mRNA_P-wetherbeei_contig6865.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6865.1.1
Unique NamemRNA_P-wetherbeei_contig6865.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6865.1.1 vs. uniprot
Match: A0A7S2FT66_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2FT66_9EUKA)

HSP 1 Score: 119 bits (298), Expect = 7.220e-31
Identity = 67/125 (53.60%), Postives = 82/125 (65.60%), Query Frame = 1
Query:    1 LLQMILQLKGWTFGRWDAMYADRPSRQAKLAVADRTVIECVADETRLVRPVALQVALDDEAQRCGGKIVGGGGARCFVRPSGTEDVVRVYAEAATQAAADALALAALRAAHRHAGGLGPPPERIA 375
            L++ IL +KGW+F +WDA+Y D PSRQ KLAVADRTVI   ADET+   P  LQ  L+  A +           RCFVRPSGTEDVVRVYAEA+T+A A+ LAL   +   + AGG+G  P  IA
Sbjct:  125 LVEAILSMKGWSFAQWDALYEDLPSRQTKLAVADRTVITTTADETQATAPADLQPQLNGLAAQFES-------GRCFVRPSGTEDVVRVYAEASTEAKANELALIVAQTTWKLAGGVGDMPTSIA 242          
BLAST of mRNA_P-wetherbeei_contig6865.1.1 vs. uniprot
Match: E1ZGR0_CHLVA (PGM_PMM_IV domain-containing protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZGR0_CHLVA)

HSP 1 Score: 117 bits (293), Expect = 1.030e-30
Identity = 64/121 (52.89%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    1 LLQMILQLKGWTFGRWDAMYADRPSRQAKLAVADRTVIECVADETRLVRPVALQVALDDEAQRCGGKIVGGGGARCFVRPSGTEDVVRVYAEAATQAAADALALAALRAAHRHAGGLGPPP 363
            L++  L+ KGW   RW A+YAD PSRQ K++VADR+ ++    ETR+ +P  LQ A+D       G + G    R FVRPSGTEDVVRVYAEA +QAAAD LA A  R  H  AGG+GP P
Sbjct:   75 LVEAALRRKGWGLDRWAALYADLPSRQLKVSVADRSGLQTTDAETRVAQPAGLQAAID-------GAVAGVPSGRSFVRPSGTEDVVRVYAEAESQAAADELAAAVARLVHAQAGGVGPAP 188          
BLAST of mRNA_P-wetherbeei_contig6865.1.1 vs. uniprot
Match: A0A7S2SUY6_9STRA (Phosphoacetylglucosamine mutase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUY6_9STRA)

HSP 1 Score: 122 bits (305), Expect = 7.420e-30
Identity = 67/121 (55.37%), Postives = 82/121 (67.77%), Query Frame = 1
Query:    4 LQMILQLKGWTFGRWDAMYADRPSRQAKLAVADRTVIECVADETRLVRPVALQVALDDEAQRCGGKIVGGGGARCFVRPSGTEDVVRVYAEAATQAAADALALAALRAAHRHAGGLGPPPE 366
            ++ IL+++GW   +WDA+Y D PSRQ KL VADR+V++C  DETR + P  LQ  LD EA     +       RCFVRPSGTEDVVRVYAEAA Q  ADALA+AA +A    AGG+G  PE
Sbjct:  459 VEAILRVRGWGLEQWDALYTDLPSRQMKLPVADRSVVQCSPDETRALEPQGLQATLD-EAMAAVSQ------GRCFVRPSGTEDVVRVYAEAANQTEADALAVAAAQAVFDFAGGIGDRPE 572          
BLAST of mRNA_P-wetherbeei_contig6865.1.1 vs. uniprot
Match: A0A6H5JSA8_9PHAE (Phosphoacetylglucosamine mutase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA8_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.180e-29
Identity = 67/122 (54.92%), Postives = 80/122 (65.57%), Query Frame = 1
Query:    7 QMILQLKGWTFGRWDAMYADRPSRQAKLAVADRTVIECVADETRLVRPVALQVALDDEAQRCGGKIVGGGGARCFVRPSGTEDVVRVYAEAATQAAADALALAALRAAHRHAGGLGPPPERI 372
            + +L+LKGW+   W A+YAD PSRQAK AVADR++I C  DET  +RP  LQ ALD                RCFVRPSGTEDVVRVYAEA T+ AADAL L A++A H  AGG+G  P  +
Sbjct:  489 EAVLRLKGWSCKDWAALYADLPSRQAKTAVADRSIITCSPDETSALRPPGLQAALDKAMATTPN-------GRCFVRPSGTEDVVRVYAEADTREAADALCLEAMQAVHDIAGGVGERPASV 603          
BLAST of mRNA_P-wetherbeei_contig6865.1.1 vs. uniprot
Match: A0A8J5XQG3_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XQG3_DIALT)

HSP 1 Score: 120 bits (300), Expect = 4.980e-29
Identity = 67/121 (55.37%), Postives = 78/121 (64.46%), Query Frame = 1
Query:    1 LLQMILQLKGWTFGRWDAMYADRPSRQAKLAVADRTVIECVADETRLVRPVALQVALDDEAQRCGGKIVGGGGARCFVRPSGTEDVVRVYAEAATQAAADALALAALRAAHRHAGGLGPPP 363
            ++  IL+ + W F +WDA+YAD PSRQ KLAV DR  +    DE+R++ P ALQ ALDD        +      RCFVRPSGTED VRVYAEAATQ  AD LAL A  A HR AGG GP P
Sbjct:  551 IVDAILRRRNWDFSQWDALYADLPSRQTKLAVRDRAALLTSEDESRVLNPPALQRALDD-------LMAVAEAGRCFVRPSGTEDAVRVYAEAATQQLADGLALDAALAVHRLAGGTGPAP 664          
BLAST of mRNA_P-wetherbeei_contig6865.1.1 vs. uniprot
Match: A0A7S2CWM0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CWM0_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.930e-28
Identity = 62/113 (54.87%), Postives = 74/113 (65.49%), Query Frame = 1
Query:    4 LQMILQLKGWTFGRWDAMYADRPSRQAKLAVADRTVIECVADETRLVRPVALQVALDDEAQRCGGKIVGGGGARCFVRPSGTEDVVRVYAEAATQAAADALALAALRAAHRHA 342
            ++ IL ++GW    WD +Y D PSRQ+KL V DR V++C ADET+ + P  LQVALD       G +  G   R FVRPSGTEDVVRVYAEAATQA ADALA  A  A +  A
Sbjct:    9 IEAILTVRGWGLAEWDGLYEDLPSRQSKLPVQDRAVVQCSADETKALAPDGLQVALDGLM----GAVAAG---RAFVRPSGTEDVVRVYAEAATQAEADALAHGAAMAVYEQA 114          
BLAST of mRNA_P-wetherbeei_contig6865.1.1 vs. uniprot
Match: A0A7S0LV10_9EUKA (Phosphoacetylglucosamine mutase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LV10_9EUKA)

HSP 1 Score: 116 bits (291), Expect = 6.230e-28
Identity = 67/121 (55.37%), Postives = 75/121 (61.98%), Query Frame = 1
Query:    1 LLQMILQLKGWTFGRWDAMYADRPSRQAKLAVADRTVIECVADETRLVRPVALQVALDDEAQRCGGKIVGGGGARCFVRPSGTEDVVRVYAEAATQAAADALALAALRAAHRHAGGLGPPP 363
            L++ IL L+GW    WD +Y D PSRQ+KL V DRT I     E RL  P+ALQ ALD     C          RCFVRPSGTEDVVRVYAEAATQA ADALAL   +A    AGG+G  P
Sbjct:  445 LVEAILALRGWGAAEWDGLYEDLPSRQSKLPVKDRTAITTTPTEERLTSPLALQSALDSLMAECPH-------GRCFVRPSGTEDVVRVYAEAATQADADALALRTAQATWELAGGVGEKP 558          
BLAST of mRNA_P-wetherbeei_contig6865.1.1 vs. uniprot
Match: A0A067CQZ5_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CQZ5_SAPPC)

HSP 1 Score: 113 bits (283), Expect = 1.500e-27
Identity = 60/113 (53.10%), Postives = 74/113 (65.49%), Query Frame = 1
Query:   25 KGWTFGRWDAMYADRPSRQAKLAVADRTVIECVADETRLVRPVALQVALDDEAQRCGGKIVGGGGARCFVRPSGTEDVVRVYAEAATQAAADALALAALRAAHRHAGGLGPPP 363
            + W+  +WD +YAD PSRQ K+ +ADRT+++C  DET+   P AL+ A+       G     G  AR FVRPSGTED VRVYAEAATQ  ADALAL   +A H HAGG+G  P
Sbjct:  262 RDWSITQWDGIYADLPSRQTKVKIADRTIVKCTEDETQATAPEALKDAVS------GLVAAAGPSARAFVRPSGTEDAVRVYAEAATQDGADALALKVAQAVHEHAGGVGDMP 368          
BLAST of mRNA_P-wetherbeei_contig6865.1.1 vs. uniprot
Match: A0A7S2CLD8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CLD8_9STRA)

HSP 1 Score: 114 bits (285), Expect = 4.530e-27
Identity = 65/121 (53.72%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    1 LLQMILQLKGWTFGRWDAMYADRPSRQAKLAVADRTVIECVADETRLVRPVALQVALDDEAQRCGGKIVGGGGARCFVRPSGTEDVVRVYAEAATQAAADALALAALRAAHRHAGGLGPPP 363
            L++ IL  +GW    WD++YAD PSRQ+KL V DR+VI C  +ETR++ P  LQ  LD       G +  G   RCFVRPSGTEDVVR+YAEAATQ  AD LA  A+ A    AGG+G PP
Sbjct:  464 LVEAILTCRGWGLEEWDSLYADLPSRQSKLPVMDRSVISCSPNETRVLAPPQLQETLDGHM----GTVNKG---RCFVRPSGTEDVVRIYAEAATQEEADQLAFDAMCAVFDIAGGVGEPP 577          
BLAST of mRNA_P-wetherbeei_contig6865.1.1 vs. uniprot
Match: A0A7S0NPZ7_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NPZ7_9EUKA)

HSP 1 Score: 107 bits (268), Expect = 7.350e-27
Identity = 65/125 (52.00%), Postives = 74/125 (59.20%), Query Frame = 1
Query:    1 LLQMILQLKGWTFGRWDAMYADRPSRQAKLAVADRTVIECVADETRLVRPVALQVALDDEAQRCGGKIVGGGGARCFVRPSGTEDVVRVYAEAATQAAADALALAALRAAHRHAGGLGPPPERIA 375
            L++ IL L+GW+  +WDAMY D PSRQ KL V DRT I   A E     P  LQ AL+D               R FVRPSGTEDVVRVYAEA++QAAAD LAL   +A    AGGLG  P   A
Sbjct:   78 LVEAILALRGWSIAQWDAMYDDLPSRQTKLPVKDRTAITTTATEELATSPAELQPALNDLMALYPS-------GRAFVRPSGTEDVVRVYAEASSQAAADELALLTAQATWELAGGLGQKPTATA 195          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6865.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2FT66_9EUKA7.220e-3153.60Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
E1ZGR0_CHLVA1.030e-3052.89PGM_PMM_IV domain-containing protein (Fragment) n=... [more]
A0A7S2SUY6_9STRA7.420e-3055.37Phosphoacetylglucosamine mutase n=1 Tax=Rhizochrom... [more]
A0A6H5JSA8_9PHAE1.180e-2954.92Phosphoacetylglucosamine mutase n=1 Tax=Ectocarpus... [more]
A0A8J5XQG3_DIALT4.980e-2955.37Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S2CWM0_9STRA1.930e-2854.87Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S0LV10_9EUKA6.230e-2855.37Phosphoacetylglucosamine mutase n=1 Tax=Coccolithu... [more]
A0A067CQZ5_SAPPC1.500e-2753.10Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A7S2CLD8_9STRA4.530e-2753.72Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0NPZ7_9EUKA7.350e-2752.00Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6865contigP-wetherbeei_contig6865:2358..3070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog554065.XP_005846901.1
PFAMsPGM_PMM_I,PGM_PMM_III,PGM_PMM_IV
Model size384
Max annot lvl3041|Chlorophyta
KEGG rclassRC00408
KEGG koko:K01836
KEGG ReactionR08193
KEGG Pathwayko00520,ko01100,ko01130,map00520,map01100,map01130
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.56e-31
EggNOG OGsCOG1109@1|root,KOG2537@2759|Eukaryota,37SKG@33090|Viridiplantae,34K01@3041|Chlorophyta
Ec32 ortholog descriptionPhosphoacetylglucosamine mutase
Ec32 orthologEc-10_005030.1
EC5.4.2.3
DescriptionBelongs to the phosphohexose mutase family
Cds size375
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186942.3826706-CDS-P-wetherbeei_contig6865:2357..26371683186942.3826706-CDS-P-wetherbeei_contig6865:2357..2637Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6865 2358..2637 -
1683186942.3954377-CDS-P-wetherbeei_contig6865:2966..30611683186942.3954377-CDS-P-wetherbeei_contig6865:2966..3061Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6865 2967..3061 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186942.4056664-UTR-P-wetherbeei_contig6865:3061..30701683186942.4056664-UTR-P-wetherbeei_contig6865:3061..3070Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6865 3062..3070 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6865.1.1prot_P-wetherbeei_contig6865.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6865 2358..3061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6865.1.1

>prot_P-wetherbeei_contig6865.1.1 ID=prot_P-wetherbeei_contig6865.1.1|Name=mRNA_P-wetherbeei_contig6865.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=125bp
MILQLKGWTFGRWDAMYADRPSRQAKLAVADRTVIECVADETRLVRPVAL
QVALDDEAQRCGGKIVGGGGARCFVRPSGTEDVVRVYAEAATQAAADALA
LAALRAAHRHAGGLGPPPERIADA*
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mRNA from alignment at P-wetherbeei_contig6865:2358..3070-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6865.1.1 ID=mRNA_P-wetherbeei_contig6865.1.1|Name=mRNA_P-wetherbeei_contig6865.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=713bp|location=Sequence derived from alignment at P-wetherbeei_contig6865:2358..3070- (Phaeothamnion wetherbeei SAG_119_79)
CTACTTCAGATGATTCTGCAGCTGAAGGGATGGACCTTTGGGCGGTGGGA CGCCATGTACGCCGACCGGCCATCGCGGCAGGCCAAACTCGCCGTCGCCG ACAGGTGCAGTGAGGTTTGACATGTCTTCGGCTTAGTCGATGATCGTCAA CCAAATCTGTGTTGTGCTACTGTTCCATTGCCACCGCCGATCAACTGCTG CCTTCACTGTCCTGCATTCGCTGAGCAGCTCGTCGAAACCGCATGCTCAT TGCTCTCGCCCACGCTGCTGAGGCAGTAATGCTAGCGCTGCCGGCCCCCT TCAGGCGCCCGACCACTCTGCCAGAACTTTCGACACCTCTCACCAGCCAC CCGCTGCCGTCCCAGCGCAATTAAACCGTTTGAAACCCTTTCAAAACCCT GTCCGCAAAAACTGCTTCCCGCCCCATCTGCAGGACGGTCATCGAGTGCG TCGCTGACGAGACGCGGCTGGTGCGCCCCGTGGCGCTGCAGGTGGCGCTG GACGACGAGGCCCAGCGGTGCGGCGGAAAAATCGTCGGCGGTGGTGGCGC CCGGTGCTTCGTTCGGCCGTCGGGCACCGAGGATGTGGTGCGTGTGTACG CCGAGGCGGCGACGCAGGCGGCGGCAGACGCACTGGCGCTGGCGGCGCTG CGGGCGGCACATCGCCACGCCGGCGGTCTCGGCCCGCCGCCGGAACGCAT CGCCGACGCGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6865:2358..3070-

>mRNA_P-wetherbeei_contig6865.1.1 ID=mRNA_P-wetherbeei_contig6865.1.1|Name=mRNA_P-wetherbeei_contig6865.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig6865:2358..3070- (Phaeothamnion wetherbeei SAG_119_79)
ATGATTCTGCAGCTGAAGGGATGGACCTTTGGGCGGTGGGACGCCATGTA
CGCCGACCGGCCATCGCGGCAGGCCAAACTCGCCGTCGCCGACAGGACGG
TCATCGAGTGCGTCGCTGACGAGACGCGGCTGGTGCGCCCCGTGGCGCTG
CAGGTGGCGCTGGACGACGAGGCCCAGCGGTGCGGCGGAAAAATCGTCGG
CGGTGGTGGCGCCCGGTGCTTCGTTCGGCCGTCGGGCACCGAGGATGTGG
TGCGTGTGTACGCCGAGGCGGCGACGCAGGCGGCGGCAGACGCACTGGCG
CTGGCGGCGCTGCGGGCGGCACATCGCCACGCCGGCGGTCTCGGCCCGCC
GCCGGAACGCATCGCCGACGCGTAA
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