mRNA_P-wetherbeei_contig6880.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6880.2.1
Unique NamemRNA_P-wetherbeei_contig6880.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6880.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6880contigP-wetherbeei_contig6880:1785..3177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1122939.ATUD01000002_gene1352
Preferred namecelM
PFAMsF5_F8_type_C,Glyco_hydro_44,PKD,Trypsin_2
Model size927
Max annot lvl2|Bacteria
KEGG koko:K01179,ko:K20276
KEGG ReactionR06200,R11307,R11308
KEGG Pathwayko00500,ko01100,ko02024,map00500,map01100,map02024
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.7e-05
EggNOG OGsCOG2911@1|root,COG3210@1|root,COG3291@1|root,COG2911@2|Bacteria,COG3210@2|Bacteria,COG3291@2|Bacteria
EC3.2.1.4
Descriptionmetallopeptidase activity
Cds size648
COG categoryS
CAZyGH5,GH9
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186943.1759796-UTR-P-wetherbeei_contig6880:1784..19521683186943.1759796-UTR-P-wetherbeei_contig6880:1784..1952Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6880 1785..1952 -
1683186943.1889265-UTR-P-wetherbeei_contig6880:2181..22891683186943.1889265-UTR-P-wetherbeei_contig6880:2181..2289Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6880 2182..2289 -
1683186943.2236779-UTR-P-wetherbeei_contig6880:3174..31771683186943.2236779-UTR-P-wetherbeei_contig6880:3174..3177Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6880 3175..3177 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186943.1994467-CDS-P-wetherbeei_contig6880:2289..23481683186943.1994467-CDS-P-wetherbeei_contig6880:2289..2348Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6880 2290..2348 -
1683186943.209908-CDS-P-wetherbeei_contig6880:2585..31741683186943.209908-CDS-P-wetherbeei_contig6880:2585..3174Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6880 2586..3174 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6880.2.1prot_P-wetherbeei_contig6880.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6880 2290..3174 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6880.2.1

>prot_P-wetherbeei_contig6880.2.1 ID=prot_P-wetherbeei_contig6880.2.1|Name=mRNA_P-wetherbeei_contig6880.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=216bp
MDGASAVPRVEEMKVMKVLRRWLRLKNQPCIQITAFAFFSEVLRCSAVSL
SGIESWTLEYVYYQGRNVFQHPFPEVTMSPVITKTIAVTSTSNITSAQVN
VTAISSNTLLGTLAYDTNLSGAVDGIYDEDAGTLWINGSAPAFVYQTLLR
SVTYEAPDKYSNGDDPRSHMKEVSFVVTDSSWASSAKVTREILLRTAAKV
CTDKATCAIMYPRTT*
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mRNA from alignment at P-wetherbeei_contig6880:1785..3177-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6880.2.1 ID=mRNA_P-wetherbeei_contig6880.2.1|Name=mRNA_P-wetherbeei_contig6880.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1393bp|location=Sequence derived from alignment at P-wetherbeei_contig6880:1785..3177- (Phaeothamnion wetherbeei SAG_119_79)
GGAATGGACGGCGCTTCAGCCGTTCCGAGAGTCGAAGAGATGAAGGTGAT
GAAGGTACTTCGACGATGGCTTCGACTTAAAAACCAACCCTGCATCCAAA
TCACCGCCTTTGCCTTCTTTTCGGAGGTGCTGCGTTGCAGCGCGGTATCA
TTGAGCGGCATTGAATCGTGGACTCTGGAGTACGTCTACTACCAGGGCAG
AAATGTCTTTCAGCATCCCTTTCCCGAAGTGACTATGAGTCCAGTGATAA
CCAAGACCATTGCCGTCACCTCCACATCAAACATCACCTCGGCGCAAGTG
AACGTTACTGCCATATCATCGAACACACTGCTAGGCACTTTGGCATACGA
CACCAACTTGAGCGGCGCAGTTGACGGCATCTACGACGAAGATGCGGGAA
CGCTCTGGATCAACGGAAGCGCACCAGCTTTCGTCTACCAGACGCTCCTC
AGATCTGTCACTTACGAGGCGCCCGACAAGTATAGCAACGGCGATGATCC
GAGATCACATATGAAAGAAGTATCATTTGTCGTTACCGATTCAAGCTGGG
CTTCGAGCGCTAAAGTCACTCGCGAAATCCTGCTCCGCACAGGCAAGGTT
GCATATTTAGTTCAGAGGCTGTATCTTTTGGATTCTCTTCAGAAGCCACA
ATGTTTGTGTGATTTAAATGGGGTTCTTCTCCTCGAGATAGGGAAAAATG
CTATTTTGCTACTACGCTTGCATCATTTCTCCTTTGCTTTTCACCTTTTG
CTGGGGGCAGCTCTGAACACATATATTTGCTTATTCATTCCCTTCTCTTC
AATTCCATCCTTTGCATCGGGTGGGTCAGCCGCCAAAGTGTGTACGGATA
AAGCGACATGCGCTATCATGTATCCCCGAACGACATGAACAACATCTAGC
TGATAAAATCGAGGCAAACATGTAGCTGATAGTAGGAGCCAAACCCGTTG
CTCGTCATGGCCGACTATCTATGGTTTCGCGGCCAACTCGCTTAAGGTAA
TTCAAAAAGATGATGTTCTCTCTTGTTCACATCGCGATTGGCGGCTTTCA
TTTGCCAGCGTTCGCCCACTCTCTGGATTATATAGCGACACACCTTTCAA
GGATTAAGGGAGGAGGGCGAGGTTTTATTACTTTGAGATGACTGGCTTCG
TGGAAGGTCCGATGCCTTTGTTTCCCGATGTATTGCTGACCTCTACGGCT
GCGTCCGTTTCGTGTCGCTTTGCAGGCAGCGATGCACCCACGCTGTCTCC
TGCGAAAGTTTCATTCTATTGGAAACGGAGGGGTGGAATGAAGCCGTCCA
TGGCTGTGCAAAATGAGATCGGGAGACCATTTGTCATTGTGGCTTAGCGA
CAGTGTTCCTCAAGAGCCTGCCGCGGGTCATCAAGAACTCGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6880:1785..3177-

>mRNA_P-wetherbeei_contig6880.2.1 ID=mRNA_P-wetherbeei_contig6880.2.1|Name=mRNA_P-wetherbeei_contig6880.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=648bp|location=Sequence derived from alignment at P-wetherbeei_contig6880:1785..3177- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGGCGCTTCAGCCGTTCCGAGAGTCGAAGAGATGAAGGTGATGAA
GGTACTTCGACGATGGCTTCGACTTAAAAACCAACCCTGCATCCAAATCA
CCGCCTTTGCCTTCTTTTCGGAGGTGCTGCGTTGCAGCGCGGTATCATTG
AGCGGCATTGAATCGTGGACTCTGGAGTACGTCTACTACCAGGGCAGAAA
TGTCTTTCAGCATCCCTTTCCCGAAGTGACTATGAGTCCAGTGATAACCA
AGACCATTGCCGTCACCTCCACATCAAACATCACCTCGGCGCAAGTGAAC
GTTACTGCCATATCATCGAACACACTGCTAGGCACTTTGGCATACGACAC
CAACTTGAGCGGCGCAGTTGACGGCATCTACGACGAAGATGCGGGAACGC
TCTGGATCAACGGAAGCGCACCAGCTTTCGTCTACCAGACGCTCCTCAGA
TCTGTCACTTACGAGGCGCCCGACAAGTATAGCAACGGCGATGATCCGAG
ATCACATATGAAAGAAGTATCATTTGTCGTTACCGATTCAAGCTGGGCTT
CGAGCGCTAAAGTCACTCGCGAAATCCTGCTCCGCACAGCCGCCAAAGTG
TGTACGGATAAAGCGACATGCGCTATCATGTATCCCCGAACGACATGA
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