAGGAAGCGGTGG
CGTTGGCGAAGGCGGCGAAACCGCCAAGGAGACGATTACCATTCGGGTGC
GGGACCAGACCGGGGAGGAGACATACTTCAAAATCAAGAAGACGACGAGG
ATGGAGAAGGTCTTCGCAACGTATGCACAGCGAAAGGGCGTCGCGCCCAA
CGCCCTGCGATTCTTGATTGACGGCGAGCGGATAACGGGAGACAAGACGC
CCAAGCAACTCGAGCTGGTAAGACCACACTCCCATAACTTCAGCGACAGT
TTTTGCTTCTTCTTCCGGGCGAGGTGCCCCCAAATTCTCCACAGGAGGAC
CAGGACCAGGTACGGCTTGATTTTTCCTTGTTCAAATTACATCATTCGAT
TTTCGGTTTCTATGCTTAAGAGGAGTTGTGTAACATCCGTTTGCAAGCCT
CGACGCCTTCTACATCCGCAGGTGGACTGCATGCTTGAGCAACAGGGCGG
CGCCCCATGA
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