mRNA_P-wetherbeei_contig6917.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6917.1.1
Unique NamemRNA_P-wetherbeei_contig6917.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6917.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6917contigP-wetherbeei_contig6917:255..2771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2517
Hectar predicted targeting categoryother localisation
Exons1
Cds size1863
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186945.6618748-UTR-P-wetherbeei_contig6917:254..4031683186945.6618748-UTR-P-wetherbeei_contig6917:254..403Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6917 255..403 +
1683186945.6822324-UTR-P-wetherbeei_contig6917:2266..27711683186945.6822324-UTR-P-wetherbeei_contig6917:2266..2771Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6917 2267..2771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186945.6721354-CDS-P-wetherbeei_contig6917:403..22661683186945.6721354-CDS-P-wetherbeei_contig6917:403..2266Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6917 404..2266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6917.1.1prot_P-wetherbeei_contig6917.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6917 404..2266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6917.1.1

>prot_P-wetherbeei_contig6917.1.1 ID=prot_P-wetherbeei_contig6917.1.1|Name=mRNA_P-wetherbeei_contig6917.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=621bp
MTAAAAAAADTSGSAAGNGNGRKGRVRVRNGTAPPPSAGAGAPATGNNRG
GGSAYGGDSAASGGDWITPSSARGKGKATAAAGTSASSNSTSAVAACGGG
APFTVVRGGRPKPQPAVPAVAAPSAGWINGHGVTPASGGKAAAAVPALTA
AAAAAAAAAAGAAAPKTAAKAAAKPAAPVSATPATRPAPQMMATTVAAAG
AAKPAVVRGGRPPKGSAGMGGGPGTASSPFAAVTAAGVTAAQGGRVAAAL
VAAVAPGHAGGRAAGKAFVPPPALSLEDFPVLGSASKAKQTAPAPPPTPP
AAAAPSPRPPSPPIDPVRAPPRAQALPAAEAAPAKPTQQLQVLVSTGSSS
FDPPVLASFPPSPYLPSPLGPPGPRGPPLLDPVGPPLGSPLRRVASPIGS
PLAPVGPPGASASGRVVSPLAPLGSPLGSPLAPIGVSLTPVGLPERQHAP
IANGTVGAVGGGRPKAPDGAFGVIGGGFGGVVGGGLGGVGMNGVLGSNGG
GGAFGSSGAGAGAFGGGAAMLTGPMFGGGGLFGGGLGVLACTIGGEVPVS
SEPPERGGRKLHGENWEDFLQRTGSILELAAAMEREEDHPKGVAVPVLAP
APIQQGGPLDEVGTAGPLVA*
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mRNA from alignment at P-wetherbeei_contig6917:255..2771+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6917.1.1 ID=mRNA_P-wetherbeei_contig6917.1.1|Name=mRNA_P-wetherbeei_contig6917.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2517bp|location=Sequence derived from alignment at P-wetherbeei_contig6917:255..2771+ (Phaeothamnion wetherbeei SAG_119_79)
GGAAGCGTGGCAAGCGCGGCCCGAAAAAGCGCGACGGCGACGACTCAGCG
GCGGGAAGCCCGGAGAAAGGCGCCGCCGCAGGAGCGGCGGCGGCGGCGGC
ACCGGCGGCGGCGGCGGGAGCGCCGACTGCTGCTGCTGCTGCAAAGGCCA
TGACGGCAGCAGCGGCGGCGGCTGCGGACACTTCTGGCTCAGCTGCCGGA
AATGGCAACGGGCGCAAGGGAAGGGTGCGGGTACGCAACGGGACCGCGCC
CCCCCCGTCCGCCGGCGCCGGCGCTCCCGCTACGGGGAACAACCGCGGCG
GCGGCAGCGCTTATGGCGGCGACAGTGCTGCTTCCGGCGGGGATTGGATC
ACGCCGTCCTCGGCCCGCGGCAAGGGCAAAGCCACCGCTGCGGCAGGGAC
GTCCGCTTCGTCGAACTCCACTTCCGCCGTCGCCGCCTGCGGCGGCGGAG
CGCCATTTACGGTGGTGCGGGGAGGCAGACCAAAGCCTCAGCCGGCCGTG
CCTGCAGTGGCGGCGCCGTCGGCCGGATGGATTAATGGCCACGGGGTGAC
ACCGGCGTCAGGAGGGAAGGCTGCCGCAGCGGTACCCGCATTGACAGCAG
CAGCGGCGGCGGCGGCGGCTGCGGCGGCAGGTGCGGCAGCTCCGAAAACG
GCAGCAAAGGCTGCGGCGAAGCCAGCGGCACCGGTGTCTGCCACACCTGC
CACACGCCCGGCGCCTCAGATGATGGCGACGACGGTTGCGGCGGCTGGCG
CGGCCAAACCCGCAGTGGTGCGAGGCGGGCGGCCGCCAAAGGGGTCGGCG
GGGATGGGTGGGGGGCCCGGAACGGCGTCAAGTCCGTTTGCCGCCGTCAC
GGCCGCCGGCGTCACGGCGGCGCAGGGCGGCAGGGTCGCGGCGGCTTTGG
TGGCGGCGGTGGCGCCGGGTCATGCGGGAGGGCGGGCGGCCGGTAAGGCG
TTTGTGCCGCCGCCGGCGCTGTCGCTCGAAGACTTTCCGGTACTTGGGAG
CGCCTCAAAGGCAAAGCAGACTGCGCCGGCACCGCCACCGACGCCGCCTG
CGGCTGCGGCGCCCTCACCGCGGCCGCCGTCGCCGCCGATTGATCCGGTG
CGGGCACCGCCGCGTGCGCAGGCGCTGCCAGCTGCAGAAGCGGCACCGGC
GAAGCCAACGCAGCAGCTGCAGGTGCTGGTTTCAACGGGTTCGTCCTCGT
TCGATCCTCCCGTTCTCGCATCTTTTCCCCCATCGCCGTACCTGCCTTCT
CCGCTGGGGCCGCCGGGGCCGAGGGGGCCGCCGCTGCTGGATCCGGTCGG
CCCGCCTTTGGGATCGCCGCTACGGCGTGTCGCATCGCCGATCGGATCCC
CACTAGCTCCCGTCGGGCCGCCTGGAGCATCGGCCTCGGGGCGCGTCGTC
TCGCCGTTGGCGCCACTCGGTTCGCCGCTGGGATCGCCGCTCGCGCCCAT
CGGAGTGTCTCTGACGCCCGTGGGGCTGCCGGAGCGCCAGCACGCGCCCA
TCGCCAATGGCACCGTCGGCGCCGTGGGCGGCGGCCGGCCAAAGGCGCCT
GACGGTGCTTTTGGCGTCATCGGCGGCGGGTTCGGTGGCGTCGTCGGCGG
CGGTCTCGGCGGCGTCGGCATGAATGGCGTCCTCGGCAGCAACGGCGGCG
GCGGGGCATTTGGCAGCAGCGGCGCCGGCGCCGGCGCCTTCGGCGGCGGC
GCGGCGATGCTCACCGGGCCGATGTTCGGCGGCGGCGGGCTGTTCGGCGG
CGGGCTCGGGGTCCTCGCCTGCACCATCGGCGGGGAGGTTCCGGTGTCGA
GCGAACCGCCAGAACGTGGCGGTCGGAAATTGCATGGTGAGAACTGGGAG
GACTTCCTGCAGCGGACGGGATCCATCCTGGAGCTAGCGGCGGCGATGGA
GCGAGAGGAAGACCACCCAAAGGGCGTCGCCGTACCTGTTCTGGCTCCGG
CTCCAATCCAGCAGGGCGGACCGTTGGACGAGGTCGGGACGGCAGGGCCC
CTGGTGGCGTAGCAGGCATAGCACATGAGGAAGCGACGCGGCGAATGTAG
TCGGCGCTTGGCATTGTACATGGCTGGGGCGTCTCACTAGGCATTGGGGG
AACAACAATTCTTACTTGAACACTCTAGCGGCAGTAGCTTCTAGTGGTGG
GGCCAGGCCAAGCGTTGACAGAGAGCTGGGGCGGCCGGGGGTGGCAACGG
CAGGTAGGTAGGCAGGCAAGGAGGGGAGAATAGACAGCAGCAGACCGCAG
AAGCAGCTTTGAAGCTCTAGGGGGCATGAATTTTGCGCTGGCAAAAAGTG
CCCGCGGTTGTTCCGAATGGCCTGTCCGCAGCCCCAGAAAAGTCCAGGAT
CCTTCCGGGAAGGGACGTAAGCTGGAGACAACTTCCCACTGTCCATCTCT
GATCACTATCAACATATACCATGCCCCCAGACAGCAAAGGTGTGGCATAA
AAGGCGCCGACAAGGAAGTCCGTGAAATTACTTAGTCTCCTCACAGTTCA
ATGACGACAGACGCAGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6917:255..2771+

>mRNA_P-wetherbeei_contig6917.1.1 ID=mRNA_P-wetherbeei_contig6917.1.1|Name=mRNA_P-wetherbeei_contig6917.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1863bp|location=Sequence derived from alignment at P-wetherbeei_contig6917:255..2771+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGCAGCAGCGGCGGCGGCTGCGGACACTTCTGGCTCAGCTGCCGG
AAATGGCAACGGGCGCAAGGGAAGGGTGCGGGTACGCAACGGGACCGCGC
CCCCCCCGTCCGCCGGCGCCGGCGCTCCCGCTACGGGGAACAACCGCGGC
GGCGGCAGCGCTTATGGCGGCGACAGTGCTGCTTCCGGCGGGGATTGGAT
CACGCCGTCCTCGGCCCGCGGCAAGGGCAAAGCCACCGCTGCGGCAGGGA
CGTCCGCTTCGTCGAACTCCACTTCCGCCGTCGCCGCCTGCGGCGGCGGA
GCGCCATTTACGGTGGTGCGGGGAGGCAGACCAAAGCCTCAGCCGGCCGT
GCCTGCAGTGGCGGCGCCGTCGGCCGGATGGATTAATGGCCACGGGGTGA
CACCGGCGTCAGGAGGGAAGGCTGCCGCAGCGGTACCCGCATTGACAGCA
GCAGCGGCGGCGGCGGCGGCTGCGGCGGCAGGTGCGGCAGCTCCGAAAAC
GGCAGCAAAGGCTGCGGCGAAGCCAGCGGCACCGGTGTCTGCCACACCTG
CCACACGCCCGGCGCCTCAGATGATGGCGACGACGGTTGCGGCGGCTGGC
GCGGCCAAACCCGCAGTGGTGCGAGGCGGGCGGCCGCCAAAGGGGTCGGC
GGGGATGGGTGGGGGGCCCGGAACGGCGTCAAGTCCGTTTGCCGCCGTCA
CGGCCGCCGGCGTCACGGCGGCGCAGGGCGGCAGGGTCGCGGCGGCTTTG
GTGGCGGCGGTGGCGCCGGGTCATGCGGGAGGGCGGGCGGCCGGTAAGGC
GTTTGTGCCGCCGCCGGCGCTGTCGCTCGAAGACTTTCCGGTACTTGGGA
GCGCCTCAAAGGCAAAGCAGACTGCGCCGGCACCGCCACCGACGCCGCCT
GCGGCTGCGGCGCCCTCACCGCGGCCGCCGTCGCCGCCGATTGATCCGGT
GCGGGCACCGCCGCGTGCGCAGGCGCTGCCAGCTGCAGAAGCGGCACCGG
CGAAGCCAACGCAGCAGCTGCAGGTGCTGGTTTCAACGGGTTCGTCCTCG
TTCGATCCTCCCGTTCTCGCATCTTTTCCCCCATCGCCGTACCTGCCTTC
TCCGCTGGGGCCGCCGGGGCCGAGGGGGCCGCCGCTGCTGGATCCGGTCG
GCCCGCCTTTGGGATCGCCGCTACGGCGTGTCGCATCGCCGATCGGATCC
CCACTAGCTCCCGTCGGGCCGCCTGGAGCATCGGCCTCGGGGCGCGTCGT
CTCGCCGTTGGCGCCACTCGGTTCGCCGCTGGGATCGCCGCTCGCGCCCA
TCGGAGTGTCTCTGACGCCCGTGGGGCTGCCGGAGCGCCAGCACGCGCCC
ATCGCCAATGGCACCGTCGGCGCCGTGGGCGGCGGCCGGCCAAAGGCGCC
TGACGGTGCTTTTGGCGTCATCGGCGGCGGGTTCGGTGGCGTCGTCGGCG
GCGGTCTCGGCGGCGTCGGCATGAATGGCGTCCTCGGCAGCAACGGCGGC
GGCGGGGCATTTGGCAGCAGCGGCGCCGGCGCCGGCGCCTTCGGCGGCGG
CGCGGCGATGCTCACCGGGCCGATGTTCGGCGGCGGCGGGCTGTTCGGCG
GCGGGCTCGGGGTCCTCGCCTGCACCATCGGCGGGGAGGTTCCGGTGTCG
AGCGAACCGCCAGAACGTGGCGGTCGGAAATTGCATGGTGAGAACTGGGA
GGACTTCCTGCAGCGGACGGGATCCATCCTGGAGCTAGCGGCGGCGATGG
AGCGAGAGGAAGACCACCCAAAGGGCGTCGCCGTACCTGTTCTGGCTCCG
GCTCCAATCCAGCAGGGCGGACCGTTGGACGAGGTCGGGACGGCAGGGCC
CCTGGTGGCGTAG
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