mRNA_P-wetherbeei_contig6897.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6897.1.1
Unique NamemRNA_P-wetherbeei_contig6897.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6897.1.1 vs. uniprot
Match: D7FWX3_ECTSI (Axonemal 1-beta dynein heavy chain dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX3_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 3.360e-59
Identity = 86/124 (69.35%), Postives = 110/124 (88.71%), Query Frame = 1 
Query:    1 RGLFERHKLLFSLQLCFRIFQRQNKIPPEEYAFLLYGGVVVDRAARRANPCRDWLDEAAWDNISELDKLPALTGVAASFETAPRDWRAWYVASQPEEAPLPGDWETKCSDLQRLCVLRSLRPDR 372
            RGLFERHKLLFSLQLCFRI +++ K+P +E+ FLLYGG+VV+R+ +R NPC+DW+DE AWDNI+ELD L A +G+A SFE +PR+W+AW+++++PEE+PLPGDWE KCSDLQRLCVLRSLR DR
Sbjct: 3991 RGLFERHKLLFSLQLCFRILEQEKKVPADEFNFLLYGGIVVERSGQRPNPCKDWVDETAWDNITELDNLGAFSGLALSFEQSPREWKAWFLSAKPEESPLPGDWENKCSDLQRLCVLRSLRADR 4114
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BLAST of mRNA_P-wetherbeei_contig6897.1.1 vs. uniprot
Match: A0A7S1XUA6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUA6_9STRA)

HSP 1 Score: 193 bits (491), Expect = 8.090e-55
Identity = 80/124 (64.52%), Postives = 105/124 (84.68%), Query Frame = 1 
Query:    1 RGLFERHKLLFSLQLCFRIFQRQNKIPPEEYAFLLYGGVVVDRAARRANPCRDWLDEAAWDNISELDKLPALTGVAASFETAPRDWRAWYVASQPEEAPLPGDWETKCSDLQRLCVLRSLRPDR 372
            RGLFERHKLLFSLQLCF+I Q  NK+P +E+ +  +GGVVVDRA +R NPC +W++EAAWDN++ELDKL ALTG+ +SFE  PRDW+AWY+++ PE+  LPGDWE KC++LQ++C+LR+LR DR
Sbjct:  296 RGLFERHKLLFSLQLCFKILQNDNKLPKDEFDYFCFGGVVVDRADQRPNPCEEWVNEAAWDNVTELDKLGALTGLVSSFEQIPRDWKAWYLSNAPEDERLPGDWENKCTNLQKMCILRALRVDR 419
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BLAST of mRNA_P-wetherbeei_contig6897.1.1 vs. uniprot
Match: A0A835Z4V1_9STRA (Dynein heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V1_9STRA)

HSP 1 Score: 185 bits (469), Expect = 8.600e-52
Identity = 84/127 (66.14%), Postives = 105/127 (82.68%), Query Frame = 1 
Query:    1 RGLFERHKLLFSLQLCFRIFQRQNKIPPEEYAFLLYGG-VVVDRAARRANPCRDWLDEAAWDNISELDKL--PALTGVAASFETAPRDWRAWYVASQPEEAPLPGDWETKCSDLQRLCVLRSLRPDR 372
            RGLFE+HKLLF+LQLC RI  R  K+PPEE+AF L+GG  V DRAA+RANP RDW+D AAWD+++ELD+    A  G+AASFE APRDWRAW+++++PE APLPG+W+ + SDLQRLCVLR+LR DR
Sbjct: 3836 RGLFEQHKLLFALQLCLRILARAGKVPPEEFAFFLHGGGAVADRAAQRANPARDWIDTAAWDSVTELDRGVGAAFGGLAASFEQAPRDWRAWFLSAKPEAAPLPGEWDARLSDLQRLCVLRALRADR 3962
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BLAST of mRNA_P-wetherbeei_contig6897.1.1 vs. uniprot
Match: F0YMC7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMC7_AURAN)

HSP 1 Score: 182 bits (463), Expect = 5.460e-51
Identity = 75/124 (60.48%), Postives = 99/124 (79.84%), Query Frame = 1 
Query:    1 RGLFERHKLLFSLQLCFRIFQRQNKIPPEEYAFLLYGGVVVDRAARRANPCRDWLDEAAWDNISELDKLPALTGVAASFETAPRDWRAWYVASQPEEAPLPGDWETKCSDLQRLCVLRSLRPDR 372
            RGLFE+HKLLF+LQLC RI   +NKIP +E+ F  +GGVVVDR+ +R NPC +W+D   WDNI+ELD +PA  G+A++FE   RDWRAW+ +S+PEE PLPGDWE K ++LQR+C++R+LR DR
Sbjct: 1518 RGLFEQHKLLFALQLCLRIMTSENKIPKQEFDFFCHGGVVVDRSEQRPNPCPEWIDAGTWDNITELDNIPAFMGIASAFEQGHRDWRAWFTSSKPEETPLPGDWENKVTELQRMCIIRALRLDR 1641
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BLAST of mRNA_P-wetherbeei_contig6897.1.1 vs. uniprot
Match: A0A8J2WYK5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WYK5_9STRA)

HSP 1 Score: 177 bits (449), Expect = 4.250e-49
Identity = 72/124 (58.06%), Postives = 97/124 (78.23%), Query Frame = 1 
Query:    1 RGLFERHKLLFSLQLCFRIFQRQNKIPPEEYAFLLYGGVVVDRAARRANPCRDWLDEAAWDNISELDKLPALTGVAASFETAPRDWRAWYVASQPEEAPLPGDWETKCSDLQRLCVLRSLRPDR 372
            RGLFER KLLF+LQLC RI   +NK+P +E+ FL YGG  ++RA +R NPC +W+D  AWDNI+ LD +PA  G+A++FE   RDWRAW+ +S+PEE PLPGDWE K +++QR+C++R+LR DR
Sbjct: 3767 RGLFERDKLLFALQLCLRIMTSENKVPKQEFDFLCYGGAGIERADQRPNPCPEWIDAGAWDNITALDSIPACMGIASAFEQGQRDWRAWFTSSEPEETPLPGDWENKVTEMQRICIIRALRLDR 3890
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BLAST of mRNA_P-wetherbeei_contig6897.1.1 vs. uniprot
Match: A0A7S1CJP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CJP2_9STRA)

HSP 1 Score: 175 bits (444), Expect = 6.800e-49
Identity = 73/123 (59.35%), Postives = 96/123 (78.05%), Query Frame = 1 
Query:    4 GLFERHKLLFSLQLCFRIFQRQNKIPPEEYAFLLYGGVVVDRAARRANPCRDWLDEAAWDNISELDKLPALTGVAASFETAPRDWRAWYVASQPEEAPLPGDWETKCSDLQRLCVLRSLRPDR 372
            GLFERHKLL SLQ+C +  QR+ K+P EE+ F L GG+V+DR  +R+NP  DWLD  AWDNI+ELDKL A  G+ +SF+  PRDW+ WY+++ PE  PLPG+W++KCS+LQ + +LRSLRPDR
Sbjct:    1 GLFERHKLLLSLQICVKKLQREGKVPAEEWGFFLRGGLVMDREEQRSNPVSDWLDPQAWDNITELDKLRAFGGIVSSFDQTPRDWKRWYLSAAPENEPLPGEWDSKCSELQSMIILRSLRPDR 123
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BLAST of mRNA_P-wetherbeei_contig6897.1.1 vs. uniprot
Match: UPI000F5546F9 (dynein heavy chain 2, axonemal-like n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F5546F9)

HSP 1 Score: 172 bits (436), Expect = 2.400e-47
Identity = 72/124 (58.06%), Postives = 92/124 (74.19%), Query Frame = 1 
Query:    1 RGLFERHKLLFSLQLCFRIFQRQNKIPPEEYAFLLYGGVVVDRAARRANPCRDWLDEAAWDNISELDKLPALTGVAASFETAPRDWRAWYVASQPEEAPLPGDWETKCSDLQRLCVLRSLRPDR 372
            RGLFERHKLLFS Q+C +I +   K+  +EY F L GGVV+DR  +  NPC  WL+EA+WDNI+ELDKLP   G+  SFE  PRDW  WY +++PE  PLPG+WE  C++LQR+ ++RSLRPDR
Sbjct: 3751 RGLFERHKLLFSFQMCSKILEAAGKLNMDEYNFFLRGGVVLDREGQMDNPCTQWLNEASWDNITELDKLPNFHGIVTSFEQYPRDWNIWYTSAEPENTPLPGEWENACNELQRMLIVRSLRPDR 3874
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BLAST of mRNA_P-wetherbeei_contig6897.1.1 vs. uniprot
Match: A0A3M6T609_POCDA (Uncharacterized protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6T609_POCDA)

HSP 1 Score: 172 bits (436), Expect = 2.400e-47
Identity = 72/124 (58.06%), Postives = 92/124 (74.19%), Query Frame = 1 
Query:    1 RGLFERHKLLFSLQLCFRIFQRQNKIPPEEYAFLLYGGVVVDRAARRANPCRDWLDEAAWDNISELDKLPALTGVAASFETAPRDWRAWYVASQPEEAPLPGDWETKCSDLQRLCVLRSLRPDR 372
            RGLFERHKLLFS Q+C +I +   K+  +EY F L GGVV+DR  +  NPC  WL+EA+WDNI+ELDKLP   G+  SFE  PRDW  WY +++PE  PLPG+WE  C++LQR+ ++RSLRPDR
Sbjct: 3756 RGLFERHKLLFSFQMCSKILEAAGKLNMDEYNFFLRGGVVLDREGQMDNPCTQWLNEASWDNITELDKLPNFHGIVTSFEQYPRDWNIWYTSAEPENTPLPGEWENACNELQRMLIVRSLRPDR 3879
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BLAST of mRNA_P-wetherbeei_contig6897.1.1 vs. uniprot
Match: A0A2B4SSD1_STYPI (Dynein-1-beta heavy chain, flagellar inner arm I1 complex n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SSD1_STYPI)

HSP 1 Score: 171 bits (432), Expect = 8.290e-47
Identity = 71/124 (57.26%), Postives = 92/124 (74.19%), Query Frame = 1 
Query:    1 RGLFERHKLLFSLQLCFRIFQRQNKIPPEEYAFLLYGGVVVDRAARRANPCRDWLDEAAWDNISELDKLPALTGVAASFETAPRDWRAWYVASQPEEAPLPGDWETKCSDLQRLCVLRSLRPDR 372
            RGLFERHKLLFS Q+C +I +   K+  +EY F L GGVV+DR  +  NPC  WL+EA+WDN++ELDKLP   G+  SFE  PRDW  WY +++PE  PLPG+WE  C++LQR+ ++RSLRPDR
Sbjct: 3592 RGLFERHKLLFSFQMCSKILEAAGKLNIDEYNFFLRGGVVLDREGQMDNPCTQWLNEASWDNMTELDKLPNFHGIVTSFEQYPRDWNIWYTSAEPENTPLPGEWENACNELQRMLIVRSLRPDR 3715
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BLAST of mRNA_P-wetherbeei_contig6897.1.1 vs. uniprot
Match: A7SQG6_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SQG6_NEMVE)

HSP 1 Score: 170 bits (430), Expect = 1.540e-46
Identity = 71/124 (57.26%), Postives = 90/124 (72.58%), Query Frame = 1 
Query:    1 RGLFERHKLLFSLQLCFRIFQRQNKIPPEEYAFLLYGGVVVDRAARRANPCRDWLDEAAWDNISELDKLPALTGVAASFETAPRDWRAWYVASQPEEAPLPGDWETKCSDLQRLCVLRSLRPDR 372
            RGLFERHKLLFS Q+C +I +   K+  +EY F L GGVV+DR  +  NPC  WL + +WDN++ELDKLP   G+  SFE  PRDW  WY +S+PE  PLPG+WE  C++LQR+ V+RSLRPDR
Sbjct: 3496 RGLFERHKLLFSFQMCSKILEAAGKLNMDEYNFFLRGGVVLDREGQMDNPCTQWLTDTSWDNVTELDKLPNFHGIVTSFEQYPRDWNQWYTSSEPENTPLPGEWENACNELQRMLVVRSLRPDR 3619
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6897.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWX3_ECTSI3.360e-5969.35Axonemal 1-beta dynein heavy chain dynein heavy ch... [more]
A0A7S1XUA6_9STRA8.090e-5564.52Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A835Z4V1_9STRA8.600e-5266.14Dynein heavy chain n=1 Tax=Tribonema minus TaxID=3... [more]
F0YMC7_AURAN5.460e-5160.48Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2WYK5_9STRA4.250e-4958.06Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S1CJP2_9STRA6.800e-4959.35Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
UPI000F5546F92.400e-4758.06dynein heavy chain 2, axonemal-like n=1 Tax=Pocill... [more]
A0A3M6T609_POCDA2.400e-4758.06Uncharacterized protein n=1 Tax=Pocillopora damico... [more]
A0A2B4SSD1_STYPI8.290e-4757.26Dynein-1-beta heavy chain, flagellar inner arm I1 ... [more]
A7SQG6_NEMVE1.540e-4657.26Predicted protein n=1 Tax=Nematostella vectensis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6897contigP-wetherbeei_contig6897:1593..1964 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FWX3
Preferred nameDNAH2
PFAMsAAA_5,AAA_6,AAA_7,AAA_8,AAA_9,DHC_N1,DHC_N2,Dynein_heavy,MT
Model size372
Max annot lvl2759|Eukaryota
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008017,GO:0008092,GO:0008150,GO:0008569,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0031514,GO:0032838,GO:0032991,GO:0034622,GO:0035082,GO:0036156,GO:0036159,GO:0040011,GO:0042623,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0045503,GO:0045505,GO:0048870,GO:0051179,GO:0051674,GO:0051959,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902494,GO:1990939
Exons1
Evalue5.51e-60
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
Cds size372
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186944.2410374-CDS-P-wetherbeei_contig6897:1592..19641683186944.2410374-CDS-P-wetherbeei_contig6897:1592..1964Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6897 1593..1964 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6897.1.1prot_P-wetherbeei_contig6897.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6897 1593..1964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6897.1.1

>prot_P-wetherbeei_contig6897.1.1 ID=prot_P-wetherbeei_contig6897.1.1|Name=mRNA_P-wetherbeei_contig6897.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=124bp
RGLFERHKLLFSLQLCFRIFQRQNKIPPEEYAFLLYGGVVVDRAARRANP
CRDWLDEAAWDNISELDKLPALTGVAASFETAPRDWRAWYVASQPEEAPL
PGDWETKCSDLQRLCVLRSLRPDR
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mRNA from alignment at P-wetherbeei_contig6897:1593..1964+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6897.1.1 ID=mRNA_P-wetherbeei_contig6897.1.1|Name=mRNA_P-wetherbeei_contig6897.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig6897:1593..1964+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGGCCTTTTCGAGCGCCACAAGCTGCTTTTCTCGCTGCAGCTCTGCTT
CCGCATCTTCCAGCGCCAGAACAAAATTCCCCCCGAAGAGTACGCCTTTT
TACTCTACGGCGGCGTCGTCGTCGACCGCGCCGCTCGCCGCGCCAACCCG
TGCCGCGACTGGCTGGACGAGGCGGCCTGGGACAACATATCCGAGCTGGA
CAAGCTGCCGGCATTGACGGGCGTCGCCGCCAGCTTCGAGACGGCGCCGC
GCGACTGGCGCGCCTGGTATGTCGCGTCGCAGCCCGAGGAAGCTCCTCTG
CCCGGTGACTGGGAGACCAAGTGCAGCGACCTGCAGCGGCTCTGTGTCCT
GCGCTCGCTGCGCCCCGACCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6897:1593..1964+

>mRNA_P-wetherbeei_contig6897.1.1 ID=mRNA_P-wetherbeei_contig6897.1.1|Name=mRNA_P-wetherbeei_contig6897.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig6897:1593..1964+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGGCCTTTTCGAGCGCCACAAGCTGCTTTTCTCGCTGCAGCTCTGCTT
CCGCATCTTCCAGCGCCAGAACAAAATTCCCCCCGAAGAGTACGCCTTTT
TACTCTACGGCGGCGTCGTCGTCGACCGCGCCGCTCGCCGCGCCAACCCG
TGCCGCGACTGGCTGGACGAGGCGGCCTGGGACAACATATCCGAGCTGGA
CAAGCTGCCGGCATTGACGGGCGTCGCCGCCAGCTTCGAGACGGCGCCGC
GCGACTGGCGCGCCTGGTATGTCGCGTCGCAGCCCGAGGAAGCTCCTCTG
CCCGGTGACTGGGAGACCAAGTGCAGCGACCTGCAGCGGCTCTGTGTCCT
GCGCTCGCTGCGCCCCGACCGG
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