mRNA_P-wetherbeei_contig692.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig692.5.1
Unique NamemRNA_P-wetherbeei_contig692.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig692.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig692contigP-wetherbeei_contig692:7745..8776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size808
Hectar predicted targeting categorymitochondrion
Exons2
Cds size420
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186945.7954295-UTR-P-wetherbeei_contig692:7744..80831683186945.7954295-UTR-P-wetherbeei_contig692:7744..8083Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig692 7745..8083 -
1683186945.8205364-UTR-P-wetherbeei_contig692:8727..87761683186945.8205364-UTR-P-wetherbeei_contig692:8727..8776Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig692 8728..8776 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186945.8044403-CDS-P-wetherbeei_contig692:8083..81141683186945.8044403-CDS-P-wetherbeei_contig692:8083..8114Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig692 8084..8114 -
1683186945.8125532-CDS-P-wetherbeei_contig692:8338..87271683186945.8125532-CDS-P-wetherbeei_contig692:8338..8727Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig692 8339..8727 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig692.5.1prot_P-wetherbeei_contig692.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig692 8084..8727 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig692.5.1

>prot_P-wetherbeei_contig692.5.1 ID=prot_P-wetherbeei_contig692.5.1|Name=mRNA_P-wetherbeei_contig692.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=140bp
MSRWIRAASEMRLRRPSRRCRRGTFTLLPPFVFQEFMHRRLGPLFLFCSN
AYRLPCLFVTTPPPRVSLLCTNLPYWPFFPTPTGCRCVVTVPILTKPNFG
GRESNAEWMGKRCFAASMQHNRNLCGSRLRAWAAAAAGE*
back to top

mRNA from alignment at P-wetherbeei_contig692:7745..8776-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig692.5.1 ID=mRNA_P-wetherbeei_contig692.5.1|Name=mRNA_P-wetherbeei_contig692.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1032bp|location=Sequence derived from alignment at P-wetherbeei_contig692:7745..8776- (Phaeothamnion wetherbeei SAG_119_79)
GGTATTGGAACGCGCCGCCGAGCTAAGAAACAACGACCATGCTTTTTACA
TGTCCAGGTGGATTCGAGCGGCCTCGGAGATGAGATTGAGGAGGCCGAGC
AGGCGATGCAGGAGGGGCACTTTTACCCTGCTCCCTCCCTTTGTTTTCCA
GGAGTTTATGCATCGCCGTTTGGGTCCTTTGTTTCTCTTTTGTTCCAATG
CCTATCGTTTGCCGTGTTTGTTTGTCACTACTCCTCCACCTCGCGTCAGC
TTACTCTGTACCAATTTACCGTATTGGCCGTTCTTTCCAACGCCGACTGG
TTGCAGGTGCGTCGTGACGGTTCCGATTCTGACGAAGCCGAACTTCGGCG
GCAGGGAGAGCAACGCCGAATGGATGGGCAAACGATGCTTCGCAGCGAGC
ATGCAGCATAACCGGAATCTTTGCGGCAGCAGATTGCGGCGAGTGTTTGT
TTGCTTTTTGCTTGCACGCAATCAGTTTCAGCATCCATATCGGTTGCCGG
TCGAGGCGAGCGTTGTTTCGGATGGGCTGACTCTTATAAAGGCAGTTCTT
CCGCGGGCGCGGCTTGGACACGAAGCGCGTTTGGACTGCACTTCTTAAAT
ACTATACTGTTGTACCACCCATTCCCGGAAAACCCCGGCATGGCTTTTTC
CGTCACTTGCAGCGCATGGGCAGCAGCGGCAGCAGGGGAGTAAGTAGTCC
AGAATACCGAGTGGTACTGGCGGGCGCCGCAGCAGCGCTCGGCACTAAGG
CACGAGGCGGCGGACGGCGTCTCCAGGCGGCGGCAATTAGGGGCAGGCGG
CGCTGGTCGAGACCCGACGGCATGATGGGCGTGCGACGCCGGCAACCCTC
TTCCACTTTAAAAATGATTTCTTCTCAAAGCCTTTCTCCGTTTGGGGGCC
AGAAATGGCTGACACAAGTGGCACCCTTCGCCCCTTTTCTCCGGCAGGGA
GATTCTGCCGAACGAAGCGTGCGTCTTCGACACCTGGAAGAATTGGCGCG
GCTTTTCCTTTCGCAGAAAACAAGGAAAACAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig692:7745..8776-

>mRNA_P-wetherbeei_contig692.5.1 ID=mRNA_P-wetherbeei_contig692.5.1|Name=mRNA_P-wetherbeei_contig692.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig692:7745..8776- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCAGGTGGATTCGAGCGGCCTCGGAGATGAGATTGAGGAGGCCGAG
CAGGCGATGCAGGAGGGGCACTTTTACCCTGCTCCCTCCCTTTGTTTTCC
AGGAGTTTATGCATCGCCGTTTGGGTCCTTTGTTTCTCTTTTGTTCCAAT
GCCTATCGTTTGCCGTGTTTGTTTGTCACTACTCCTCCACCTCGCGTCAG
CTTACTCTGTACCAATTTACCGTATTGGCCGTTCTTTCCAACGCCGACTG
GTTGCAGGTGCGTCGTGACGGTTCCGATTCTGACGAAGCCGAACTTCGGC
GGCAGGGAGAGCAACGCCGAATGGATGGGCAAACGATGCTTCGCAGCGAG
CATGCAGCATAACCGGAATCTTTGCGGCAGCAGATTGCGCGCATGGGCAG
CAGCGGCAGCAGGGGAGTAA
back to top