mRNA_P-wetherbeei_contig6909.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6909.1.1
Unique NamemRNA_P-wetherbeei_contig6909.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6909.1.1 vs. uniprot
Match: A0A835YVF2_9STRA (DUF667 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF2_9STRA)

HSP 1 Score: 120 bits (301), Expect = 2.340e-31
Identity = 59/153 (38.56%), Postives = 88/153 (57.52%), Query Frame = 1
Query:    1 DCEGRPGAGSACVVDDTLTGAQCVELMGEAA-LRLPCSSVLPFLCLHLDAMGEFVSFEVTVVDDAERFRRIDVSNRRSQVVLDGDLLQLPLKCDGPGWERLNLDLDRIVRLAFGTQYLTTCLVRVGATCRLARVFFQEQPYADVALPPHLRVM 456
            +CE   G       DD   G Q +E++GE+A +  PC  V P LC HL  +  F S +V ++DD  + R +++SN RS   +DG    LP++    GW  L +DL+ + R AFGT    TC V V  +CR+A++FF+++ YAD  LP HL+ +
Sbjct:   47 ECELLGGDNEISAYDDEELGVQMLEILGESARVAFPCYCVRPILCAHLKMIDRFCSIDVDLLDDTGQHRSMNLSNHRSVATIDGAYADLPMQLTS-GWNHLAIDLNLVTRTAFGTGLSATCQVAVNGSCRVAKLFFEQEAYADAQLPGHLQAL 198          
BLAST of mRNA_P-wetherbeei_contig6909.1.1 vs. uniprot
Match: D7FPJ6_ECTSI (DUF667 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPJ6_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 3.560e-28
Identity = 60/121 (49.59%), Postives = 81/121 (66.94%), Query Frame = 1
Query:   94 LRLPCSSVLPFLCLHLDAMGEFVSFEVTVVDDAERFRRIDVSNRRSQVVLDGDLLQLPLKCDGPGWERLNLDLDRIVRLAFGTQYLTTCLVRVGATCRLARVFFQEQPYADVALPPHLRVM 456
            +RLP   + P     LD   +F SFEV +VDD +R+R ID+SN RS   +  D   LPLK +  GW+R+N+DL+R VRL FG+ YLTT  V V A+ R+A++FFQ QP++D  LP HLRV+
Sbjct:  192 MRLPKPRLRPDFLQTLD---KFFSFEVEIVDDTKRYRYIDISNTRSVADIGDDRALLPLKLED-GWQRVNIDLERTVRLVFGSSYLTTSQVTVRASARVAKLFFQSQPFSDYELPSHLRVV 308          
BLAST of mRNA_P-wetherbeei_contig6909.1.1 vs. uniprot
Match: D0MZT1_PHYIT (DUF667 domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=D0MZT1_PHYIT)

HSP 1 Score: 112 bits (281), Expect = 4.850e-28
Identity = 59/151 (39.07%), Postives = 87/151 (57.62%), Query Frame = 1
Query:    1 DCEGRPGAGSACVVDDTLTGAQCVELMG-EAALRLPCSSVLPFLCLHLDAMGEFVSFEVTVVDDAERFRRIDVSNRRSQVVLDGDLLQLPLKCDG-PGWERLNLDLDRIVRLAFGTQYLTTCLVRVGATCRLARVFFQEQPYADVALPPHL 447
            +C         CV++D       V+++G +A L  P  ++  +L L ++ M  F+ F V V+DDA+++RR  V+N RS   ++    QLPL     PGW  L +DL  +   AFGT+++TT  VRVG  CRL R+FFQ++ YAD  LP HL
Sbjct:   75 ECRVLMSGNDVCVLEDETVKEDVVQILGNDAELVFPVRNIFRYLVLFVENMDLFLDFHVEVLDDAQKYRRFTVTNTRSLARVEDSRCQLPLAFGPQPGWRYLCMDLQDLTSQAFGTRHVTTTKVRVGGHCRLLRMFFQDERYADADLPAHL 225          
BLAST of mRNA_P-wetherbeei_contig6909.1.1 vs. uniprot
Match: A0A6A3P343_9STRA (DUF667 domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3P343_9STRA)

HSP 1 Score: 110 bits (276), Expect = 6.550e-28
Identity = 56/151 (37.09%), Postives = 85/151 (56.29%), Query Frame = 1
Query:    1 DCEGRPGAGSACVVDDTLTGAQCVELMG-EAALRLPCSSVLPFLCLHLDAMGEFVSFEVTVVDDAERFRRIDVSNRRSQVVLDGDLLQLPLKCDG-PGWERLNLDLDRIVRLAFGTQYLTTCLVRVGATCRLARVFFQEQPYADVALPPHL 447
            +C         CV++D +     V+++G +A L  P  ++  +L + +  M  F+ F V  +DD +++R+  V+N RS   ++    QLPL     PGW  L +DL  I   AFGT+++TT  VRVG  CRL R+FFQ++ YAD  LP HL
Sbjct:   18 ECRCLMNGNDVCVLEDEIVKEDVVQVLGSDAELVFPTRNIFRYLVMFIKNMDLFLEFHVEALDDTQKYRQFTVTNTRSLARVEDSACQLPLAFGSHPGWRYLCMDLQDITNQAFGTRHVTTTEVRVGGNCRLLRIFFQDERYADADLPAHL 168          
BLAST of mRNA_P-wetherbeei_contig6909.1.1 vs. uniprot
Match: A0A329SK27_9STRA (DUF667 domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SK27_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.050e-27
Identity = 57/151 (37.75%), Postives = 86/151 (56.95%), Query Frame = 1
Query:    1 DCEGRPGAGSACVVDDTLTGAQCVELMG-EAALRLPCSSVLPFLCLHLDAMGEFVSFEVTVVDDAERFRRIDVSNRRSQVVLDGDLLQLPLKCDG-PGWERLNLDLDRIVRLAFGTQYLTTCLVRVGATCRLARVFFQEQPYADVALPPHL 447
            +C         CV++D       V+++G +A L  P  ++  +L + +  M  F+ F V V+DDA+++R+  V+N RS   ++    QLPL     PGW  L +DL  +   AFGT+++TT  VRVG  CRL R+FFQ++ YAD  LP HL
Sbjct:   36 ECRILMSGNDVCVLEDETVKEDVVQVLGNDAELVFPVRNIFRYLVMFVKNMDLFLEFHVEVLDDAQKYRQFTVTNTRSLARVEDSRCQLPLAFGAHPGWRYLCMDLQDLTSQAFGTRHVTTTKVRVGGNCRLLRMFFQDERYADADLPAHL 186          
BLAST of mRNA_P-wetherbeei_contig6909.1.1 vs. uniprot
Match: G4YH75_PHYSP (DUF667 domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4YH75_PHYSP)

HSP 1 Score: 105 bits (263), Expect = 2.740e-25
Identity = 54/151 (35.76%), Postives = 85/151 (56.29%), Query Frame = 1
Query:    1 DCEGRPGAGSACVVDDTLTGAQCVELMG-EAALRLPCSSVLPFLCLHLDAMGEFVSFEVTVVDDAERFRRIDVSNRRSQVVLDGDLLQLPLKCDG-PGWERLNLDLDRIVRLAFGTQYLTTCLVRVGATCRLARVFFQEQPYADVALPPHL 447
            +C         CV++D +     V+++G +A L  P  ++  +L + +  M  F+ F+V V+DD++ +R   V+N RS   ++    QLPL     PGW  L +DL  +   AFGT+++TT  VR+   CRL R+FFQ++ YAD  LP HL
Sbjct:   81 ECRCLMNGNDVCVLEDEIVKEDVVQVLGNDAELVFPTRNIFRYLVMFIKNMDLFLEFQVEVLDDSQNYRVFTVTNTRSLARVEDTACQLPLAFGSHPGWRYLCMDLQDLTNQAFGTRHVTTTEVRIRGNCRLLRMFFQDERYADADLPAHL 231          
BLAST of mRNA_P-wetherbeei_contig6909.1.1 vs. uniprot
Match: H3GJA4_PHYRM (DUF667 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJA4_PHYRM)

HSP 1 Score: 110 bits (274), Expect = 4.690e-25
Identity = 55/151 (36.42%), Postives = 89/151 (58.94%), Query Frame = 1
Query:    1 DCEGRPGAGSACVVDDTLTGAQCVELMG-EAALRLPCSSVLPFLCLHLDAMGEFVSFEVTVVDDAERFRRIDVSNRRSQVVLDGDLLQLPLKCD-GPGWERLNLDLDRIVRLAFGTQYLTTCLVRVGATCRLARVFFQEQPYADVALPPHL 447
            +C       + CV++D       V+++G +A L  P  ++  +L + +  M  F+ F+V V+DDA+++R++ V+N RS   ++    QLPL     PGW  L +DL  + + AFGT+++TT  VR+   CRL R+FFQ++ YAD  LP HL
Sbjct:  628 ECRCLMNGNNVCVLEDETVKEDVVQVLGTDAELVFPVRNIFRYLVMFIKNMDLFLEFQVEVLDDAQKYRQLTVTNTRSLARVEDSRCQLPLAFGMQPGWRYLCMDLQDVTQQAFGTRHVTTTEVRIAGNCRLLRMFFQDERYADADLPAHL 778          
BLAST of mRNA_P-wetherbeei_contig6909.1.1 vs. uniprot
Match: A0A662XQD2_9STRA (DUF667 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XQD2_9STRA)

HSP 1 Score: 105 bits (262), Expect = 6.330e-25
Identity = 56/139 (40.29%), Postives = 83/139 (59.71%), Query Frame = 1
Query:   37 VVDDTLTGAQCVELMG-EAALRLPCSSVLPFLCLHLDAMGEFVSFEVTVVDDAERFRRIDVSNRRSQVVLDGDLLQLPLKCDG-PGWERLNLDLDRIVRLAFGTQYLTTCLVRVGATCRLARVFFQEQPYADVALPPHL 447
            V++D       V+++G +A L  P  S+  +L L +  +  F+ F V V+DD++ +R+  V+N RS   +D    QLPL     PGW  L +DL  + R AFGT+++TT  VRVG  CRL R+FFQ++ YAD  LP +L
Sbjct:  117 VLEDETVQEGVVQVLGTDAELVFPVRSIFRYLVLFVKNLELFLEFHVQVLDDSQTYRQFTVTNARSLARVDLSTCQLPLSFGSQPGWRYLCMDLQELTRQAFGTRHVTTTEVRVGGNCRLLRLFFQDERYADADLPAYL 255          
BLAST of mRNA_P-wetherbeei_contig6909.1.1 vs. uniprot
Match: A0A485LGF8_9STRA (Aste57867_21039 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LGF8_9STRA)

HSP 1 Score: 106 bits (265), Expect = 8.530e-25
Identity = 58/144 (40.28%), Postives = 84/144 (58.33%), Query Frame = 1
Query:   37 VVDDTLTGAQCVELMG-EAALRLPCSSVLPFLCLHLDAMGEFVSFEVTVVDDAERFRRIDVSNRRSQVVLDGDLLQLPLKCD--GPGWERLNLDLDRIVRLAFGTQYLTTCLVRVGATCRLARVFFQEQPYADVALPPHLRVMQ 459
            VVDD       VE+ G +A L L C SV+ +L L    M  F +FEV ++DD + +R   ++N RS   + G+  Q+PL     G GW  + LD+ R+   AFGTQ++ T  VR+ ATCRL R +FQE  Y+D  LP +L +++
Sbjct:  188 VVDDVEAQQPAVEIRGSDARLVLQCHSVMRYLVLFAKNMDAFFAFEVEMLDDKKIYREFHITNARSLARVTGNACQMPLAFGRGGSGWRYICLDVQRMCLEAFGTQHVATVQVRIHATCRLLRAYFQEIEYSDAELPSYLALLE 331          
BLAST of mRNA_P-wetherbeei_contig6909.1.1 vs. uniprot
Match: A0A0N7L3W7_PLAHL (Transcription factor IIB n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L3W7_PLAHL)

HSP 1 Score: 109 bits (272), Expect = 8.600e-25
Identity = 57/151 (37.75%), Postives = 83/151 (54.97%), Query Frame = 1
Query:    1 DCEGRPGAGSACVVDDTLTGAQCVELMG-EAALRLPCSSVLPFLCLHLDAMGEFVSFEVTVVDDAERFRRIDVSNRRSQVVLDGDLLQLPLKCDG-PGWERLNLDLDRIVRLAFGTQYLTTCLVRVGATCRLARVFFQEQPYADVALPPHL 447
            +C         CV++D       V+++G +  L  P S+   +L + +  M  F  F+V ++DDA ++R   V+N RS   ++G   QLPL     P W  L +DL  +   AFGTQ++TT  VRVG  CRL R+FFQ++ YAD  LP HL
Sbjct:  580 ECRSLMTGNDVCVLEDETVKEDVVQVLGNDVELVFPVSNSFRYLVMFIKNMDLFFEFQVEILDDAHKYRSFTVTNTRSLARIEGLRCQLPLAFGTHPSWRYLCMDLQDLTNQAFGTQHVTTTKVRVGGNCRLLRIFFQDERYADAELPAHL 730          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6909.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YVF2_9STRA2.340e-3138.56DUF667 domain-containing protein n=1 Tax=Tribonema... [more]
D7FPJ6_ECTSI3.560e-2849.59DUF667 domain-containing protein n=1 Tax=Ectocarpu... [more]
D0MZT1_PHYIT4.850e-2839.07DUF667 domain-containing protein n=10 Tax=Phytopht... [more]
A0A6A3P343_9STRA6.550e-2837.09DUF667 domain-containing protein n=3 Tax=Phytophth... [more]
A0A329SK27_9STRA2.050e-2737.75DUF667 domain-containing protein n=1 Tax=Phytophth... [more]
G4YH75_PHYSP2.740e-2535.76DUF667 domain-containing protein n=3 Tax=Phytophth... [more]
H3GJA4_PHYRM4.690e-2536.42DUF667 domain-containing protein n=1 Tax=Phytophth... [more]
A0A662XQD2_9STRA6.330e-2540.29DUF667 domain-containing protein n=2 Tax=Nothophyt... [more]
A0A485LGF8_9STRA8.530e-2540.28Aste57867_21039 protein n=1 Tax=Aphanomyces stella... [more]
A0A0N7L3W7_PLAHL8.600e-2537.75Transcription factor IIB n=1 Tax=Plasmopara halste... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6909contigP-wetherbeei_contig6909:624..1650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog42099.EPrPV00000013815
PFAMsDUF667
Model size465
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.37e-32
EggNOG OGsKOG3213@1|root,KOG3213@2759|Eukaryota,1MBEQ@121069|Pythiales
Ec32 ortholog descriptionCilia/flagella-associated protein 20
Ec32 orthologEc-12_000830.1
DescriptionSource PGD
Cds size465
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186945.1975868-CDS-P-wetherbeei_contig6909:623..7941683186945.1975868-CDS-P-wetherbeei_contig6909:623..794Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6909 624..794 +
1683186945.2080483-CDS-P-wetherbeei_contig6909:1043..12021683186945.2080483-CDS-P-wetherbeei_contig6909:1043..1202Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6909 1044..1202 +
1683186945.2206693-CDS-P-wetherbeei_contig6909:1515..16501683186945.2206693-CDS-P-wetherbeei_contig6909:1515..1650Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6909 1516..1650 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6909.1.1prot_P-wetherbeei_contig6909.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6909 624..1650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6909.1.1

>prot_P-wetherbeei_contig6909.1.1 ID=prot_P-wetherbeei_contig6909.1.1|Name=mRNA_P-wetherbeei_contig6909.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=155bp
DCEGRPGAGSACVVDDTLTGAQCVELMGEAALRLPCSSVLPFLCLHLDAM
GEFVSFEVTVVDDAERFRRIDVSNRRSQVVLDGDLLQLPLKCDGPGWERL
NLDLDRIVRLAFGTQYLTTCLVRVGATCRLARVFFQEQPYADVALPPHLR
VMQK*
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mRNA from alignment at P-wetherbeei_contig6909:624..1650+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6909.1.1 ID=mRNA_P-wetherbeei_contig6909.1.1|Name=mRNA_P-wetherbeei_contig6909.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1027bp|location=Sequence derived from alignment at P-wetherbeei_contig6909:624..1650+ (Phaeothamnion wetherbeei SAG_119_79)
GATTGCGAGGGACGGCCAGGGGCCGGCAGCGCGTGCGTTGTAGACGATAC GTTAACGGGAGCGCAATGCGTGGAGCTGATGGGGGAGGCGGCGCTGCGGC TGCCGTGCTCGTCCGTGCTGCCGTTTCTCTGCCTCCACCTCGACGCCATG GGCGAGTTCGTATCTTTTGAGGTCAGGAGCAGCGATGGGAGAGAGATGTT CGGGCACGCAAGCCTCTCAGCAAAGGTCCTGCCGTTCTCTTCTTTCTTGT TATCCCTCTTTCTTTCCTGTACCTCGTGTCCCGCGTACTTGTTAGCCTTT AGCGTACGCTCCTTCAAACTCTTAGTCCGAAGCAGAGCTCTCTTGATGTT TATGCTGTTTTGCCGCGGCAAACAGGACCATTCCCTCTTCGCCCCCCCGA CAAACACCAAAACACGACAGGTGACCGTAGTGGACGACGCGGAGCGATTC CGGCGCATTGACGTGAGCAACCGGCGGTCGCAGGTGGTCCTCGACGGCGA CCTGCTGCAGCTCCCACTCAAGTGCGACGGGCCCGGCTGGGAGCGCCTCA ACTTGGACCTCGATCGGATTGTACGACTGGTGGGTCGGTCGGGAGCCGGA GGGACGCAGAAGAGCCGGAATAAGACGTGGTACAGGTTGCATTGCATGAG GATTGGGAGCTACGGCACTGATTTAGCAAGGTCTTGCAATCGACTTCAGT AACACCACTGCGTTGTCCCTTTCTCCTTGCTGGGTTTGTCCGGCGCCCTG GCACCAGAAAGGCCAGCAATTCATAGAGCTGCCTTAACCTTTTCGCTGGT CGTTACCAAAAGTATACAGCGCTGGCGCATTTCTTTTTTTGACACTCTGG CACCTCCGTTTGTTCCCAATCTTGCGTGCCGGCTGTTGTCAGGCCTTTGG GACACAATACCTGACGACGTGCCTGGTGCGAGTCGGGGCGACATGTCGCC TGGCGCGGGTCTTTTTCCAGGAACAGCCGTACGCCGACGTGGCGCTGCCG CCGCACCTCCGGGTAATGCAAAAATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6909:624..1650+

>mRNA_P-wetherbeei_contig6909.1.1 ID=mRNA_P-wetherbeei_contig6909.1.1|Name=mRNA_P-wetherbeei_contig6909.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig6909:624..1650+ (Phaeothamnion wetherbeei SAG_119_79)
GATTGCGAGGGACGGCCAGGGGCCGGCAGCGCGTGCGTTGTAGACGATAC
GTTAACGGGAGCGCAATGCGTGGAGCTGATGGGGGAGGCGGCGCTGCGGC
TGCCGTGCTCGTCCGTGCTGCCGTTTCTCTGCCTCCACCTCGACGCCATG
GGCGAGTTCGTATCTTTTGAGGTGACCGTAGTGGACGACGCGGAGCGATT
CCGGCGCATTGACGTGAGCAACCGGCGGTCGCAGGTGGTCCTCGACGGCG
ACCTGCTGCAGCTCCCACTCAAGTGCGACGGGCCCGGCTGGGAGCGCCTC
AACTTGGACCTCGATCGGATTGTACGACTGGCCTTTGGGACACAATACCT
GACGACGTGCCTGGTGCGAGTCGGGGCGACATGTCGCCTGGCGCGGGTCT
TTTTCCAGGAACAGCCGTACGCCGACGTGGCGCTGCCGCCGCACCTCCGG
GTAATGCAAAAATGA
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