mRNA_P-wetherbeei_contig6912.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6912.2.1
Unique NamemRNA_P-wetherbeei_contig6912.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6912.2.1 vs. uniprot
Match: A0A6H5JU63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU63_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.180e-12
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 3 
Query:  264 RGHKTVSAVKKRFRLTGSGHIKRGHCGKRHGTGPLSRTHKQRLGQTAALSGASKVKVMRQLG 449
            RGHKTVS+VKKR R+TGSG++KRG  G RH TGP  R+  + LGQT  + G  K KV+  LG
Sbjct:   29 RGHKTVSSVKKRVRITGSGNLKRGQSGMRHITGPKPRSRLRNLGQTKLILGKQKKKVLWMLG 90
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BLAST of mRNA_P-wetherbeei_contig6912.2.1 vs. uniprot
Match: A0A832I238_9BACT (50S ribosomal protein L35 n=1 Tax=Candidatus Eisenbacteria bacterium TaxID=2212470 RepID=A0A832I238_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 6.020e-6
Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 3 
Query:  273 KTVSAVKKRFRLTGSGHIKRGHCGKRHGTGPLSRTHKQRLGQTAALSGASKVKVMRQLGK 452
            KT  +  KRF++TG+G +KRGH G RHG    SR  K++L  T  L+ A + +V+R LG+
Sbjct:    5 KTNRSAAKRFKITGTGKVKRGHSGVRHGMIGKSRDRKRKLTGTTVLARADQDRVLRMLGQ 64
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BLAST of mRNA_P-wetherbeei_contig6912.2.1 vs. uniprot
Match: A0A8J7WKW3_9ACTN (50S ribosomal protein L35 n=1 Tax=Actinocrinis puniceicyclus TaxID=977794 RepID=A0A8J7WKW3_9ACTN)

HSP 1 Score: 48.5 bits (114), Expect = 6.300e-5
Identity = 28/61 (45.90%), Postives = 36/61 (59.02%), Query Frame = 3 
Query:  270 HKTVSAVKKRFRLTGSGHIKRGHCGKRHGTGPLSRTHKQRLGQTAALSGASKVKVMRQLGK 452
            +KT S  KKRFRLTG+G +KRG  GKRH       T+ +R+     +S A   K+ R LGK
Sbjct:    4 NKTHSGAKKRFRLTGTGKVKRGQAGKRHLLEHKPSTYTRRVTGEVVVSPADTKKIKRLLGK 64
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BLAST of mRNA_P-wetherbeei_contig6912.2.1 vs. uniprot
Match: A0A448Z9R7_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9R7_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 7.450e-5
Identity = 29/60 (48.33%), Postives = 35/60 (58.33%), Query Frame = 3 
Query:  237 LPSPFEWQSRGHKTVSAVKKRFRLTGSGHIKRGHCGKRHGTGPLSRTHKQRLGQTAALSG 416
            L +P  ++S G KT S  KKRFR+ GSG IKR   GK H TG L R    RLG +  + G
Sbjct:   62 LLTPLRYKS-GMKTHSGAKKRFRVRGSGSIKRPKSGKSHNTGYLKRQRANRLGHSTGIEG 120
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6912.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JU63_9PHAE1.180e-1258.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A832I238_9BACT6.020e-645.0050S ribosomal protein L35 n=1 Tax=Candidatus Eisen... [more]
A0A8J7WKW3_9ACTN6.300e-545.9050S ribosomal protein L35 n=1 Tax=Actinocrinis pun... [more]
A0A448Z9R7_9STRA7.450e-548.33Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6912contigP-wetherbeei_contig6912:2634..3099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008873592.1
PFAMsRibosomal_L35p
Model size466
Max annot lvl2759|Eukaryota
KEGG koko:K02916
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.61e-07
EggNOG OGs2E0SW@1|root,2S86K@2759|Eukaryota
DescriptionRibosomal protein L35
Cds size330
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186945.6096797-UTR-P-wetherbeei_contig6912:2633..26441683186945.6096797-UTR-P-wetherbeei_contig6912:2633..2644Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6912 2634..2644 -
1683186945.6318362-UTR-P-wetherbeei_contig6912:2974..30991683186945.6318362-UTR-P-wetherbeei_contig6912:2974..3099Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6912 2975..3099 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186945.6214225-CDS-P-wetherbeei_contig6912:2644..29741683186945.6214225-CDS-P-wetherbeei_contig6912:2644..2974Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6912 2645..2974 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6912.2.1prot_P-wetherbeei_contig6912.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6912 2645..2974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6912.2.1

>prot_P-wetherbeei_contig6912.2.1 ID=prot_P-wetherbeei_contig6912.2.1|Name=mRNA_P-wetherbeei_contig6912.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=110bp
MNALASLAPRLWGAGAALGRQTWQASAAAAMRWPATILPSPFEWQSRGHK
TVSAVKKRFRLTGSGHIKRGHCGKRHGTGPLSRTHKQRLGQTAALSGASK
VKVMRQLGK*
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mRNA from alignment at P-wetherbeei_contig6912:2634..3099-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6912.2.1 ID=mRNA_P-wetherbeei_contig6912.2.1|Name=mRNA_P-wetherbeei_contig6912.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=466bp|location=Sequence derived from alignment at P-wetherbeei_contig6912:2634..3099- (Phaeothamnion wetherbeei SAG_119_79)
ATAACGATTCCAAGACAGACTTGTACAGACATCGCCAGAGCACTTTGAAG
CGCCCATCCGGTATAGGCAGCCGCAAAATACCCACCACAGCAGTTGCGGA
CCCTTGCTTGCTGCATCCAGACGAGATGAACGCGTTGGCATCACTTGCCC
CGCGATTGTGGGGGGCTGGAGCGGCCTTGGGACGACAAACGTGGCAGGCG
AGCGCAGCAGCAGCGATGCGATGGCCCGCCACGATTTTGCCCTCGCCGTT
TGAGTGGCAAAGCCGAGGACACAAGACCGTCTCGGCCGTCAAGAAGCGCT
TTCGGCTCACAGGGTCAGGACACATCAAGCGAGGCCACTGCGGGAAGCGG
CACGGCACCGGGCCGCTCTCAAGAACGCATAAGCAGCGGCTCGGCCAGAC
AGCCGCTCTGTCAGGCGCTAGCAAGGTCAAGGTGATGAGGCAACTGGGAA
AATAAGAAAAGATTAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6912:2634..3099-

>mRNA_P-wetherbeei_contig6912.2.1 ID=mRNA_P-wetherbeei_contig6912.2.1|Name=mRNA_P-wetherbeei_contig6912.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig6912:2634..3099- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACGCGTTGGCATCACTTGCCCCGCGATTGTGGGGGGCTGGAGCGGC
CTTGGGACGACAAACGTGGCAGGCGAGCGCAGCAGCAGCGATGCGATGGC
CCGCCACGATTTTGCCCTCGCCGTTTGAGTGGCAAAGCCGAGGACACAAG
ACCGTCTCGGCCGTCAAGAAGCGCTTTCGGCTCACAGGGTCAGGACACAT
CAAGCGAGGCCACTGCGGGAAGCGGCACGGCACCGGGCCGCTCTCAAGAA
CGCATAAGCAGCGGCTCGGCCAGACAGCCGCTCTGTCAGGCGCTAGCAAG
GTCAAGGTGATGAGGCAACTGGGAAAATAA
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