mRNA_P-wetherbeei_contig6894.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6894.1.1
Unique NamemRNA_P-wetherbeei_contig6894.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6894.1.1 vs. uniprot
Match: A0A399X9M1_9BACT (HTH araC/xylS-type domain-containing protein n=6 Tax=Armatimonadetes TaxID=67819 RepID=A0A399X9M1_9BACT)

HSP 1 Score: 88.6 bits (218), Expect = 1.990e-18
Identity = 47/107 (43.93%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    1 RPEARRVELALTWAETNLGSARNLRAIARRADLSESHFRALFRKLRKQPAGAWLRARRLWEARRLLVATGLTLKEIAAQLGYSDVVSFNRAFGQHHGTPPGRFRKTR 321
            RP  R++  AL + + N G   +   +A R  LS SHFR LFR+   +P   +L ARRL +ARRLL+ T + +++I A+LG+S + SF+RAF +H+GTPP   R  R
Sbjct:  280 RPTDRQIRAALGFVDQNFGKDLSDDEVAHRVGLSTSHFRYLFRQATGRPFQQYLLARRLEQARRLLIETDIPVQDIGAELGFSSLASFSRAFARHYGTPPSALRDER 386          
BLAST of mRNA_P-wetherbeei_contig6894.1.1 vs. uniprot
Match: A0A0P1FCR6_9RHOB (L-rhamnose operon transcriptional activator RhaR n=2 Tax=Thalassobius autumnalis TaxID=2072972 RepID=A0A0P1FCR6_9RHOB)

HSP 1 Score: 75.1 bits (183), Expect = 5.190e-14
Identity = 44/100 (44.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:   16 RVELALTWAETNLGSARNLRAIARRADLSESHFRALFRKLRKQPAGAWLRARRLWEARRLLVATGLTLKEIAAQLGYSDVVSFNRAFGQHHGTPPGRFRK 315
            RV+ A   A   L   R+L+ +A  A LSES FRA  R     PAG  L+  +L  A RLL  TGLTL ++AAQ+G++   S + AF +H+G  PGR+R+
Sbjct:  150 RVDRAWQEATEKLAEIRSLQDVAALAGLSESSFRAEHRTQHGAPAGRHLQRLKLRHAARLLTTTGLTLSDVAAQVGFAHAESLSAAFSRHYGQSPGRYRR 249          
BLAST of mRNA_P-wetherbeei_contig6894.1.1 vs. uniprot
Match: A0A238LGN4_9RHOB (Transcriptional activator FtrA n=2 Tax=Flavimaricola marinus TaxID=1819565 RepID=A0A238LGN4_9RHOB)

HSP 1 Score: 73.9 bits (180), Expect = 1.340e-13
Identity = 45/105 (42.86%), Postives = 58/105 (55.24%), Query Frame = 1
Query:   25 LALTWA--ETNLGSARNLRAIARRADLSESHFRALFRKLRKQPAGAWLRARRLWEARRLLVATGLTLKEIAAQLGYSDVVSFNRAFGQHHGTPPGRFRKTRTPVV 333
            LA  WA    NLG+ R+L  +A   +L ES FR L R +    AGA+LR  R+ +A  LL  TGL++ EIA Q+GY    + N AF Q  G  PG FR+   P  
Sbjct:  147 LARAWALAAQNLGAMRSLVDVAALINLRESAFRTLHRNVHGTSAGAYLRGLRMSQAESLLATTGLSMTEIARQVGYGHAETLNGAFRQSRGMTPGTFRRHAQPFA 251          
BLAST of mRNA_P-wetherbeei_contig6894.1.1 vs. uniprot
Match: UPI000FDAA5E1 (helix-turn-helix transcriptional regulator n=1 Tax=Rhodobacterales TaxID=204455 RepID=UPI000FDAA5E1)

HSP 1 Score: 73.6 bits (179), Expect = 2.020e-13
Identity = 48/111 (43.24%), Postives = 57/111 (51.35%), Query Frame = 1
Query:    7 EARRVELALTW--AETNLGSARNLRAIARRADLSESHFRALFRKLRKQPAGAWLRARRLWEARRLLVATGLTLKEIAAQLGYSDVVSFNRAFGQHHGTPPGRFRKTRTPVV 333
            + R   LA  W  A  NLG  R+L  +A    L ES  R L R++   PAGA LR  RL  A  LL  TGLTL EIA Q+GY    + + AF Q  G  PG FR+   P  
Sbjct:  147 DRRAQRLAQAWDQAAANLGGMRSLVDVAALIGLRESALRTLHREVHGTPAGAHLRELRLTRAEALLATTGLTLAEIARQVGYGHAETLSAAFQQSRGMTPGGFRRHARPFA 257          
BLAST of mRNA_P-wetherbeei_contig6894.1.1 vs. uniprot
Match: A0A399WRK5_9BACT (AraC family transcriptional regulator n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A399WRK5_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 5.680e-12
Identity = 46/105 (43.81%), Postives = 59/105 (56.19%), Query Frame = 1
Query:    1 RPEARR-----VELALTWAETNLGSARNLRAIARRADLSESHFRALFRKLRKQPAGAWLRARRLWEARRLLVATGLTLKEIAAQLGYSDVVSFNRAFGQHHGTPP 300
            RPEA R     VE A    + +     N   +A R  LS SHFR LF+ L   P   +L   RL  AR+LL  + L++KE+AA++GYSD  SF RA+  HHG PP
Sbjct:  120 RPEANRFAARTVETAKLLIQKHFAEEINDEWVAGRVHLSRSHFRYLFKALTGVPFKRYLSEIRLNHARQLLENSPLSVKEVAAKVGYSDSSSFYRAYRAHHGVPP 224          
BLAST of mRNA_P-wetherbeei_contig6894.1.1 vs. uniprot
Match: UPI001E3AC9C8 (AraC family transcriptional regulator n=1 Tax=Microbacterium sp. W2R TaxID=2898586 RepID=UPI001E3AC9C8)

HSP 1 Score: 68.9 bits (167), Expect = 1.490e-11
Identity = 44/104 (42.31%), Postives = 59/104 (56.73%), Query Frame = 1
Query:    1 RPEARRVELALTWAETNLGSARNLRAIARRADLSESHFRALFRKLRKQPAGAWLRARRLWEARRLLVATGLTLKEIAAQLGYSDVVSFNRAFGQHHGTPPGRFR 312
            R  A R+ +   +   NL SA  +  +AR A+LS SHF ALF+         +L+  R   AR LLV T L++ EIAAQ+GYSD   F+R F   +GT P +FR
Sbjct:  181 RHTADRIHVVQEYLRDNLASAVPVSELARLAELSTSHFSALFKASTGYSVVDYLKRLRSARARELLVTTDLSVAEIAAQVGYSDAFYFSRQFRAINGTSPTQFR 284          
BLAST of mRNA_P-wetherbeei_contig6894.1.1 vs. uniprot
Match: A0A653TPI4_9PSED (AraC family transcriptional regulator n=5 Tax=unclassified Pseudomonas TaxID=196821 RepID=A0A653TPI4_9PSED)

HSP 1 Score: 67.0 bits (162), Expect = 6.600e-11
Identity = 42/103 (40.78%), Postives = 56/103 (54.37%), Query Frame = 1
Query:    7 EARRVELALTWAETNLGSARNLRAIARRADLSESHFRALFRKLRKQPAGAWLRARRLWEARRLLVATGLTLKEIAAQLGYSDVVSFNRAFGQHHGTPPGRFRK 315
            E R V LA     T LG   +L  +A   +LS  HF  +FR+    P  AWLR RRL +AR LL  +G    ++A QLG+SD    +R F Q +G  PG +R+
Sbjct:  169 EPRAVALAKELLATRLGEPPSLEELAALVNLSPFHFARVFRRATGLPPHAWLRQRRLEQARALL-RSGCAPLQVAVQLGFSDQSHLSRQFKQSYGVSPGEYRR 270          
BLAST of mRNA_P-wetherbeei_contig6894.1.1 vs. uniprot
Match: UPI001C578A54 (AraC family transcriptional regulator n=1 Tax=Variovorax boronicumulans TaxID=436515 RepID=UPI001C578A54)

HSP 1 Score: 66.6 bits (161), Expect = 1.080e-10
Identity = 36/81 (44.44%), Postives = 49/81 (60.49%), Query Frame = 1
Query:   79 IARRADLSESHFRALFRKLRKQPAGAWLRARRLWEARRLLVATGLTLKEIAAQLGYSDVVSFNRAFGQHHGTPPGRFRKTR 321
            +A   D+S  HF   F++      G ++R RR+ EA RLLV TGL +++I A +GY D  +F RAF Q HG  P RFR+ R
Sbjct:  215 LAALCDMSPFHFSRQFKRETGFSPGRFIRMRRMKEASRLLVGTGLGIEDITAAVGYQDPSAFRRAFIQEHGMTPSRFRRGR 295          
BLAST of mRNA_P-wetherbeei_contig6894.1.1 vs. uniprot
Match: UPI000D3DA15E (helix-turn-helix domain-containing protein n=1 Tax=Planctomonas deserti TaxID=2144185 RepID=UPI000D3DA15E)

HSP 1 Score: 64.7 bits (156), Expect = 5.920e-10
Identity = 37/104 (35.58%), Postives = 52/104 (50.00%), Query Frame = 1
Query:    4 PEARRVELALTWAETNLGSARNLRAIARRADLSESHFRALFRKLRKQPAGAWLRARRLWEARRLLVATGLTLKEIAAQLGYSDVVSFNRAFGQHHGTPPGRFRK 315
            P    +   L WA+ NL     +  +A RA  S   F   FR        AW+R+RRL EARRLL  T  ++  IAA  G+   V+  + F   +GTPP ++R+
Sbjct:  206 PSDHAIAAVLDWAQANLREPLTIDDLAARARQSRRTFIRAFRASTGTTPAAWIRSRRLDEARRLLETTDSSIDRIAADCGFGSAVTLRQRFEAEYGTPPSQYRR 309          
BLAST of mRNA_P-wetherbeei_contig6894.1.1 vs. uniprot
Match: U2ZR26_PSEA4 (Putative AraC family transcriptional regulator n=5 Tax=Pseudomonas TaxID=286 RepID=U2ZR26_PSEA4)

HSP 1 Score: 64.3 bits (155), Expect = 6.500e-10
Identity = 40/103 (38.83%), Postives = 55/103 (53.40%), Query Frame = 1
Query:    7 EARRVELALTWAETNLGSARNLRAIARRADLSESHFRALFRKLRKQPAGAWLRARRLWEARRLLVATGLTLKEIAAQLGYSDVVSFNRAFGQHHGTPPGRFRK 315
            E R V LA       LG   +L  +A   +LS  HF  +FR+    P  AWL+ RRL +AR LL  +G    ++A QLG++D    NR F Q +G  PG +R+
Sbjct:  170 EPRAVALAKELLAARLGEPPSLEELATLVNLSPFHFARVFRRATGLPPHAWLKQRRLEQARALL-RSGCAPLQVALQLGFADQSHLNRQFKQSYGVSPGEYRR 271          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6894.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A399X9M1_9BACT1.990e-1843.93HTH araC/xylS-type domain-containing protein n=6 T... [more]
A0A0P1FCR6_9RHOB5.190e-1444.00L-rhamnose operon transcriptional activator RhaR n... [more]
A0A238LGN4_9RHOB1.340e-1342.86Transcriptional activator FtrA n=2 Tax=Flavimarico... [more]
UPI000FDAA5E12.020e-1343.24helix-turn-helix transcriptional regulator n=1 Tax... [more]
A0A399WRK5_9BACT5.680e-1243.81AraC family transcriptional regulator n=1 Tax=Arma... [more]
UPI001E3AC9C81.490e-1142.31AraC family transcriptional regulator n=1 Tax=Micr... [more]
A0A653TPI4_9PSED6.600e-1140.78AraC family transcriptional regulator n=5 Tax=uncl... [more]
UPI001C578A541.080e-1044.44AraC family transcriptional regulator n=1 Tax=Vari... [more]
UPI000D3DA15E5.920e-1035.58helix-turn-helix domain-containing protein n=1 Tax... [more]
U2ZR26_PSEA46.500e-1038.83Putative AraC family transcriptional regulator n=5... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6894contigP-wetherbeei_contig6894:320..655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog794903.OPIT5_12785
Preferred nameagpT
PFAMsAraC_binding,HTH_18,HTH_AraC
Model size336
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.35e-12
EggNOG OGsCOG2207@1|root,COG2207@2|Bacteria
DescriptionTranscriptional regulator
Cds size336
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186943.9821658-CDS-P-wetherbeei_contig6894:319..6551683186943.9821658-CDS-P-wetherbeei_contig6894:319..655Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6894 320..655 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6894.1.1prot_P-wetherbeei_contig6894.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6894 320..655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6894.1.1

>prot_P-wetherbeei_contig6894.1.1 ID=prot_P-wetherbeei_contig6894.1.1|Name=mRNA_P-wetherbeei_contig6894.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp
RPEARRVELALTWAETNLGSARNLRAIARRADLSESHFRALFRKLRKQPA
GAWLRARRLWEARRLLVATGLTLKEIAAQLGYSDVVSFNRAFGQHHGTPP
GRFRKTRTPVV*
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mRNA from alignment at P-wetherbeei_contig6894:320..655+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6894.1.1 ID=mRNA_P-wetherbeei_contig6894.1.1|Name=mRNA_P-wetherbeei_contig6894.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig6894:320..655+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCCGGAGGCGCGGCGGGTGGAGCTGGCGCTGACGTGGGCCGAGACGAA CCTCGGGTCGGCGCGGAATCTGCGGGCCATCGCGCGGCGGGCTGATCTCT CGGAGAGTCATTTCCGCGCCCTCTTCCGCAAACTGAGGAAGCAGCCCGCC GGGGCCTGGCTGCGCGCGCGGCGCCTGTGGGAGGCGCGGCGGCTGCTGGT GGCGACCGGGCTGACGTTGAAGGAGATCGCCGCGCAACTCGGTTACAGTG ACGTGGTGAGCTTCAACCGCGCTTTTGGCCAGCATCACGGGACACCGCCC GGCCGGTTTCGCAAGACCCGGACACCGGTGGTTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6894:320..655+

>mRNA_P-wetherbeei_contig6894.1.1 ID=mRNA_P-wetherbeei_contig6894.1.1|Name=mRNA_P-wetherbeei_contig6894.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig6894:320..655+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCCGGAGGCGCGGCGGGTGGAGCTGGCGCTGACGTGGGCCGAGACGAA
CCTCGGGTCGGCGCGGAATCTGCGGGCCATCGCGCGGCGGGCTGATCTCT
CGGAGAGTCATTTCCGCGCCCTCTTCCGCAAACTGAGGAAGCAGCCCGCC
GGGGCCTGGCTGCGCGCGCGGCGCCTGTGGGAGGCGCGGCGGCTGCTGGT
GGCGACCGGGCTGACGTTGAAGGAGATCGCCGCGCAACTCGGTTACAGTG
ACGTGGTGAGCTTCAACCGCGCTTTTGGCCAGCATCACGGGACACCGCCC
GGCCGGTTTCGCAAGACCCGGACACCGGTGGTTTGA
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