mRNA_P-wetherbeei_contig6909.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6909.3.1
Unique NamemRNA_P-wetherbeei_contig6909.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6909.3.1 vs. uniprot
Match: D7FH27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH27_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.950e-16
Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = 2 
Query:  584 SQDDVDLLEFTEAYQEVLTALSDADNESYSAAFADYSGGGHLKGSQFIAKARISVKIARDHYADALRALKI 796
            SQ D+D++E+ EAY EVLTAL DA+N+ YSA FADYSGGG  KGSQFIAKA  S+KIA+D + +  + L I
Sbjct:  193 SQGDIDVIEYVEAYMEVLTALGDAENDLYSANFADYSGGGGTKGSQFIAKANKSLKIAKDEFKEVNKILGI 263
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BLAST of mRNA_P-wetherbeei_contig6909.3.1 vs. uniprot
Match: A0A835ZH00_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH00_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.950e-13
Identity = 37/70 (52.86%), Postives = 53/70 (75.71%), Query Frame = 2 
Query:  590 DDVDLLEFTEAYQEVLTALSDADNESYSAAFADYSGGGHLKGSQFIAKARISVKIARDHYADALRALKID 799
            +++DL +F EAYQ VLT LSDA+N+ YSA FAD+SGGG LKG+ FI  A+ S+  A+ ++ + LR L++D
Sbjct:   89 EEIDLADFVEAYQAVLTDLSDAENDLYSANFADFSGGGQLKGTNFIKAAKKSIAAAKLNFEEILRTLQLD 158
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BLAST of mRNA_P-wetherbeei_contig6909.3.1 vs. uniprot
Match: A0A7S4DIQ5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIQ5_HETAK)

HSP 1 Score: 69.7 bits (169), Expect = 3.360e-10
Identity = 34/57 (59.65%), Postives = 46/57 (80.70%), Query Frame = 2 
Query:  590 DDVDLLEFTEAYQEVLTALSDADNESYSAAFADYSGGGHLKGSQFIAKARISVKIAR 760
            D VDL E+ E Y+EVLTAL+DA+NE+YSA FAD+SGGG LK SQFI +++  + +A+
Sbjct:  166 DYVDLDEYAEKYEEVLTALADAENEAYSANFADFSGGGQLKSSQFIKRSQKRIAVAQ 222
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BLAST of mRNA_P-wetherbeei_contig6909.3.1 vs. uniprot
Match: A0A7S2UXU3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXU3_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.900e-6
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 2 
Query:  545 LSSSFLLFIRPLLS-QDDVDL------LEFTEAYQEVLTALSDADNESYSAAFADYSGGGHLKGSQFIAKARISVKIA 757
            +SSS   F + L   +D VDL      +E+ E  +EV+T L DA+N+ YSA FA++SGGG LK +QFI KAR  VK A
Sbjct:  150 VSSSLTSFKKALYGVRDAVDLPSSFDEIEWAEKAEEVVTCLGDAENDFYSANFAEFSGGGQLKSAQFIKKARPFVKKA 227
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BLAST of mRNA_P-wetherbeei_contig6909.3.1 vs. uniprot
Match: A0A0G4H676_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H676_VITBC)

HSP 1 Score: 54.7 bits (130), Expect = 5.710e-5
Identity = 27/41 (65.85%), Postives = 29/41 (70.73%), Query Frame = 3 
Query:  129 ELLENWETITATVDGDAVRRYLGTVGVSSPLSVIKRAFATV 251
            ELL+ W T+ A  DGDAVRRYLGTVG  SPL  I RAF  V
Sbjct:  129 ELLDKWGTVAAKGDGDAVRRYLGTVGTYSPLFQINRAFEGV 169
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6909.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FH27_ECTSI1.950e-1661.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZH00_9STRA1.950e-1352.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4DIQ5_HETAK3.360e-1059.65Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UXU3_9STRA1.900e-648.72Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0G4H676_VITBC5.710e-565.85Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6909contigP-wetherbeei_contig6909:2277..3263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size987
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_003260.1
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186945.2690794-UTR-P-wetherbeei_contig6909:2276..24581683186945.2690794-UTR-P-wetherbeei_contig6909:2276..2458Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6909 2277..2458 -
1683186945.2876515-UTR-P-wetherbeei_contig6909:2785..32631683186945.2876515-UTR-P-wetherbeei_contig6909:2785..3263Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6909 2786..3263 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186945.2785075-CDS-P-wetherbeei_contig6909:2458..27851683186945.2785075-CDS-P-wetherbeei_contig6909:2458..2785Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6909 2459..2785 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6909.3.1prot_P-wetherbeei_contig6909.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6909 2459..2785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6909.3.1

>prot_P-wetherbeei_contig6909.3.1 ID=prot_P-wetherbeei_contig6909.3.1|Name=mRNA_P-wetherbeei_contig6909.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
MKAEGKRKHFGVMFSSPAFFHFLSSSFLLFIRPLLSQDDVDLLEFTEAYQ
EVLTALSDADNESYSAAFADYSGGGHLKGSQFIAKARISVKIARDHYADA
LRALKIDP*
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mRNA from alignment at P-wetherbeei_contig6909:2277..3263-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6909.3.1 ID=mRNA_P-wetherbeei_contig6909.3.1|Name=mRNA_P-wetherbeei_contig6909.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=987bp|location=Sequence derived from alignment at P-wetherbeei_contig6909:2277..3263- (Phaeothamnion wetherbeei SAG_119_79)
TCGTTTCCTCTCCTTTCTTTTCCAAGATGTTTTCTCTACCGCTGTTCCTT
ATGCAGCTTGCCAACGTTGCATGCCGAATTGCGCGTAACTGAGACGCCGC
CTCTGCCAACCGGTTGTCCCTATTCGCAGAACTGCTGGAAAATTGGGAAA
CGATCACGGCAACTGTTGACGGTGATGCCGTACGGAGGTATTTGGGCACA
GTGGGTGTCAGCTCGCCACTTTCGGTCATCAAGAGGGCGTTCGCCACCGT
CCGGGACGACGAGGCTGTCTCGGTATGCCCTGCTCCTGGGGGACGGCGGC
GGTGCAAAGGACCTTTTCTCTCTTCCTCCTGCCACGATAGACTTGGTTTC
GGTGCGATAGATCCTGTGCGGCACCTGCCGTATCACCGCTAGTACGATTC
TCTTGGGAGGAGCAGCAGCTGCTCGATTCGTGTGCATCAGGCTCGTCTTA
TGTAACCGGGGGAAAGAGTCGGTGGGAGATGAAGGCGGAAGGCAAGAGGA
AACACTTTGGAGTAATGTTTTCCTCGCCGGCTTTCTTCCATTTCCTTTCC
TCTTCTTTCCTTCTTTTCATCCGCCCTCTCCTTTCGCAGGACGACGTGGA
CCTGTTGGAATTCACGGAGGCCTACCAGGAAGTCCTTACCGCCCTCTCGG
ATGCGGACAACGAAAGCTATTCGGCCGCCTTTGCGGATTACTCCGGCGGC
GGCCACTTGAAAGGGAGCCAGTTCATTGCGAAGGCGCGCATCAGCGTGAA
GATAGCAAGGGATCATTACGCCGACGCGCTGCGGGCGCTGAAAATCGACC
CATGAGGCGCGAGGGTGCGGCAACAGCTGGTGGCGGCTGCTGGTGGCGGC
GGCTGGTGGCAGCGGCTGGTGGCAGCGCGCAGACCGCGGGCAGCGGGCGG
CTGGCAGTTGGCGGCTGGTTCCTGCATGAGTTGTTCCTGGTGGTGGCTGT
GGCAGCGGCAGCAGCAGTAGCGGCGGCAGCGGCTGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6909:2277..3263-

>mRNA_P-wetherbeei_contig6909.3.1 ID=mRNA_P-wetherbeei_contig6909.3.1|Name=mRNA_P-wetherbeei_contig6909.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig6909:2277..3263- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGCGGAAGGCAAGAGGAAACACTTTGGAGTAATGTTTTCCTCGCC
GGCTTTCTTCCATTTCCTTTCCTCTTCTTTCCTTCTTTTCATCCGCCCTC
TCCTTTCGCAGGACGACGTGGACCTGTTGGAATTCACGGAGGCCTACCAG
GAAGTCCTTACCGCCCTCTCGGATGCGGACAACGAAAGCTATTCGGCCGC
CTTTGCGGATTACTCCGGCGGCGGCCACTTGAAAGGGAGCCAGTTCATTG
CGAAGGCGCGCATCAGCGTGAAGATAGCAAGGGATCATTACGCCGACGCG
CTGCGGGCGCTGAAAATCGACCCATGA
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