mRNA_P-wetherbeei_contig6907.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig6907.3.1 vs. uniprot
Match: A0A6I3GER1_9ACTN (TetR family transcriptional regulator n=3 Tax=root TaxID=1 RepID=A0A6I3GER1_9ACTN) HSP 1 Score: 97.1 bits (240), Expect = 1.240e-21 Identity = 51/192 (26.56%), Postives = 107/192 (55.73%), Query Frame = 1
Query: 22 TRDRILAATVAVLERDGPDAVRVLSIAEDASVTTGAIYHHFDNRRSLLVAAQLQRFASAIPEDVRLIVGLLTSAQSADDLRAGFAAITAVAYLPERASNRAARSEVVSAARTNPELAAALSQQQHGYVVSVREAVASAQARGVMRADTDPHAMAVLMMALPFGFQLADIDREEAVDLTSWAVVVGRVVESFL 597
T+ ++A TV++++ GP V + +++ ++ G++YHHF++ +++AAQ++RFA + ED+ + +L +A S +DL ++ +A+ ERA R R E++++AR + ++ AL Q S + + Q+R + + P A+AV + A G + D E +D+ +W ++ R++ + +
Sbjct: 7 TKSHLIATTVSLIDEFGPQGFTVDQLLDNSKISKGSLYHHFEDFHDVIIAAQVERFAQYVEEDIAGVTQVLLAATSREDLLNRLDTVSLIAHSEERAKRRGDRMEILTSARHSEKMKLALGPVQARLTASFADLIREMQSRQWVTTEISPEAVAVFIQAYSLGLVVNDASSEH-IDMAAWHQLISRMLRTLI 197
BLAST of mRNA_P-wetherbeei_contig6907.3.1 vs. uniprot
Match: A0A7K0ZCC0_9ACTN (TetR family transcriptional regulator n=2 Tax=root TaxID=1 RepID=A0A7K0ZCC0_9ACTN) HSP 1 Score: 85.5 bits (210), Expect = 3.040e-17 Identity = 55/194 (28.35%), Postives = 99/194 (51.03%), Query Frame = 1
Query: 22 TRDRILAATVAVLERDGPDAVRVLSIAEDASVTTGAIYHHFDNRRSLLVAAQLQRFASAIPEDVRLIVGLLTSAQSADDLRAGFAAITAVAYLPERASNRAARSEVVSAARTNPELAAALSQQQHGYVVSVREAVASAQARGVMRADTDPHAMAVLMMALPFGFQLADIDREEAVDLTSWAVVVGRVVESFLAG 603
T+ +L +++++ GP V ++ E + ++ G++YHHF + ++ AQ+ RF+ + +D+ L+VGLL SA S +DL + FA I A LP R + R+ R+ ++ AR + A L+ +Q + + Q RG + D D +A + A GF L D + + + W+ + SF+ G
Sbjct: 4 TKGLLLETAISLIDEFGPQGFTVETLLETSKISKGSLYHHFHDFSDVIEQAQVARFSRYVDQDIMLLVGLLKSATSREDLESKFAMIVQGAGLPGRDAARSDRAAILGMARHSKNFAEGLAIEQQRVTDVLTDIAREMQERGWINKDLDAAVVATFVQAYSMGFVLND-NTTNPISIERWSAFI-----SFMLG 191
BLAST of mRNA_P-wetherbeei_contig6907.3.1 vs. uniprot
Match: A0A6L6CFY0_9ACTN (TetR family transcriptional regulator n=4 Tax=root TaxID=1 RepID=A0A6L6CFY0_9ACTN) HSP 1 Score: 84.3 bits (207), Expect = 1.530e-16 Identity = 54/196 (27.55%), Postives = 98/196 (50.00%), Query Frame = 1
Query: 10 TAEGTRDRILAATVAVLERDGPDAVRVLSIAEDASVTTGAIYHHFDNRRSLLVAAQLQRFASAIPEDVRLIVGLLTSAQSADDLRAGFAAITAVAYLPERASNRAARSEVVSAARTNPELAAALSQQQHGYVVSVREAVASAQARGVMRADTDPHAMAVLMMALPFGFQLADIDREEAVDLTSWAVVVGRVVESFL 597
T T+ +L V++++ GP V ++ E + ++ G++YHHF + ++ AQ+ RF+ + ED+ L+V LL S+ S +DL+ FA I A +P R RA R+ ++ AR + + A L+ +Q + + Q RG + D D +A + A GF L D + + + W+ + ++ L
Sbjct: 30 TMHPTKALLLETAVSLIDEFGPQGFTVETLLETSKISKGSLYHHFHDFSDVIEQAQVARFSRYVDEDIALLVDLLRSSTSREDLQKKFALIVQGAGMPGREVARADRAAILGMARHSKKFAEGLALEQQRVTDVLADIAREMQERGWINKDIDGAVVATFVQAYSMGFVLND-NTTNPISIEQWSSFISMMLSKIL 224
BLAST of mRNA_P-wetherbeei_contig6907.3.1 vs. uniprot
Match: A0A6I2X251_9ACTN (TetR family transcriptional regulator n=2 Tax=root TaxID=1 RepID=A0A6I2X251_9ACTN) HSP 1 Score: 84.0 bits (206), Expect = 1.570e-16 Identity = 54/147 (36.73%), Postives = 78/147 (53.06%), Query Frame = 1
Query: 31 RILAATVAVLERDGPDAVRVLSIAEDASVTTGAIYHHFDNRRSLLVAAQLQRFASAIPEDVRLIVGLLTSAQSADDLRAGFAAITAVAYLPERASNRAARSEVVSAARTNPELAAALSQQQHGYVVSVREAVASAQARGVMRADTDP 471
R+LAA V+E G ++RV I E A V +Y HF NR L+ +A L RF + ++ + L A S ++ RA F + A P R R R EV+ +A + PEL+ +S+ Q V + +ASAQARG +RAD +P
Sbjct: 16 RLLAAASEVIETSGEASLRVQEIVEIAGVQAPVLYRHFGNREGLVQSAHLARFIRELADEGEMFSILAGQADSKEEFRAHFDTLVHAAAHPSRRERRRTRLEVLGSAMSRPELSELISRVQASTYSKVVDTIASAQARGWVRADVEP 162
BLAST of mRNA_P-wetherbeei_contig6907.3.1 vs. uniprot
Match: A0A6L6D8T7_9ACTN (TetR family transcriptional regulator n=4 Tax=root TaxID=1 RepID=A0A6L6D8T7_9ACTN) HSP 1 Score: 65.9 bits (159), Expect = 9.960e-10 Identity = 54/188 (28.72%), Postives = 89/188 (47.34%), Query Frame = 1
Query: 22 TRDRILAATVAVLERDGPDAVRVLSIAEDASVTTGAIYHHFDNRRSLLVAAQLQRFASAIPEDVRLIVGLLTSAQSADDLRAGFAAITAVAYLPERASNRAARSEVVSAARTNPELAAALSQQQHGYVVSVREAVASAQARGVMRADTDPHAMAVLMMALPFGFQLADIDREEAVDLTSWAVVVGRVV 585
TR+R+L AT AV+++ G AVR+ I + ++T +IYH F +R L+ AAQ RF+ E L +S DL + + P+R + R +R V+ A PEL+ L+ Q V + + AQA+G +R D +P A + + +L ++ + W V+ R +
Sbjct: 7 TRERLLKATAAVIDKGGESAVRIRDITKACTITAPSIYHFFGSREGLIDAAQAYRFSRGQRELGLAFSTALYKCRSKKDLTELAHRFLDLMFAPDRRATRNSRLNVLGNAIYRPELSKELAVAQDLSNKIVGDPLRFAQAKGWVRDDFNPEMFAAWLNGVVNSRRLIEMGGNHPL-ADEWDVIAKRSI 193
BLAST of mRNA_P-wetherbeei_contig6907.3.1 vs. uniprot
Match: A0A7K0VVK0_9ACTN (TetR family transcriptional regulator n=2 Tax=root TaxID=1 RepID=A0A7K0VVK0_9ACTN) HSP 1 Score: 61.6 bits (148), Expect = 3.600e-8 Identity = 48/188 (25.53%), Postives = 89/188 (47.34%), Query Frame = 1
Query: 22 TRDRILAATVAVLERDGPDAVRVLSIAEDASVTTGAIYHHFDNRRSLLVAAQLQRFASAIPEDVRLIVGLLTSAQSADDLRAGFAAITAVAYLPERASNRAARSEVVSAARTNPELAAALSQQQHGYVVSVREAVASAQARGVMRADTDPHAMAVLMMALPFGFQLADIDREEAVDLTSWAVVVGRVV 585
TR+R+L AT A +++ G AVR+ + + ++T +IYH F +R L+ AAQ RF+ + + ++ A + P+R + R R V+ A P+L+ L++ Q V V EA+ AQ++G +R D + A ++ + +L +++ + W V+ R +
Sbjct: 9 TRERLLKATAATIDKGGEGAVRIRDLTKSCNITAPSIYHFFGSREGLIDAAQAYRFSRGQLQLGDAFASAIHQCKNKTQFVELAHRFLATMFSPDRRAVRNTRLNVLGNAVNRPDLSKELARVQEESNVVVGEALRYAQSKGWVRDDFNCEMFAAWLVGMVNSRRLIEMNGNHPLG-DEWDVIAKRSI 195
BLAST of mRNA_P-wetherbeei_contig6907.3.1 vs. uniprot
Match: A0A6I2VTS4_9ACTN (TetR family transcriptional regulator n=2 Tax=root TaxID=1 RepID=A0A6I2VTS4_9ACTN) HSP 1 Score: 59.3 bits (142), Expect = 1.990e-7 Identity = 43/152 (28.29%), Postives = 72/152 (47.37%), Query Frame = 1
Query: 46 TVAVLERDGPDAVRVLSIAEDASVTTGAIYHHFDNRRSLLVAAQLQRFASAIPEDVRLIVGLLTSAQSADDLRAGFAAITAVAYLPERASNRAARSEVVSAARTNPELAAALSQQQHGYVVSVREAVASAQARGVMRADTDPHAMAVLMMAL 501
T+AV+E DG + VRV+ IA+ V ++H F NR SL+ AAQ++R+ + + A++ +D RA + P ++ R +R V +A EL AL+ + + ++ A A+ G + D A A M+ L
Sbjct: 14 TIAVIETDGEEGVRVVDIAKHVGVAVTTLFHLFGNRDSLIRAAQIERYVRGLANMIEEFDVATAIARTKEDFRAVVIRMVRSEIAPINSAIRQSRQGVFGSAYGRRELTTALTDSHNSMCLGLQVAFERAKENGWIEPSLDSLATAYWMLGL 165
BLAST of mRNA_P-wetherbeei_contig6907.3.1 vs. uniprot
Match: A0A6L6CUM7_9ACTN (TetR family transcriptional regulator (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A6L6CUM7_9ACTN) HSP 1 Score: 57.0 bits (136), Expect = 3.200e-7 Identity = 37/107 (34.58%), Postives = 55/107 (51.40%), Query Frame = 1
Query: 22 TRDRILAATVAVLERDGPDAVRVLSIAEDASVTTGAIYHHFDNRRSLLVAAQLQRFASAIPEDVRLIVGLLTSAQSADDLRAGFAAITAVAYLPERASNRAARSEVV 342
TR+R+L AT AV+++ G AVR+ I + ++T +IYH F +R L+ AAQ RF+ E L +S DL + + PER S R +R V+
Sbjct: 7 TRERLLKATAAVIDKGGESAVRIRDITKACTITAPSIYHFFGSREGLIDAAQAYRFSRGQRELSLAFSTALYKCRSKKDLTELAHRFLDLMFAPERRSTRNSRLNVL 113
BLAST of mRNA_P-wetherbeei_contig6907.3.1 vs. uniprot
Match: A0A7V9NTU9_9ACTN (TetR/AcrR family transcriptional regulator n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9NTU9_9ACTN) HSP 1 Score: 58.2 bits (139), Expect = 5.010e-7 Identity = 57/205 (27.80%), Postives = 90/205 (43.90%), Query Frame = 1
Query: 7 VTAEGTRDRILAATVAVLERDGPDAVRVLSIAEDASVTTGAIYHHFDNRRSLLVAAQLQRFASAIPEDVRLIVGLLTSAQSADDLRAGFAAITAVAYLPERASNRAARS--------EVVSAARTNPELAAALSQQQHGYVVSVREAVASAQARGVMRADTDPHAMAVLMMALPFGFQLADIDREEAVDLTSWAVVVGRVVESFL 597
VTA+ TR+R+LAA +V R G D + +A +A V++GAIY HF ++ L AA LQ S + LL + + V +L +R A R + + AAR +P++AA L + + + S Q G++ + A A ++ L G L +VD WA ++ VV F+
Sbjct: 7 VTADQTRERMLAAAASVFARGGYDGASIAELASEAGVSSGAIYSHFGSKAELF-AATLQTHGSTE------VAALLAFGATPNP----------VEFLTQRGRGLAHRRPEEGSLLVQAIVAARRHPDVAALLISAFSEREGRIADMLRSGQVDGLVDSGVPAAAAARFVLMLALGSLLVAAMELPSVDPDDWAQMITDVVSRFI 194
BLAST of mRNA_P-wetherbeei_contig6907.3.1 vs. uniprot
Match: A0A6J6VI75_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J6VI75_9ZZZZ) HSP 1 Score: 57.4 bits (137), Expect = 1.150e-6 Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = 1
Query: 16 EGTRDRILAATVAVLERDGPDAVRVLSIAEDASVTTGAIYHHFDNRRSLLVAAQ-----------LQRFASAI--PEDVRLIVGLLTSA 243
E + DR+LAAT+A+L+ GP AV V ++A A + G++YH F +R LL+AAQ Q FA A P+D R + L T+A
Sbjct: 10 ESSADRMLAATLALLDEGGPTAVTVAAVARAAGTSNGSLYHRFGDRHGLLLAAQSRVLGTIEAETAQAFAVADTEPDDERAVALLATAA 98 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6907.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig6907.3.1 >prot_P-wetherbeei_contig6907.3.1 ID=prot_P-wetherbeei_contig6907.3.1|Name=mRNA_P-wetherbeei_contig6907.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=202bp GAVTAEGTRDRILAATVAVLERDGPDAVRVLSIAEDASVTTGAIYHHFDNback to top mRNA from alignment at P-wetherbeei_contig6907:2293..2898- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig6907.3.1 ID=mRNA_P-wetherbeei_contig6907.3.1|Name=mRNA_P-wetherbeei_contig6907.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=606bp|location=Sequence derived from alignment at P-wetherbeei_contig6907:2293..2898- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig6907:2293..2898- >mRNA_P-wetherbeei_contig6907.3.1 ID=mRNA_P-wetherbeei_contig6907.3.1|Name=mRNA_P-wetherbeei_contig6907.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=606bp|location=Sequence derived from alignment at P-wetherbeei_contig6907:2293..2898- (Phaeothamnion wetherbeei SAG_119_79)back to top |