mRNA_P-wetherbeei_contig69.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig69.3.1
Unique NamemRNA_P-wetherbeei_contig69.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig69.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig69contigP-wetherbeei_contig69:6199..6954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size740
Hectar predicted targeting categoryother localisation
Exons2
Cds size375
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186944.3766067-UTR-P-wetherbeei_contig69:6198..62861683186944.3766067-UTR-P-wetherbeei_contig69:6198..6286Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig69 6199..6286 +
1683186944.4015698-UTR-P-wetherbeei_contig69:6677..69541683186944.4015698-UTR-P-wetherbeei_contig69:6677..6954Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig69 6678..6954 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186944.385228-CDS-P-wetherbeei_contig69:6286..65221683186944.385228-CDS-P-wetherbeei_contig69:6286..6522Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig69 6287..6522 +
1683186944.3932333-CDS-P-wetherbeei_contig69:6538..66771683186944.3932333-CDS-P-wetherbeei_contig69:6538..6677Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig69 6539..6677 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig69.3.1prot_P-wetherbeei_contig69.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig69 6287..6677 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig69.3.1

>prot_P-wetherbeei_contig69.3.1 ID=prot_P-wetherbeei_contig69.3.1|Name=mRNA_P-wetherbeei_contig69.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=125bp
MAEALLPVVAFDAKWREEEYPAWSKKALNTAGAAPGQARVWKLLSGELQL
VALPGDLGAAVISANERNELCREAERQAAASRPTTRRPRCGTASPMRSRK
AAPSSGLSSRRTSQNSRARRSSRH*
back to top

mRNA from alignment at P-wetherbeei_contig69:6199..6954+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig69.3.1 ID=mRNA_P-wetherbeei_contig69.3.1|Name=mRNA_P-wetherbeei_contig69.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=756bp|location=Sequence derived from alignment at P-wetherbeei_contig69:6199..6954+ (Phaeothamnion wetherbeei SAG_119_79)
GTTGATAGGTTGTGAGCCTGAACAGCTGAGTGTAGACGCTGTTGTCTCCT
CAGGAAGCTCTCTTTCTTGTGCTACCTTTTTGCACGAGATGGCAGAAGCA
CTCTTGCCAGTCGTCGCGTTTGACGCGAAGTGGAGGGAAGAGGAATATCC
GGCCTGGTCGAAGAAGGCTCTCAACACCGCTGGTGCGGCGCCTGGCCAGG
CTCGTGTGTGGAAACTACTGAGTGGCGAACTTCAACTGGTCGCCCTTCCC
GGCGACCTCGGAGCTGCGGTGATATCGGCGAACGAGCGCAACGAGCTCTG
CCGGGAAGCCGAGCGCCAAGCTGCGTTTGGCCTGGTCCAGGGCATCGAGA
CCAACGACGAGGCGCCCTCGGTGTGGGACGGCCTCACCGATGCGGAGCAG
AAAAGCGGCTCCGTCATCTGGGCTAAGCTCAAGGCGCACTTCACAAAACA
GTCGGGCGCGGCGGTCGTCAAGGCATTGAAGCTGTTCACCGAGTTCGCTC
GTCCGGCGGAAAATGTGCCCCCTATCGTCATCCGCACCTCCTTCAACATG
ATCAGACGCCAAAAGATTTCCCTCGGCTGCAGGCAGAACGACGCAACCGA
GCTGTCGACTCTCCTGTCTGCGCTTTCCCAGTCCAACCGCTGGCAGGGCC
TCGCCCGCCGCTGTGTTGAGACCAGACTGACGACGGCGGACGCGGTGTTC
ATGCCATGAAGGAAGCATGGACACCGCCGGAGCTGCTGCATGCGCTCCCG
GCATAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig69:6199..6954+

>mRNA_P-wetherbeei_contig69.3.1 ID=mRNA_P-wetherbeei_contig69.3.1|Name=mRNA_P-wetherbeei_contig69.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig69:6199..6954+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGAAGCACTCTTGCCAGTCGTCGCGTTTGACGCGAAGTGGAGGGA
AGAGGAATATCCGGCCTGGTCGAAGAAGGCTCTCAACACCGCTGGTGCGG
CGCCTGGCCAGGCTCGTGTGTGGAAACTACTGAGTGGCGAACTTCAACTG
GTCGCCCTTCCCGGCGACCTCGGAGCTGCGGTGATATCGGCGAACGAGCG
CAACGAGCTCTGCCGGGAAGCCGAGCGCCAAGCTGCGGCATCGAGACCAA
CGACGAGGCGCCCTCGGTGTGGGACGGCCTCACCGATGCGGAGCAGAAAA
GCGGCTCCGTCATCTGGGCTAAGCTCAAGGCGCACTTCACAAAACAGTCG
GGCGCGGCGGTCGTCAAGGCATTGA
back to top