mRNA_P-wetherbeei_contig685.1.4 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig685.1.4
Unique NamemRNA_P-wetherbeei_contig685.1.4
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig685.1.4 vs. uniprot
Match: D8LL22_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL22_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 4.140e-36
Identity = 106/287 (36.93%), Postives = 146/287 (50.87%), Query Frame = 1 
Query:   55 GAVALVVRGGCNFTEKVLRAQTAGAIGVVVTDSVPSENWAILMSGGSDDETKAITIPSVFVSQQSGRELWRI---VGGRMG-VFVTLNSTGQIMLGGR-ADALEQLIVYLVVSLVLLAISGFCGLFLALGIQRCQRHYRTRALKALRTYRFRSDSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRVAARGAREYGDSGSPIAAAATXXXXAEGQGEAGGAVGDTLVTCAVCLDDYEEGDVLKVMPCGHAFHAACIDPWLRDKSGRCPMCKAEAL 900
            GA+ALV RG CNFT+KVL AQ AGA  VVVTD+  ++ W ++M G  ++ T+ I IP+V VS  +G  LW     + GR G +  ++ + G I++  R   ALE L +YL++S++LLA SG CGL  ALG    QR YRTRA++ L+++ FR                                               A  G  +    G+   +AA+    +           D L  CA+CL+ YE+GD L  +PC H+FH  CI PWL  KS  CPMCK+EA 
Sbjct:  161 GAIALVERGTCNFTQKVLHAQLAGASAVVVTDTPATDKWLMVMYGDPEN-TQGIDIPAVLVSHATGERLWSNRSWLPGRQGRLRASVGAAGHIVMAARPVGALEMLGIYLLLSVLLLAFSGVCGLVFALGFTWYQRGYRTRAMRKLKSFTFRRRPPPPTLGNQSDPAGTSSSNSGRASGTVD-----------------ATTG--QASSLGNGTGSAASEDNSSSNDNGFMRREDDDL--CAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSEAF 425
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BLAST of mRNA_P-wetherbeei_contig685.1.4 vs. uniprot
Match: W7TBK1_9STRA (Protease-associated RING/U-box zinc finger-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBK1_9STRA)

HSP 1 Score: 148 bits (373), Expect = 4.210e-33
Identity = 110/330 (33.33%), Postives = 144/330 (43.64%), Query Frame = 1 
Query:   55 GAVALVVRGGCNFTEKVLRAQTAGAIGVVVTDSVPSENWAILMSGGSDDETKAITIPSVFVSQQSGRELWRIVG------------GRMGVFVTLNSTGQIMLGGRA-DALEQLIVYLVVSLVLLAISGFCGLFLALGIQRCQRHYRTRALKALRTYRFR--------------------------------SDSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRVAARGAREYGDSGSPIAAAATXXXXAEGQGEAGGAVGDT--LVTCAVCLDDYEEGDVLKVMPCGHAFHAACIDPWLRDKSGRCPMCKAEALS 903
            G +AL+ R GCNFTEKV RAQ A A GV+V DS   E W  +MSG  ++ T  ITIPSVFVS  +G  L   V             G   V VTLN TG +    +    +E L  Y+VVSLVLL+ SG CGL LAL +   QR +R RAL+ L+  +++                                S ++                                        V  +  G    G S  P+          EG G +  +  +     TCA+CLD+YE+GD+L+ +PC H +H  CI PWL +KS  CPMCK    S
Sbjct:   67 GRIALIKRNGCNFTEKVWRAQQAEAAGVIVYDSAARERWGTIMSG-VEEWTSRITIPSVFVSHSTGLSLRNAVAQSERQSSGPGFEGAARVRVTLNDTGHVRAKTKQIGPIETLATYVVVSLVLLSFSGCCGLLLALCVTCYQRAFRHRALRGLKVEKYQRKKVSQQPLLAYNSKDKGSSASTSPSALLSRASPTSLPDRRKGLRGLWGLLSLRRVINKQRSRIPLPLPAHPRLESVPASGLGKARGGRSPCPLTGDGEAPTACEGVGASKDSWSEEEEQTTCAICLDEYEDGDLLRFLPCQHRYHDKCILPWLLEKSEACPMCKRPCFS 395
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BLAST of mRNA_P-wetherbeei_contig685.1.4 vs. uniprot
Match: A0A4D9CZZ7_9STRA (RING-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZZ7_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.490e-32
Identity = 112/334 (33.53%), Postives = 145/334 (43.41%), Query Frame = 1 
Query:   55 GAVALVVRGGCNFTEKVLRAQTAGAIGVVVTDSVPSENWAILMSGGSDDETKAITIPSVFVSQQSGRELWRIVG------------GRMGVFVTLNSTGQIMLGGRA-DALEQLIVYLVVSLVLLAISGFCGLFLALGIQRCQRHYRTRALKALRTYRFR--------------------------------SDSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRVAARGAREYGDSGSPIAAAATXXXXAEGQGEAGGAVGDTL------VTCAVCLDDYEEGDVLKVMPCGHAFHAACIDPWLRDKSGRCPMCKAEALS 903
            G +AL+ R GCNFTEKV RAQ A A GV+V DS   E W  +MSG  ++ T  ITIPSVFVS  +G  L   V             G   V VTLN TG +    +    +E L  Y+VVSLVLL+ SG CGL LAL +   QR +R RAL+ L+  +++                                S ++                                        +  +  G    G    P+    T    A   GE  GA  D+        TCA+CLD+YE+GD+L+ +PC H +H  CI PWL +KS  CPMCK    S
Sbjct:   95 GKIALIKRNGCNFTEKVWRAQQAEAAGVIVYDSAARERWGTIMSG-VEEWTSRITIPSVFVSHSTGLSLRNAVAQSERQSSGPGFEGAARVRVTLNDTGHVRAKTKQIGPIETLATYVVVSLVLLSFSGCCGLLLALCVTCYQRAFRHRALRGLKVEKYQRKKVSQQPLLTYNSKDKGSNASTSPSAPLSRASPTSLPDRRKGLRGLWGLLSLRRVMDKQRSRIPLPLPAHPHLESLPASGLGKGRGGRFPCPL----TGDGEAPTAGEVVGASKDSWSEEEEQTTCAICLDEYEDGDLLRFLPCQHRYHDKCILPWLLEKSEACPMCKRPCFS 423
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BLAST of mRNA_P-wetherbeei_contig685.1.4 vs. uniprot
Match: A0A835YLK1_9STRA (A2M domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK1_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.520e-21
Identity = 64/149 (42.95%), Postives = 87/149 (58.39%), Query Frame = 2 
Query: 1433 VHGAELPRLRIRVEPTKDSHGYGEEALALVTVERAGGGAPTGAAVVVIARVDGEEVYRSAAGIHAMPTTGALTVAAPLPAVWGHGAGTLAATIMDGGVVESSAATLSLVASALDIAVFPKGGDLVADLLNRVYVEGFLSSAEPATFAVE 1879
            V   + PRL +R    + S+  GE     ++VERA GGA  GA V V+AR+DG EVYRS  G   +P +G +    PLP  W  G G L+ T+ DGG V+++   L LVA+ALDI+V+P+GGDLVA   +R+YV        P   A +
Sbjct:  247 VRAYQPPRLAVRARLDRISYAAGEAVGVALSVERAQGGAALGADVTVVARIDGHEVYRSEPGAIKVPASGNVNAVVPLPQSWMAGVGLLSVTVTDGGTVDTTTVALPLVAAALDISVYPEGGDLVAGAPSRIYVSAQQPDGSPVRAAAD 395
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BLAST of mRNA_P-wetherbeei_contig685.1.4 vs. uniprot
Match: A0A6A3F683_9STRA (RING-type domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3F683_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.920e-20
Identity = 94/318 (29.56%), Postives = 137/318 (43.08%), Query Frame = 1 
Query:    1 PFHPKNACED-EGQSRHMFGAVALVVRGGCNFTEKVLRAQTAGAIGVVVTDSVPSEN--WAILMSGGSDDETKAITIPSVFVSQQSGRELWRIVGGRMG---VFVTLNSTGQIMLGGRADAL-EQLIVYLVVSLVLLAISGFCGLFLALGIQRCQRHYRTRALKALRTYRF-RSDSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRVAARGAREYGDSGSPIAAAATXXXXAEGQGEAGGAVGDTLV---------TCAVCLDDYEEGDVLKVMPCGHAFHAACIDPWLRDKSGRCPMCKAEALS 903
            P  P  ACE   GQ   + G VALV+RG CNF  KV  AQ A A  VVV D+       + I+M    DD   ++ IPSVF+S  SG  L   +        + +T+++ G++     ++ L +++I Y+ +  ++ A S    L  +   Q   +  RTRA K L   ++ R+                                              A    RE  +S S              Q E  GA  +T           TC +CLDD+E+G  +KV+PC H FH  CI+PWL  +SGRCP+CK +A++
Sbjct:   57 PVSPFTACEPLRGQD--LTGKVALVLRGDCNFVHKVWHAQRAHAAAVVVMDNELRHEPPYHIIMM--KDDMASSVRIPSVFISYASGEWLLDAMSRAAPWDPLRITIDTNGELPQASTSNRLLKRVIAYVFLISIVCAFSSGLSLLSSAVFQWVGKTRRTRAAKQLPIAKYERNMQRTLLEHLLEDQFVLDRIPLTEIENVSSAENHVQAVSEPEFSTADATASPRETENSLSDDGGVYVERERLAEQQEEEGAKDETTYRSSMDSDSETCTICLDDFEDGADVKVLPCQHFFHVDCINPWLERRSGRCPLCKQDAIA 370
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BLAST of mRNA_P-wetherbeei_contig685.1.4 vs. uniprot
Match: A0A7V2U916_9BACT (A-macroglobulin complement component n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V2U916_9BACT)

HSP 1 Score: 109 bits (272), Expect = 5.430e-20
Identity = 66/147 (44.90%), Postives = 91/147 (61.90%), Query Frame = 2 
Query: 1433 VHGAELPRLRIRVEPTKDSHGYGEEALALVTVERAGGGAPTGAAVVVIARVDGEEVYRSAAGIHAMPTTGALTVAAPLPAVWGHGAGTLAATIMDGGVVESSAATLSLVASALDIAVFPKGGDLVADLLNRVYVEGFLSSAEPATFA 1873
            +     PRL+ ++   +D +G GE+  A + V RA GGAP GA V  IARVDGEEV+R AA + A    G   VA  LPA    G G+LA  I DGGVVE++A T+ ++   LD++++P+GG+LVA L +RVY+E      +PA  A
Sbjct:  142 IRAYRAPRLKSQIVFLRDGYGPGEQVSATLHVTRAEGGAPEGAKVTPIARVDGEEVFRGAARVDA---AGNCVVAFKLPARIARGEGSLAMIIEDGGVVETAAKTIPILLQTLDLSIYPEGGELVAGLPSRVYIEAKRPDKKPADIA 285
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BLAST of mRNA_P-wetherbeei_contig685.1.4 vs. uniprot
Match: A0A1V9Z3Q8_9STRA (Caltractin n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z3Q8_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.920e-19
Identity = 92/313 (29.39%), Postives = 132/313 (42.17%), Query Frame = 1 
Query:    1 PFHPKNACEDEGQSRHMFGAVALVVRGGCNFTEKVLRAQTAGAIGVVVTDSVPS---ENWAILMSGGSDDETKAITIPSVFVSQQSGRE-LWRIVGGRMGVFVTLNSTGQIMLGGRADALEQLIVYLVVS-----LVLLAISGFCGLFLALGIQRCQRHYRTRALKAL--RTYRFRSDSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRVAARGAREYGDSGSPIAAAATXXXXAEGQGEAGGAVGDTLVTCAVCLDDYEEGDVLKVMPCGHAFHAACIDPWLRDKSGRCPMCKAEALSG 906
            P  P +AC D  ++  + G +ALVVRG CNF  K L+AQ A A  +VV D  P    E W + M   SD     I+IPSVFVS Q+G+E L  +    +   +TLNSTG+ +   R  +L + IV  V+S     ++L  +   C + L+      QR  R+RA K L  + Y+ ++D                                                                                      C++CL+ +E+   +KV+PC H FH  CIDPWL +++G CP+CK EAL G
Sbjct:   56 PAEPFDACGDALEN-DLTGKMALVVRGKCNFAWKALQAQKANATAIVVMDDKPKTSDEVWGVHMI--SDGNASEISIPSVFVSYQTGQEILEHLQTPSLPPLITLNSTGRGVAVFRQHSLFEGIVLYVLSTSVMFVLLRQVDALCFI-LSKIFGWFQRTARSRAAKRLPMKKYQMKADEDM-----------------------------------------------------------------------------------CSICLETFEQDMWVKVLPCAHEFHDNCIDPWLENRNGNCPLCKREALEG 281
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BLAST of mRNA_P-wetherbeei_contig685.1.4 vs. uniprot
Match: H3GM53_PHYRM (RING-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GM53_PHYRM)

HSP 1 Score: 103 bits (256), Expect = 3.540e-19
Identity = 93/319 (29.15%), Postives = 136/319 (42.63%), Query Frame = 1 
Query:    1 PFHPKNACED-EGQSRHMFGAVALVVRGGCNFTEKVLRAQTAGAIGVVVTDSVPSEN--WAILMSGGSDDETKAITIPSVFVSQQSGRELWRIVGGRMG---VFVTLNSTGQIMLGGRADAL-EQLIVYLVVSLVLLAISGFCGLFLALGIQRCQRHYRTRALKALRTYRF-RSDSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRVAARGA--REYGDSGSPIAAAATXXXXAEGQGEA--------GGAVGDTLVTCAVCLDDYEEGDVLKVMPCGHAFHAACIDPWLRDKSGRCPMCKAEALS 903
            P  P  ACE   GQ   + G VALV+RG CNF +KV  AQ A A  VVV D        + I+M    DD   ++ IPSVF+S  SG  L   +        + +T++S G++     ++ L +++I Y+ +  ++ A S    L  +   Q   +  RT A K L   ++ R+                                            R A   A   E G+ GS           +  Q E           +      TC +CLDD+E+G  +KV+PC H FH  CI+PWL  +SGRCP+CK +A++
Sbjct:   45 PVSPFTACEPLRGQD--LTGKVALVLRGDCNFVQKVWHAQRAHAAAVVVMDDELRHEPPYHIIMM--KDDMASSVRIPSVFISYASGEWLLDAMSRAAPWNPLVITIDSNGELPQASTSNRLLKRVIAYIFLISIVCAFSSGLSLLSSAIFQWMGKTRRTHAAKRLPIAKYERNMQRALLQHLLEDQFVLDRIPLAEIENVSSHETHIREQGEQEPLFRTAEANASPHENGNVGSDDINLGNEKQQSSVQNEELVKKRTTYRSSSDSESETCPICLDDFEDGADVKVLPCQHFFHVDCINPWLEGRSGRCPLCKQDAIA 359
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BLAST of mRNA_P-wetherbeei_contig685.1.4 vs. uniprot
Match: A0A0P1A9D1_PLAHL (RING-type domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A9D1_PLAHL)

HSP 1 Score: 100 bits (250), Expect = 1.370e-18
Identity = 87/308 (28.25%), Postives = 129/308 (41.88%), Query Frame = 1 
Query:    1 PFHPKNACEDEGQSRHMFGAVALVVRGGCNFTEKVLRAQTAGAIGVVVTDSVPSEN--WAILMSGGSDDETKAITIPSVFVSQQSGRELWRIVGGRMGVF----VTLNSTGQIMLGGRADAL-EQLIVYLVVSLVLLAISGFCGLFLALGIQRCQRHYRTRALKALRTYRFRSDSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRVAARGAREYGDSGSPIAAAATXXXXAEGQGEAGGAVGDTLVTCAVCLDDYEEGDVLKVMPCGHAFHAACIDPWLRDKSGRCPMCKAEALS 903
            P  P  ACE       + G VALV+RG CNF +KV  AQ A A  V+V DS       + I+M    D +  +I IPSVF+S  SG  L   +  R   +    +TLN+ G++     ++ L +++I Y+       A S    L  +   Q   +  RTRA K L   ++  +                                          + +              + +  T    A+   E          TC +CLDD+E+G  +KV+PC H FH  CI+PWL  +SGRCP+CK +A++
Sbjct:   54 PVSPFTACEP--LHGDLTGKVALVLRGECNFVQKVWNAQRAHAAAVIVMDSELRHEPPYHIIMM--KDSKANSIHIPSVFISYTSGEWLLLAIS-RAAPWDPPQITLNAYGELPQASTSNRLLKRVIAYIC------AFSSGLSLLSSAIFQWVSKSRRTRAAKKLPVAKYERNMQRTLLEHLLKDEYVLDRIFLNCTTSEDGGSDAKICLENDKGIEMQKE---------DRVNSETTYRGSADSDTE----------TCPICLDDFEDGTDVKVLPCQHFFHINCINPWLEGRSGRCPLCKQDAIA 331
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BLAST of mRNA_P-wetherbeei_contig685.1.4 vs. uniprot
Match: W2FV22_PHYPR (RING-type domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2FV22_PHYPR)

HSP 1 Score: 100 bits (250), Expect = 2.170e-18
Identity = 90/324 (27.78%), Postives = 138/324 (42.59%), Query Frame = 1 
Query:    1 PFHPKNACED-EGQSRHMFGAVALVVRGGCNFTEKVLRAQTAGAIGVVVTDSVPSEN--WAILMSGGSDDETKAITIPSVFVSQQSGRELWRIVGGRMG---VFVTLNSTGQIMLGGRADAL-EQLIVYLVVSLVLLAISGFCGLFLALGIQRCQRHYRTRALKALRTYRFRSDSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRVAARGAREYGDS----------------GSPIAAAATXXXXAEGQGEAGGAVGDTLVTCAVCLDDYEEGDVLKVMPCGHAFHAACIDPWLRDKSGRCPMCKAEALS 903
            P  P  ACE   GQ   + G VALV+RG CNF +KV  AQ A A  VVV D+       + I+M    D+   +I IPSVF+S  SG  L   +   +    + +TL++ G++     ++ L +++I Y+ +  ++ A S    L  +   Q   +  RTRA K L   ++  +                                            + A  + + GD+                  P     T     + + E          TC +CLDD+E+G  +KV+PC H FH  CI+PWL  +SGRCP+CK +A++
Sbjct:   57 PVVPFTACEPLRGQD--LTGKVALVLRGDCNFVQKVWHAQRAHAAAVVVMDNELRHEPPYHIIMM--KDEMASSIRIPSVFISYVSGEWLLDAMSRAVPWNPLRMTLDTNGELPQASTSNRLLKRVIAYIFLISIVCAFSSGLSLLSSAIFQWVGKTRRTRAAKQLPIAKYERNMQRTLLEHLLEEQFVLDRIPLAEIENVSKTSDRHTETEPDFSTEMTA--SSQEGDTVPDDIYLEKEEQMQQKEEPQTDGITYRSSTDSEAE----------TCPICLDDFEDGADVKVLPCQHFFHVDCINPWLEGRSGRCPLCKQDAIA 364
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig685.1.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL22_ECTSI4.140e-3636.93RING-type domain-containing protein n=2 Tax=Ectoca... [more]
W7TBK1_9STRA4.210e-3333.33Protease-associated RING/U-box zinc finger-contain... [more]
A0A4D9CZZ7_9STRA1.490e-3233.53RING-type domain-containing protein n=1 Tax=Nannoc... [more]
A0A835YLK1_9STRA2.520e-2142.95A2M domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6A3F683_9STRA2.920e-2029.56RING-type domain-containing protein n=3 Tax=Phytop... [more]
A0A7V2U916_9BACT5.430e-2044.90A-macroglobulin complement component n=1 Tax=Planc... [more]
A0A1V9Z3Q8_9STRA1.920e-1929.39Caltractin n=1 Tax=Achlya hypogyna TaxID=1202772 R... [more]
H3GM53_PHYRM3.540e-1929.15RING-type domain-containing protein n=1 Tax=Phytop... [more]
A0A0P1A9D1_PLAHL1.370e-1828.25RING-type domain-containing protein n=1 Tax=Plasmo... [more]
W2FV22_PHYPR2.170e-1827.78RING-type domain-containing protein n=12 Tax=Phyto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig685contigP-wetherbeei_contig685:728..7464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LL22
PFAMsPA,zf-RING_2
Model size5646
Max annot lvl2759|Eukaryota
KEGG koko:K15692,ko:K19041
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.21e-40
EggNOG OGsKOG4628@1|root,KOG4628@2759|Eukaryota
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-27_000830.1
EC2.3.2.27
Descriptionprotein modification by small protein conjugation or removal
Cds size1023
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig685.1.4prot_P-wetherbeei_contig685.1.4Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig685 776..2237 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186941.4743326-UTR-P-wetherbeei_contig685:727..7751683186941.4743326-UTR-P-wetherbeei_contig685:727..775Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig685 728..775 +
1683186941.5167806-UTR-P-wetherbeei_contig685:2237..26541683186941.5167806-UTR-P-wetherbeei_contig685:2237..2654Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig685 2238..2654 +
1683186941.528233-UTR-P-wetherbeei_contig685:2992..63661683186941.528233-UTR-P-wetherbeei_contig685:2992..6366Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig685 2993..6366 +
1683186941.5399108-UTR-P-wetherbeei_contig685:6680..74641683186941.5399108-UTR-P-wetherbeei_contig685:6680..7464Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig685 6681..7464 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186941.486032-CDS-P-wetherbeei_contig685:775..14971683186941.486032-CDS-P-wetherbeei_contig685:775..1497Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig685 776..1497 +
1683186941.5037022-CDS-P-wetherbeei_contig685:1936..22371683186941.5037022-CDS-P-wetherbeei_contig685:1936..2237Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig685 1937..2237 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig685.1.4

>prot_P-wetherbeei_contig685.1.4 ID=prot_P-wetherbeei_contig685.1.4|Name=mRNA_P-wetherbeei_contig685.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=341bp
MFGAVALVVRGGCNFTEKVLRAQTAGAIGVVVTDSVPSENWAILMSGGSD
DETKAITIPSVFVSQQSGRELWRIVGGRMGVFVTLNSTGQIMLGGRADAL
EQLIVYLVVSLVLLAISGFCGLFLALGIQRCQRHYRTRALKALRTYRFRS
DSAAAATAGAAAAAETAVGGTAGAAGAAGARAEGAVGPGGAAGVRVAARG
AREYGDSGSPIAAAATAVAAAEGQGEAGGAVGDTLVTCAVCLDDYEEGDV
LKVMPCGHAFHAACIDPWLRDKSGRCPMCKAEALSGRQRSAAAATNGGGG
LEAIATDLILMTQENWRLWTWTAAVMTTAAVLRFAALEGR*
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mRNA from alignment at P-wetherbeei_contig685:728..7464+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig685.1.4 ID=mRNA_P-wetherbeei_contig685.1.4|Name=mRNA_P-wetherbeei_contig685.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=6737bp|location=Sequence derived from alignment at P-wetherbeei_contig685:728..7464+ (Phaeothamnion wetherbeei SAG_119_79)
CCATTCCACCCCAAGAACGCTTGTGAAGACGAAGGCCAGAGTCGCCACAT
GTTTGGCGCCGTGGCATTGGTCGTGCGGGGAGGCTGCAATTTCACCGAAA
AGGTATTGCGCGCGCAGACGGCGGGCGCCATCGGCGTCGTCGTCACGGAT
TCCGTTCCGTCAGAAAATTGGGCAATTCTCATGAGCGGCGGCTCGGACGA
CGAGACGAAAGCTATCACCATCCCCAGCGTCTTCGTTTCGCAGCAGAGCG
GCCGCGAGCTGTGGAGGATTGTCGGAGGCCGCATGGGCGTCTTTGTGACG
CTCAACAGCACGGGCCAAATCATGCTCGGAGGACGGGCGGACGCCCTGGA
GCAGCTAATCGTCTATTTGGTCGTGTCGCTCGTGCTCTTGGCGATCTCGG
GCTTCTGCGGCCTCTTTCTCGCCCTCGGGATCCAGCGCTGCCAGCGGCAC
TATCGCACGCGGGCGCTGAAAGCCCTCCGGACCTACCGTTTCCGCAGCGA
CAGCGCAGCGGCGGCAACGGCCGGAGCAGCGGCGGCGGCAGAGACAGCAG
TGGGGGGAACAGCGGGAGCAGCGGGAGCAGCAGGAGCGCGGGCAGAAGGA
GCGGTGGGGCCGGGAGGAGCAGCGGGAGTCAGGGTTGCTGCTCGAGGAGC
CAGAGAATATGGCGACAGCGGCAGCCCAATTGCCGCTGCTGCAACGGCGG
TAGCGGCTGCTGAAGGCCAGGGCGAAGCGGGAGGAGCGGTGGGTGACACG
CTCGTCACTTGCGCTGTCTGGTGAGCAGTCCATTGGCTTGTTTTGCGAAT
GCAAAGGCGAGCACGTGCTTCTAGTTGTAACCGCTCGTCAGTTTTGTCCT
TTCTCGTTTGTTTGCGGAACTGTGCGCCGCTCAGGCGTTGCGTGTTTGCC
TCTGTGTTTGCGCCGTTGTTGTCATTTTAAAGAAGCTTCGCAGCCTCAGC
GACGTGTCAATATTCTGAGTTGTTGTGTTCTTATTTCCACCCTTTTAAGT
GTTCCCGTTGGCTGCCGGCATGGGACTTGTAGAAACCAGTTAGCGTGGCG
TGGCCGTCTGAACTCAGTGTGCGTTCCTACTTCTCACCCTCTTTTCCTCG
CATATTTCTTACCTTGTCCCCCGCTCCACCCTTATCATTTTTTCCCTTTC
CCTCCCGCTTCCTTATTTCCTCCCATTCTGTCCTTCTTCCGGGGGCACAA
CAAAACCAGTCTGGACGACTACGAGGAGGGCGATGTATTAAAAGTGATGC
CGTGCGGCCACGCATTCCACGCTGCTTGCATCGACCCGTGGCTCCGGGAC
AAGTCCGGCCGCTGCCCGATGTGCAAGGCCGAAGCTTTGTCGGGGCGGCA
GCGGTCGGCGGCAGCGGCGACGAACGGCGGCGGTGGGCTCGAGGCCATAG
CCACCGACCTGATCTTGATGACGCAGGAGAACTGGCGGCTGTGGACGTGG
ACGGCCGCCGTCATGACGACGGCAGCGGTGCTACGGTTCGCCGCCTTGGA
AGGCAGGTGAGGGGCGCCGGCGAGCGTCGCTGCCTCTGCGTTTTCGGCGG
GTGGTGGAACAAGTGGTTGGCTGCCGGGTCGGATCCGCGTGTTATTATAT
AGATAGGGGTGAGAGGATGGGCAGGAAGAAAGGAGGCAGGGCAGTCGATT
CGGGTCACGCTGCTGCGGGATATGGTTGGCTTCTCAGAGGTGCTACCTGG
TGCGCCGTTTAGAAAGCTGTTGGGGTGCCGATAAGGAAGAGATGTGTTCG
ACGTCGTCTCTTCTCCTCCAGTGAGTGTTGTGGCTCTGCGACGGATCCGG
ACAGGACCAGCCGTCTAGGCGTCGTCCATCTACGTCCGCGGAAAAGATAC
TGCAGGCTCGGCCGAGCGGGCGTTCACGGTGCGGAGCTGCCGCGCCTCAG
GATTCGCGTCGAGCCCACCAAGGACAGGTGAAAGGAAGAAAGGAGGACTT
GGATTGGATTTGGAGTTGGATGGGGAACTGTGTGCACCGTCGAGGTCGAA
GCCGCTGCTGCGTTCTCCGTTCAAGCAGCAGTTGGTATGTGCATCCACCT
CACCTCTCCGTTTTCAGCCGCTTACTTTCTTAGAGGTTCATGCTCCATGC
TCGATTGATGCTGCTCCAAGCTGCTGCAGTTTATTTAGGCTTCTTTTCGC
TCTTTGTTCCTCGTCTTCAACCTCATGACGTGTTTCTGATTGCCCAACCG
CCCCGCCACTTCCTTTTGGCGCACCGTTACTGCACCGTTACCGCAACATT
TCACCGCCGCAACAGCCACGGTTATGGCGAGGAGGCGTTGGCCCTGGTGA
CGGTGGAGCGGGCCGGGGGAGGCGCCCCCACCGGTGCCGCCGTCGTCGTC
ATCGCCCGTGTCGACGGCGAGGAAGTCTACCGCAGCGCCGCTGGCATCCA
CGCCATGCCGACCACCGGCGCGCTGACGGTGGCGGCGCCGCTGCCCGCCG
TCTGGGGCCATGGCGCTGGCACGCTGGCCGCCACCATCATGGACGGCGGC
GTGGTCGAGTCGTCCGCGGCGACGCTCTCGCTGGTGGCTTCGGCCCTCGA
CATTGCCGTGTTCCCAAAGGGCGGCGACCTTGTCGCCGATTTGCTGAACC
GAGTCTACGTGGAGGGCTTCCTGTCGTCAGCCGAGCCGGCTACATTCGCC
GTTGAGCGTCCGCGGCGGCGGCGCAAAGTCGGACTGCGTGGTGTTGGCTG
AGGCGAAGCACGAGGGCCGTGGCTTCAGCATATTCTTCGCGCCCCACGCC
GGCACCGAGTATGAGCTGCGGCTGACGCGGCCGTCGGCGCTCCGACGCCC
AAAGCCCGAGGCGCGATGCTGTCCATTCCCGCAGGCGACCATTCGTGACG
TGGCGGCGCCGGCGGCGGTGGTGGCGGCGGCGCCAGCGCCGCCGCCAGCG
TCCAGGTCGCCGTGGCCGCCACAGACGGGGGGTGTACCGGCTGGCGCTGT
ACCGCCGTGAGATGGAGGTGGCGTCGGCGTTGGTCCACCTGGAGGGCAAG
AGCGCCGGCACGGGCCGCGGCCAGCGCTACCACGGCCAGCGCTACCGCGG
CGGCGACGCCTGGAGAGACAGCTGAGACTGTGACAGCGTGCGGTAGATTG
CAACGACGCTCGCCGGTTTGTCGGGCAGCGAGGGCGTCCTTCTCGCGACG
CTGTTCGGTTTTGACGGACGGCCCATCGCGGAGCGGCTCGTCCTGCGCGA
ACCGTCGCAGCGGTTGCGGATCAGCATGACCGCTGATCCTGGCGCCGGAA
ACGGCACCGTTGGCATCGTCAATGAGGGCGGCGCTGCAGGCGACGAGCGT
AATGCCACCGCTGGCGCCCTTCGACCACGTTCCTACCAGGCGGCCGCGTG
CGGCTGACGGTGACGGCGCGGCACGAGGCTGGCGGTCATTCGGCGGCGGG
CGCTCGCGTCGGCGTCACCGTGACGAACGATCGGGCCCTAACGCAGGGCT
CGCGGCGGAACGAGCACCCGTGGCTGCTGGCGATGGTGCTGCTGGAGACC
GACGTGGACGAGCTGAAGGACCCCGCCGCCTACCTTCCGCCGTTGGATAG
CAGCGCCGCAACCGCCGCCACCATCGAAAAGACGGACCGGGAAATGAGGT
ACGGAATGGAGACGGATCGTGCCGGAATAGCAAAGGCGGTGGATCTGCTC
CTGGGAACGCGCGGCTGGCGGCGCTTCGCCTACGAGGACCGGTTCGCCTT
TCTCGAGACCGGGATGGCGGGCGGTAACGGCAAGAACGGCGAAGGCGGCA
GCATTTCAGCTGGCGCTGACGGCACCGGCGACGGCACCGGCGGCGGCGGT
GAAGGTGAGGTGCCGTTCGAGAACGTTCGTCAGCGCGTCATGGGCATCGG
GCTCCCGCATCACCGCGGCGACACGGATGTCGCCCGCTTTGGGTGGAAGC
ACTTTGCTGCTCCGCCAGTTGCTACAATGGCGGCGGCACGGATGGAGATG
GCGGCGCACATGTCGGGTTTGCTGCCAGCGCCGGTTGCAATAACGACGGT
GCCGCCGGTGCAGGTGAGATCGCCATCGACTGCGCTAACGGCGGTCCGGA
CCCGATGTCCGCATCCAGTGGCTACCCGGAGGCTGCCCCTCCTGCCAATG
GCGACGGCGGTTCCGGCGACTTCAGCGGCGAAGGCAGCGGGAGCGACAGT
GGCGGAGCGGAGGAAAGTGCAGGCGGCGACGTCGCGTTCATCGCGTTCGA
TGAGATGATGGCAGCGGAAGACGATGTCATGGGCGGGGTGGCAGTGGCAG
CCAAGAGAACCGCCGTCCCCGACATCACACGCGTCGCCGGCATCGTCGCC
AACGACCACTTCACCGAAGAATTGTCTGCCTGGCGGCGCAGAGTTGACCC
GTGGGACGTCGATCGCGTTTACAACCACGGCCGCCGCGACGATTCCGCCG
CCGCCGCCGGCGCTGCCGAGGGCACCAACGTGTACCCGCCCCACCGGAGC
GACTTCACGGAGACGGTGCTCCTCACGACGAACGTGTGGCTGGACGAGAG
TGGCCGCGGCGTGGTCGAGTTCGAGCTGTGAGACTCGGTGACGATGCTCC
TGGCTCGGGCCGATGCCTTCACGGCGCAGGGCGCGCGCTGGGCAGCGGCG
ACCTGGCGCTGAGCAGCGAGCTTCCATTCTTCATGGAGGCCAAGCTGCCG
ACGGCCGGCGAGACACCATCCTGGTAGGCGTGTCGGGCTCTGTGTCTGCG
GCGGTCCTGAAGGCGATGATGGTAACGGCGGCCGCGCCCGGGTTGTCCAT
CCGCCAGCCGAAGTTGCAGATGGCGCGGGCCGTTGTGGGCATCAGCGGCG
GCGGCGGCGGCGGCAGCAGTGGCGGCGGCGTCATGTCTCTCCTGGCTATG
ATGGACCAGAATTTGGCGAATGAAAGTGAAAGGTGCGTAGCGAGACTCTT
TGGTGATGGCTCGCAAGAGATGGAACGGTGGATGGAAACGAAGGTCTACA
TACTATTTTGCCCCTCCATCGGTTCGGACAGTGCCAGCAGCGTTCCGGAG
GTTGGCGGAACCACGTGAAACATCTGGAGGCATATTGGCACCAGAAGGAC
GAATCCGGCCGGTCGATCTTGCCGCTCGTGGCCAACAGCGGCGGCTTCAG
CAGCGACGGCCCCGCCACAGCCGTCACCGTCGACGTTTCCATCGAAGGCA
TGCTGGAGCCCACCTTACCTATTGGGGCGGCGCTTCTGCTGGCGCCGACT
CCGTCTTGCATGTTGTCCGGATCGTGCCCGCCGTCTTTCCCGTCGAAGCG
GCATCCGGCAATATGCTGACACCCAGCAACGATGGCGGCGGCCGCAGCGG
CCATAGCGACGTGATGCACTTCACGCTGCCGGAAGATGTCCTGCCGTGGA
CGTTGCGGCTGGCGGCGGCTGTACCCGACGCCCGTGGCGCTGCTGTCGGT
GGCGCTGAAGCGCCTCGTCCGGGGGACATATGGCTGCTTCAAGCATACGT
CCTCCGTGACCTACCTGATGGCGATCCGCTACATCGAGACCCATCCGGAA
CGCACGTTTGACACGGCGAGGGAGAAGGCGCGCACGCTGCAGGCGAACGG
CTATCGGAAGTTCGTCCGTTAGAAGTGGCCGGCGGCGGCTTCGAGTGATT
CGGGCAAGCTCCTGTGCACGAGGCGCTGACGGCCTACGGGTGAGTGGTTC
GTTTGGTGGCAGGTGTTGTGCCTGAGCTTTGCAATGGTGGGGTTTATTTG
ATTGATCCTGCTCTTCTTCACACAGGCCATTCCTCTAAAGCGTGAGCTTG
CTGTTAATTGAACGTTATCCTTCGGCTGCTGCCGCTTTTGCCGTCTTCGC
CGCCCCCTGCTGCCCCGCTCCCGCCGCCGCCGCCGGTGCTGCCATTCTTG
CTACCGCCCCATTCGCCGCTACGCCCTGCCCGCGCTCCCACCGCTGCCGC
CGTTATTCTTCTACGATCGCCCTTCCAATCCCTTCCTCCGCCCCGCTCTA
CAGCGTGCTGCAGTTTTGGACATGCGGAAGGTGATGGCGATCGCCCCGGA
CATCTTGAAACGTGCCACCGCCTGGATCCTCTCCCGCCGCGACGGCGACG
GCGGCTTCCTGCGCAGCTCCACTCACCTCGATCATTGCGGCGGCGCCCCC
GCTGACGTAATGGACGCCTACATCCTGTTCTCGCTAGTCTCGGCGGCGGG
CGTGCCGGGCCTCCACCATGAGATCGACATGCTGATGACCCGCGTGTCGA
CGCCGACGTTCAAGGACGACGCGTACATCATCGGGCTGGCGACAGCGACG
GCGGCGGAGGTGGGCGGCGTTAAGACGCTGCTGAAGCGCTGGCGGGCGCT
GCTGCTGACGTGGCAGCGGGCCGACGGCTGCGTGACGGAGGCCGAGACGA
GCATCACCAACGCGCGCGGGCGGTCGCTGGAAGTGGAGACGACCGCGATT
GATGCGCTGACATGGCTGCAGCGCCCGGGCGAAGAGTACGTCCGACCGGT
CGAAGCCGCACTCCGGTTGTTTGTAGTTTTATGATGACGGTGACACAGAG
GTGGCAGCTGCATAAGCCGTCTGGAGTCCAGAGGGATGTTAATACGCGTA
TACTTGTGAGGTGAAGGCATGTGTCAAGCGCCATAAGACTGGACAGGAGG
ATAGCACAGTTGTAGCATGGCAGCAGGACGGGCAGGGAGGTGTAGGTCGA
ACGCAAGGCAGTCCGCGGAGACAAAGAAAACGCCGTTCTTGTTCATGAAG
AAGATCGAGACCAAATAAGATGTATCACTCCCGCTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig685:728..7464+

>mRNA_P-wetherbeei_contig685.1.4 ID=mRNA_P-wetherbeei_contig685.1.4|Name=mRNA_P-wetherbeei_contig685.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1023bp|location=Sequence derived from alignment at P-wetherbeei_contig685:728..7464+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTGGCGCCGTGGCATTGGTCGTGCGGGGAGGCTGCAATTTCACCGA
AAAGGTATTGCGCGCGCAGACGGCGGGCGCCATCGGCGTCGTCGTCACGG
ATTCCGTTCCGTCAGAAAATTGGGCAATTCTCATGAGCGGCGGCTCGGAC
GACGAGACGAAAGCTATCACCATCCCCAGCGTCTTCGTTTCGCAGCAGAG
CGGCCGCGAGCTGTGGAGGATTGTCGGAGGCCGCATGGGCGTCTTTGTGA
CGCTCAACAGCACGGGCCAAATCATGCTCGGAGGACGGGCGGACGCCCTG
GAGCAGCTAATCGTCTATTTGGTCGTGTCGCTCGTGCTCTTGGCGATCTC
GGGCTTCTGCGGCCTCTTTCTCGCCCTCGGGATCCAGCGCTGCCAGCGGC
ACTATCGCACGCGGGCGCTGAAAGCCCTCCGGACCTACCGTTTCCGCAGC
GACAGCGCAGCGGCGGCAACGGCCGGAGCAGCGGCGGCGGCAGAGACAGC
AGTGGGGGGAACAGCGGGAGCAGCGGGAGCAGCAGGAGCGCGGGCAGAAG
GAGCGGTGGGGCCGGGAGGAGCAGCGGGAGTCAGGGTTGCTGCTCGAGGA
GCCAGAGAATATGGCGACAGCGGCAGCCCAATTGCCGCTGCTGCAACGGC
GGTAGCGGCTGCTGAAGGCCAGGGCGAAGCGGGAGGAGCGGTGGGTGACA
CGCTCGTCACTTGCGCTGTCTGTCTGGACGACTACGAGGAGGGCGATGTA
TTAAAAGTGATGCCGTGCGGCCACGCATTCCACGCTGCTTGCATCGACCC
GTGGCTCCGGGACAAGTCCGGCCGCTGCCCGATGTGCAAGGCCGAAGCTT
TGTCGGGGCGGCAGCGGTCGGCGGCAGCGGCGACGAACGGCGGCGGTGGG
CTCGAGGCCATAGCCACCGACCTGATCTTGATGACGCAGGAGAACTGGCG
GCTGTGGACGTGGACGGCCGCCGTCATGACGACGGCAGCGGTGCTACGGT
TCGCCGCCTTGGAAGGCAGGTGA
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