mRNA_P-wetherbeei_contig6886.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6886.1.1
Unique NamemRNA_P-wetherbeei_contig6886.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6886.1.1 vs. uniprot
Match: A0A836CJ23_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ23_9STRA)

HSP 1 Score: 173 bits (438), Expect = 2.400e-45
Identity = 88/170 (51.76%), Postives = 118/170 (69.41%), Query Frame = 2 
Query:   29 VSRYSTNILGGILLVRAFLGHDWTVKSCYVLKWLLTTDLYDRDEIGVTAAASKAAWLAGYCAAVGMVAAAFAAMLLDASRTGVAAAAALAAGGLYGFLLAVTQGLPVTPAFLLTDLGSALLIRAHRPAQCPCEKRRWAHCADMHSRDELIFLQVRDVTTFSEMLRGDDTI 538
            + RY+T +LG I+L+RA+LG  W +++ + L+WL+TT++YDRDE+G    A K  ++A Y AA     A   A L+  S  G+A  AAL AG LYG LLAV QGLPVTP FLLT + S L +R HR A CPC+ R + HC+ MHSRDE++ + VRDV+TF E+L GDD+I
Sbjct:  745 IQRYTTPVLGAIILIRAWLGPTWVLQAAFALRWLVTTNMYDRDEVGSAVTAVKTRYMALYSAAAATFTATVVAALVHPSFAGIAFGAALLAGTLYGLLLAVVQGLPVTPRFLLTTIQSGLYLRVHRQAYCPCDAR-FEHCSAMHSRDEVVSIFVRDVSTFRELLEGDDSI 913
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6886.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CJ23_9STRA2.400e-4551.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6886contigP-wetherbeei_contig6886:610..1586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size833
Hectar predicted targeting categoryother localisation
Exons2
Cds size531
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186943.4415867-CDS-P-wetherbeei_contig6886:609..6361683186943.4415867-CDS-P-wetherbeei_contig6886:609..636Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6886 610..636 +
1683186943.4521596-CDS-P-wetherbeei_contig6886:782..12861683186943.4521596-CDS-P-wetherbeei_contig6886:782..1286Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6886 783..1286 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186943.4621751-UTR-P-wetherbeei_contig6886:1286..15861683186943.4621751-UTR-P-wetherbeei_contig6886:1286..1586Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6886 1287..1586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6886.1.1prot_P-wetherbeei_contig6886.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6886 610..1286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6886.1.1

>prot_P-wetherbeei_contig6886.1.1 ID=prot_P-wetherbeei_contig6886.1.1|Name=mRNA_P-wetherbeei_contig6886.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=177bp
GCRPTPLQQGVALLNQYSRRHTAGAGVSRPRLDREELLCPQVAADDRPLR
PGRDWRDRRRQQGGVAGRLLRCGRHGGGGIRGDAPGCVADGRGSSGGAGG
GRAIRLPARRHAGPSRHAGVPADGSGLGTADPGAPAGAMPVREAAVGALC
GHALAGRADLPAGARRHHLFRDAARG*
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mRNA from alignment at P-wetherbeei_contig6886:610..1586+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6886.1.1 ID=mRNA_P-wetherbeei_contig6886.1.1|Name=mRNA_P-wetherbeei_contig6886.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=977bp|location=Sequence derived from alignment at P-wetherbeei_contig6886:610..1586+ (Phaeothamnion wetherbeei SAG_119_79)
GGTTGCCGCCCAACTCCGCTTCAGCAGGTGCTACCGACCGCGAACAGTGC
ACTTTCTTTTAAGACTGCTGAAATATTTTCCGCCGCCTTAAGCCGCTCCA
TTTCTTGTCCGACTCCACGCGGCGGCGATTGTTGCCGCTGCGGCCAAACC
GCTCTCCTCTCTTGCATTTGCAGGGTGTCGCGTTACTCAACCAATATTCT
CGGCGGCATACTGCTGGTGCGGGCGTTTCTCGGCCACGACTGGACCGTGA
AGAGCTGCTATGTCCTCAAGTGGCTGCTGACGACCGACCTCTACGACCGG
GACGAGATTGGCGTGACCGCCGCCGCCAGCAAGGCGGCGTGGCTGGCCGG
CTACTGCGCTGCGGTCGGCATGGTGGCGGCGGCATTCGCGGCGATGCTCC
TGGATGCGTCGCGGACGGGCGTGGCAGCAGCGGCGGCGCTGGCGGCGGGC
GGGCTATACGGCTTCCTGCTCGCCGTCACGCAGGGCCTTCCCGTCACGCC
GGCGTTCCTGCTGACGGATCTGGGCTCGGCACTGCTGATCCGGGCGCACC
GGCCGGCGCAATGCCCGTGCGAGAAGCGGCGGTGGGCGCACTGTGCGGAC
ATGCACTCGCGGGACGAGCTGATCTTCCTGCAGGTGCGCGACGTCACCAC
CTTTTCCGAGATGCTGCGCGGGGATGACACCATCGTCGCGAGCTGCTGAG
CAGGATGGCAACAAAAAGTGTTAGGCGGAAAGCGGCTGTGGGAAACAGCA
GCAGCAAATGGCTGGCAGTTGCGCTGAGGAGCAATGCGGAGCGAAAGAGA
GGCTAGAGGCGGCCTTGTAACCATTGTCCGGACTTGAACTGGGCATCTGC
CGGAGCCTTTCGGATACAGGTTTCTTCTCCGTTGAATTAGGCTACAGCAG
TCCAAAGGGAATGGCCTTGCTCGAAGACGGGGCGCATGTTTCAATCAGGC
ACAGCGGCTGCAAATGAACAATGTAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6886:610..1586+

>mRNA_P-wetherbeei_contig6886.1.1 ID=mRNA_P-wetherbeei_contig6886.1.1|Name=mRNA_P-wetherbeei_contig6886.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=531bp|location=Sequence derived from alignment at P-wetherbeei_contig6886:610..1586+ (Phaeothamnion wetherbeei SAG_119_79)
GGTTGCCGCCCAACTCCGCTTCAGCAGGGTGTCGCGTTACTCAACCAATA
TTCTCGGCGGCATACTGCTGGTGCGGGCGTTTCTCGGCCACGACTGGACC
GTGAAGAGCTGCTATGTCCTCAAGTGGCTGCTGACGACCGACCTCTACGA
CCGGGACGAGATTGGCGTGACCGCCGCCGCCAGCAAGGCGGCGTGGCTGG
CCGGCTACTGCGCTGCGGTCGGCATGGTGGCGGCGGCATTCGCGGCGATG
CTCCTGGATGCGTCGCGGACGGGCGTGGCAGCAGCGGCGGCGCTGGCGGC
GGGCGGGCTATACGGCTTCCTGCTCGCCGTCACGCAGGGCCTTCCCGTCA
CGCCGGCGTTCCTGCTGACGGATCTGGGCTCGGCACTGCTGATCCGGGCG
CACCGGCCGGCGCAATGCCCGTGCGAGAAGCGGCGGTGGGCGCACTGTGC
GGACATGCACTCGCGGGACGAGCTGATCTTCCTGCAGGTGCGCGACGTCA
CCACCTTTTCCGAGATGCTGCGCGGGGATGA
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