mRNA_P-wetherbeei_contig6925.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6925.1.1
Unique NamemRNA_P-wetherbeei_contig6925.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6925.1.1 vs. uniprot
Match: D8LJ52_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ52_ECTSI)

HSP 1 Score: 312 bits (799), Expect = 1.400e-89
Identity = 168/335 (50.15%), Postives = 211/335 (62.99%), Query Frame = 2 
Query: 1076 VKRRRSVAEAAEAAVA-----QVYTNPYVCNTALLYLLLSCLADLFPAVPQYNTALAAALLWAASNFDACPAMHARPFYYTISLAALFTLLLDINFLTSPQPRLAYATGAAMDNPANPEGAALARKMHAFALALVSLVVVVKFAAWQGLLATSPQGRVALDLFWRRFKLLLPMWGEPTRLTQEVYNRLVVLAWLHILGSATMLALAGCTGVSYGWAPQFASSAGAGVPLTILFLFKGVTLLGVSLALFRNMDLALCLNTFGCLACLQRWHRRREGRRRRRHGTAYPKVLLDWEYIMWCVYLKIVDLLFGLWLWVGIGWACDASPPFSGRWGVQTL 2065
            V R   VAE  EAAV      +VY N YVCN  LL L +S +ADL+P  P +N  ++ ALLWA SN D   A+  R F Y +S A L +L +D++FL S     AYA     D   + +   + R MHAF   +V +   +K  +WQGLLAT PQG  AL+L WRRFKL LP+WG P +LT+EVYNR+V LAWLH+L +  +  +AG  G+ + WAPQFASS GAG+PL  +   K +T L VS ALFRNMDLALCLN FGCLAC Q WH+ RE RRR RHG  YPKV+L+W+YIM C Y+KI D+L GLWL             +S R  ++ L
Sbjct:  481 VDRSAEVAEK-EAAVGFEGFDKVYRNTYVCNLCLLTLAVSFMADLYPGAPSHNVPISTALLWACSNVDGVRALRRRSFAYALSTAVLVSLFMDVDFLASDLK--AYALSQLEDEDDDLQRVIVERNMHAFGRIVVGIAAGLKALSWQGLLATFPQGVHALNLLWRRFKLFLPVWGSPRKLTKEVYNRVVALAWLHLLAAMALAVMAGVAGIGFEWAPQFASSQGAGIPLAAICFLKSLTDLLVSAALFRNMDLALCLNVFGCLACFQGWHQAREERRRARHGVTYPKVVLEWDYIMLCGYVKIFDILVGLWLXXXXXXXXXEDRDYSERHSIRML 812
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BLAST of mRNA_P-wetherbeei_contig6925.1.1 vs. uniprot
Match: A0A835YPD1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPD1_9STRA)

HSP 1 Score: 263 bits (673), Expect = 8.830e-72
Identity = 151/351 (43.02%), Postives = 195/351 (55.56%), Query Frame = 2 
Query: 1070 VPVKRRRSVAEAAEAAVAQVYTNPYVCNTALLYLLLSCLADLFPAVPQYNTALAAALLWAASNFDACPAMHARPFYYTISLAALFTLLLDINFLTSPQPRLAYATGAAMDNPANPEGAALARKMHAFALALVSLVVVVKFAAWQ-------------------GLLATSPQGRVALDLFWRRFKLLLPMWGEPTRLTQEVYNRLVVLAWLHILGSATMLALAGCTGVSYGWAPQFASSAGAGVPLTILFLFKGVTLLGVSLALFRNMDLALCLNTFGCLACLQRWHRRREGRRRRRHGTAYPKVLLDWEYIMWCVYLKIVDLLFGLWLWVGIGWACDASPPFSGRWGVQTL 2065
            V VKRRR+V E A   V  V  NPYV N +   L LS L DL+P++P  +T                P+   R     +S AA+         L  P     Y T AA           +A          +SL++++KF  WQ                   GLLATSP+GRVAL LFWRRFKL LP+WGEP  LTQEVYNRL+ L W+H+  +  ++ LA  +G    WAPQF+S  G GVPL++L   K  TL  V+ ALF +MDLAL L  FGC+ C ++WH  RE RR ++HGT  PKV+LDWEY+M CV LK++DLLFG+W+W GIGW+      +S RW V+T+
Sbjct:  347 VAVKRRRTVVEVAADVVDGVAANPYVINLSTALLALSFLLDLYPSIPNVSTQ---------------PSTTLRVREARVSSAAVE--------LEDPT---VYNTDAARK---------VAGDTETVVTVAMSLLIILKFFTWQLSVGTAXXXXXXXXXXXXXGLLATSPEGRVALSLFWRRFKLFLPIWGEPRNLTQEVYNRLIALTWIHLTAAVVLVVLAAASGFGLEWAPQFSSMEGVGVPLSVLIFLKAFTLSFVTGALFSHMDLALSLEVFGCMVCARKWHEMREARRTQKHGTHVPKVVLDWEYVMLCVKLKLLDLLFGVWVWAGIGWSFSPEREYSERWNVKTM 662
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BLAST of mRNA_P-wetherbeei_contig6925.1.1 vs. uniprot
Match: A0A6H5KXN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXN3_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.730e-26
Identity = 57/100 (57.00%), Postives = 66/100 (66.00%), Query Frame = 2 
Query: 1766 KGVTLLGVSLALFRNMDLALCLNTFGCLACLQRWHRRREGRRRRRHGTAYPKVLLDWEYIMWCVYLKIVDLLFGLWLWVGIGWACDASPPFSGRWGVQTL 2065
              +T L VS ALFRNMDLALCLN FGCLAC Q WH+ RE RRR RHG  YPKV+L+W+YIM C Y+KI DLL GLWL             +S R  ++ L
Sbjct:   72 SSLTELLVSAALFRNMDLALCLNVFGCLACFQGWHQAREERRRARHGVTYPKVILEWDYIMLCGYVKIFDLLVGLWLXXXXXXXXXEDRDYSERHSIRML 171
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6925.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LJ52_ECTSI1.400e-8950.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YPD1_9STRA8.830e-7243.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KXN3_9PHAE1.730e-2657.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6925contigP-wetherbeei_contig6925:3..3128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size2070
Hectar predicted targeting categoryother localisation
Exons3
Cds size2067
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186946.2705817-CDS-P-wetherbeei_contig6925:3..3911683186946.2705817-CDS-P-wetherbeei_contig6925:3..391Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6925 4..391 -
1683186946.27945-CDS-P-wetherbeei_contig6925:889..18501683186946.27945-CDS-P-wetherbeei_contig6925:889..1850Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6925 890..1850 -
1683186946.287526-CDS-P-wetherbeei_contig6925:2410..31281683186946.287526-CDS-P-wetherbeei_contig6925:2410..3128Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6925 2411..3128 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6925.1.1prot_P-wetherbeei_contig6925.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6925 4..3128 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6925.1.1

>prot_P-wetherbeei_contig6925.1.1 ID=prot_P-wetherbeei_contig6925.1.1|Name=mRNA_P-wetherbeei_contig6925.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=689bp
AALLPRPPWEVGSPSPSHGRIQLEVCRVWTGDADVLWEAATSDVGGGNGN
GNGNGRGCSADLIGSVEVLRSKAARWDDEAKAFELDLYDGWRPGARLPDG
RARSDPAADTVQLVLPPGGRNGTSGAGGGGGERRGRIPALQVLRAGQSVW
RVGVGGPLSVLQGFALAVIGAQAAVVGAAVAVVDRTVDEAAAAAAAAAAA
AGSAVLSPSAVASAAAMAAVPPLALHKASSPPRARSGSPLDSRPIPNGGP
PSPAGRSRAAVAAAVAAAVAAAVAPRAGAAFALGLRPGRQWWRRAGAQAA
NAANGGGGGGACGACGAGGGGEGGGAGHRDGNGAVVGGAGRRRLQRRQRW
RVDIAGGAGEAAAVRGRGGRGGGGASLYQPVRLQHGAALSLIELPRRSLP
RRATVQHGAGGGAALGRLKLRRLSRDARPPVLLHDIVGGALYAASGHKLF
DQPATAASVRDGRRHGQPRQPRGRGTGAQNARVCLGLGVAGGGREVCGVA
GAAGDVAAGEGGAGPVLATLQATVTDVGRADAADTRGVQPPRGARMAPHP
GFGHHARTRRLHGRQLRLGAAVRVVRRCRRPADHPLPLQGRDTARSVAGA
LPQHGPGAVPQHLRLPRLPAALAPPPRGSPPPPPRYGLPQGASRLGVHHV
VRLPQNRRPALRPLALGRHRLGLRRQPALLGPLGRPDAA
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mRNA from alignment at P-wetherbeei_contig6925:3..3128-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6925.1.1 ID=mRNA_P-wetherbeei_contig6925.1.1|Name=mRNA_P-wetherbeei_contig6925.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3126bp|location=Sequence derived from alignment at P-wetherbeei_contig6925:3..3128- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGCTGTTGCCCCGCCCTCCCTGGGAGGTGGGGTCCCCGTCTCCGTC
GCACGGTCGGATCCAGCTGGAGGTGTGCCGGGTCTGGACCGGAGATGCCG
ACGTCCTGTGGGAAGCTGCCACGTCTGACGTCGGCGGTGGCAATGGCAAT
GGCAATGGCAACGGTCGCGGCTGCAGCGCAGACCTGATCGGTTCCGTGGA
GGTGCTGCGCAGCAAGGCGGCGCGTTGGGACGATGAGGCGAAGGCATTTG
AGCTGGATCTGTACGACGGGTGGCGGCCAGGCGCCCGGCTCCCGGACGGC
CGCGCCCGCTCCGACCCGGCCGCTGACACCGTCCAGCTCGTCCTGCCGCC
CGGCGGAAGGAACGGGACCAGCGGCGCAGGTGGCGGCGGCGGGGAGCGGC
GGGGCCGCATCCCGGCGCTGCAGGTGCTGCGGGCGGGGCAGTCCGTGTGG
CGGGTGGGGGTTGGCGGCCCGCTGTCCGTCCTGCAGGGGTTCGCGCTGGC
CGTCATCGGGGCGCAGGCAGCCGTGGTCGGCGCGGCGGTGGCTGTCGTCG
ACCGAACCGTGGACGAGGCGGCGGCGGCCGCGGCGGCGGCGGCGGCGGCG
GCCGGCTCGGCGGTGCTATCGCCGTCGGCAGTGGCGTCCGCGGCGGCGAT
GGCAGCGGTGCCGCCGCTGGCGCTGCACAAGGCGTCGTCACCGCCCAGGG
CACGGAGCGGCAGCCCGCGTCTCGTCGAGTCGGCGCGGGCGGCGCTGCAG
CGCGCTTTCAATAGCAGCCGCAGCCCGCCGTCTGCGCGCATCACCCCCAC
CGTCGACGACGAGGCGGATGCCGGTGGCGGCGGCGGCGGCAGCGGCGGCA
ACGCTACCACCACTACTGGCAGCGGTGGCAGCAGCAGCGACGGAGCAGGC
GCCAGCGCCGGCATTGACTTCGCCTTTGTCGGCGACAGCATGGCGGGGCC
GCTGCAAACCGGAAGCGTCATGGACACGGCAAACAATATCCTGTCGTCCA
ATATTGCCACAGCAGCTCCCGTACTAACGCGAGGGCCGATGCGGCGCGCG
TCATCGGTGCCAGACCTTGCGGCCGCGGGGGTGCCCAGCAGCGTCGGCGG
CAAGAGCGACTCTGCCACGGCATCGGCCGCCGCTATGACAAGGCCTTCCG
AGCTGTTCACCGCTCCCGGTGCCGTCGCCAGCAAGTACCTGTTGCGACAG
ACCAACGCCGGCGGCGGCGTCGAGAACAGCAGCGGCGGAGGCGAAAACGG
CAGCGGCAGAGGTAACGGGCTGCTCCAGTTGACTCGCGACCCATTCCCAA
CGGCGGACCACCCAGCCCCGCCGGACGTAGTCGCGCCGCTGTCGCCGCCG
CGGTCGCCGCCGCGGTCGCCGCCGCGGTCGCCCCGCGGGCTGGCGCCGCT
TTCGCCCTCGGTCTCCGTCCGGGACGGCAATGGTGGCGGCGGGCCGGAGC
GCAAGCAGCAAATGCCGCCAATGGAGGCGGCGGAGGAGGCGCGTGCGGCG
CGTGCGGCGCGGGGGGCGGCGGCGAGGGAGGCGGCGCGGGCCATCGCGAC
GGTAATGGTGCCGTCGTGGGGGGCGCCGGGCGTCGTCGCCTCCAGCGGCG
GCAGCGGTGGCGCGTCGACATCGCTGGCGGTGCCGGTGAAGCGGCGGCGG
TCCGTGGCCGAGGCGGCCGAGGCGGCGGTGGCGCAAGTTTATACCAACCC
GTACGTTTGCAACACGGCGCTGCTCTATCTCTTATTGAGCTGCCTCGCCG
ATCTCTTCCCCGCCGTGCCACAGTACAACACGGCGCTGGCGGCGGCGCTG
CTCTGGGCCGCCTCAAACTTCGACGCCTGTCCCGCGATGCACGCCCGCCC
GTTCTACTACACGATATCGTTGGCGGCGCTCTTTACGCTGCTTCTGGACA
TAAACTTTTTGACCAGCCCGCAACCGCGGCTAGCGTACGCGACGGGCGCC
GCCATGGACAACCCCGCCAACCCAGAGGGCGCGGCACTGGCGCGCAAAAT
GCACGCGTTTGCCTTGGCCTTGGTGTCGCTGGTGGTGGTCGTGAAGTTTG
CGGCGTGGCAGGGGCTGCTGGCGACGTCGCCGCAGGGGAGGGTGGCGCTG
GACCTGTTCTGGCGACGCTTCAAGCTACTGTTACCGATGTGGGGCGAGCC
GACGCGGCTGACACAAGAGGTGTACAACCGCCTCGTGGTGCTCGCATGGC
TCCACATCCTGGGTTCGGCCACCATGCTCGCACTCGCAGGTAGGTACATC
AGGCAGCCTGAAAGGGGTTTGATGGCTTTTTACGTGATGATTCGCGTTTC
TTTTTACAGTGTTGCGTTATGATTTCATGCTCAGATATCTCTTGCAGCGT
GACTCTGCTGCTTCTGTGCGGCGTATAGTTTTCGAGGAAGATTGGGTTTT
CGTCGGAGATGTTTCTCCCCGCTACTTCTGCTACATCCTTCAGCAGTCCC
TCCTTCTGGCAGCTCCAAGTCTCTTTCTCATCTTCTTGTTTGCCGCTGTT
TCTGGGAGGACACAAGCGCGTTTACTGCGCCAAAGAATTTGTTGACCATA
GCGCCCAATCTGATGCTGTAATCACCATCTGTCGTTGCAATTTCGGTCCG
CCTCCCTGTTTTGTTACGCTATTTCTGGATAAAAAGCATTTGCACTCACG
CTCCTCCACACTAGAAGCCGCCAAACCAACCAGCCAGTAATGCCAAACCC
ACTGTCTATCCGTCCATCTCCCGTTCCTCCGCTGCAGGCTGCACGGGCGT
CAGCTACGGCTGGGCGCCGCAGTTCGCGTCGTCCGCCGGTGCCGGCGTCC
CGCTGACCATCCTCTTCCTCTTCAAGGGCGTGACACTGCTCGGAGTGTCG
CTGGCGCTCTTCCGCAACATGGACCTGGCGCTGTGCCTCAACACCTTCGG
CTGCCTCGCCTGCCTGCAGCGTTGGCACCGCCGCCGCGAGGGTCGCCGCC
GCCGCCGCCACGGTACGGCTTACCCCAAGGTGCTTCTCGACTGGGAGTAC
ATCATGTGGTGCGTCTACCTCAAAATCGTCGACCTGCTCTTCGGCCTCTG
GCTCTGGGTCGGCATCGGCTGGGCCTGCGACGCCAGCCCGCCCTTCTCGG
GCCGCTGGGGCGTCCAGACGCTGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6925:3..3128-

>mRNA_P-wetherbeei_contig6925.1.1 ID=mRNA_P-wetherbeei_contig6925.1.1|Name=mRNA_P-wetherbeei_contig6925.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2067bp|location=Sequence derived from alignment at P-wetherbeei_contig6925:3..3128- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGCTGTTGCCCCGCCCTCCCTGGGAGGTGGGGTCCCCGTCTCCGTC
GCACGGTCGGATCCAGCTGGAGGTGTGCCGGGTCTGGACCGGAGATGCCG
ACGTCCTGTGGGAAGCTGCCACGTCTGACGTCGGCGGTGGCAATGGCAAT
GGCAATGGCAACGGTCGCGGCTGCAGCGCAGACCTGATCGGTTCCGTGGA
GGTGCTGCGCAGCAAGGCGGCGCGTTGGGACGATGAGGCGAAGGCATTTG
AGCTGGATCTGTACGACGGGTGGCGGCCAGGCGCCCGGCTCCCGGACGGC
CGCGCCCGCTCCGACCCGGCCGCTGACACCGTCCAGCTCGTCCTGCCGCC
CGGCGGAAGGAACGGGACCAGCGGCGCAGGTGGCGGCGGCGGGGAGCGGC
GGGGCCGCATCCCGGCGCTGCAGGTGCTGCGGGCGGGGCAGTCCGTGTGG
CGGGTGGGGGTTGGCGGCCCGCTGTCCGTCCTGCAGGGGTTCGCGCTGGC
CGTCATCGGGGCGCAGGCAGCCGTGGTCGGCGCGGCGGTGGCTGTCGTCG
ACCGAACCGTGGACGAGGCGGCGGCGGCCGCGGCGGCGGCGGCGGCGGCG
GCCGGCTCGGCGGTGCTATCGCCGTCGGCAGTGGCGTCCGCGGCGGCGAT
GGCAGCGGTGCCGCCGCTGGCGCTGCACAAGGCGTCGTCACCGCCCAGGG
CACGGAGCGGCAGCCCGCTTGACTCGCGACCCATTCCCAACGGCGGACCA
CCCAGCCCCGCCGGACGTAGTCGCGCCGCTGTCGCCGCCGCGGTCGCCGC
CGCGGTCGCCGCCGCGGTCGCCCCGCGGGCTGGCGCCGCTTTCGCCCTCG
GTCTCCGTCCGGGACGGCAATGGTGGCGGCGGGCCGGAGCGCAAGCAGCA
AATGCCGCCAATGGAGGCGGCGGAGGAGGCGCGTGCGGCGCGTGCGGCGC
GGGGGGCGGCGGCGAGGGAGGCGGCGCGGGCCATCGCGACGGTAATGGTG
CCGTCGTGGGGGGCGCCGGGCGTCGTCGCCTCCAGCGGCGGCAGCGGTGG
CGCGTCGACATCGCTGGCGGTGCCGGTGAAGCGGCGGCGGTCCGTGGCCG
AGGCGGCCGAGGCGGCGGTGGCGCAAGTTTATACCAACCCGTACGTTTGC
AACACGGCGCTGCTCTATCTCTTATTGAGCTGCCTCGCCGATCTCTTCCC
CGCCGTGCCACAGTACAACACGGCGCTGGCGGCGGCGCTGCTCTGGGCCG
CCTCAAACTTCGACGCCTGTCCCGCGATGCACGCCCGCCCGTTCTACTAC
ACGATATCGTTGGCGGCGCTCTTTACGCTGCTTCTGGACATAAACTTTTT
GACCAGCCCGCAACCGCGGCTAGCGTACGCGACGGGCGCCGCCATGGACA
ACCCCGCCAACCCAGAGGGCGCGGCACTGGCGCGCAAAATGCACGCGTTT
GCCTTGGCCTTGGTGTCGCTGGTGGTGGTCGTGAAGTTTGCGGCGTGGCA
GGGGCTGCTGGCGACGTCGCCGCAGGGGAGGGTGGCGCTGGACCTGTTCT
GGCGACGCTTCAAGCTACTGTTACCGATGTGGGGCGAGCCGACGCGGCTG
ACACAAGAGGTGTACAACCGCCTCGTGGTGCTCGCATGGCTCCACATCCT
GGGTTCGGCCACCATGCTCGCACTCGCAGGCTGCACGGGCGTCAGCTACG
GCTGGGCGCCGCAGTTCGCGTCGTCCGCCGGTGCCGGCGTCCCGCTGACC
ATCCTCTTCCTCTTCAAGGGCGTGACACTGCTCGGAGTGTCGCTGGCGCT
CTTCCGCAACATGGACCTGGCGCTGTGCCTCAACACCTTCGGCTGCCTCG
CCTGCCTGCAGCGTTGGCACCGCCGCCGCGAGGGTCGCCGCCGCCGCCGC
CACGGTACGGCTTACCCCAAGGTGCTTCTCGACTGGGAGTACATCATGTG
GTGCGTCTACCTCAAAATCGTCGACCTGCTCTTCGGCCTCTGGCTCTGGG
TCGGCATCGGCTGGGCCTGCGACGCCAGCCCGCCCTTCTCGGGCCGCTGG
GGCGTCCAGACGCTGCT
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