mRNA_P-wetherbeei_contig6841.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6841.1.1
Unique NamemRNA_P-wetherbeei_contig6841.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6841.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6841contigP-wetherbeei_contig6841:521..1175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1403819.BATR01000053_gene1627
PFAMsAnp1,Gly_transf_sug,Glycos_transf_2
Model size255
Max annot lvl2|Bacteria
KEGG rclassRC00005
KEGG koko:K00694
KEGG TC4.D.3.1.2,4.D.3.1.5,4.D.3.1.6
KEGG ReactionR02889
KEGG Pathwayko00500,ko01100,ko02026,map00500,map01100,map02026
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000341
EggNOG OGsCOG0463@1|root,COG1215@1|root,COG3774@1|root,COG0463@2|Bacteria,COG1215@2|Bacteria,COG3774@2|Bacteria
EC2.4.1.12
Descriptionpathogenesis
Cds size240
COG categoryM
CAZyGT2
BRITEko00000,ko00001,ko01000,ko01003,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186941.254184-CDS-P-wetherbeei_contig6841:520..7161683186941.254184-CDS-P-wetherbeei_contig6841:520..716Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6841 521..716 -
1683186941.2776642-CDS-P-wetherbeei_contig6841:1116..11601683186941.2776642-CDS-P-wetherbeei_contig6841:1116..1160Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6841 1117..1160 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186941.2892408-UTR-P-wetherbeei_contig6841:1160..11751683186941.2892408-UTR-P-wetherbeei_contig6841:1160..1175Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6841 1161..1175 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6841.1.1prot_P-wetherbeei_contig6841.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6841 521..1160 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6841.1.1

>prot_P-wetherbeei_contig6841.1.1 ID=prot_P-wetherbeei_contig6841.1.1|Name=mRNA_P-wetherbeei_contig6841.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=80bp
MITGKSPDREALAQRSLSDFQRQTYPSKALVILAENAFQLDTRNDPCMLQ
MAVRPAAGQRLGQLRNYALAAVPTGAIWVQ
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mRNA from alignment at P-wetherbeei_contig6841:521..1175-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6841.1.1 ID=mRNA_P-wetherbeei_contig6841.1.1|Name=mRNA_P-wetherbeei_contig6841.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=655bp|location=Sequence derived from alignment at P-wetherbeei_contig6841:521..1175- (Phaeothamnion wetherbeei SAG_119_79)
CTTGTGTATGGGATTATGATCACTGGCAAATCGCCGGACAGGGAGGCCCT
TGCGCAGAGGTAAGCCCTGAAAGAAGTAAATATGCACTGGGCAGAAGCAA
TTCAAATCATGAGAGGGAAAACGAACAAGCCTTGGCTGCTTGCGTCCGCG
TTGTTACTCTGAGTAAAGCAGCTAGAAACTCTATTGTGCTGCGCCGCGGA
CCACCCAATTCTTGTCGTGGATTCGCTTACCGGTACTACTAGATCCTGCC
TGATTCGATGACCGAAAGTCTCGCGGCGCTTCTTATTTTTGCCTCGTGGG
GGTTACATTGTCCTTTCTGATGCTTTGCGGCCGTATGCATCGCCCAAGAG
AACTTTTCGCTCTAGCGTTTCCTCTATTATTTCTTCCTCCCTCTCCGCTG
CCTGTCGTGCACATGGGCGGCAACCACCGGCGGCTGCGAAACGGCAATTC
CCCGCGCAGGTCGCTCTCCGACTTCCAGCGGCAGACCTACCCGTCGAAGG
CACTCGTGATCCTGGCGGAAAATGCCTTTCAGCTGGACACGCGAAATGAT
CCGTGCATGCTGCAGATGGCGGTGCGGCCGGCCGCCGGGCAGCGGCTAGG
GCAGCTCCGCAACTATGCGCTGGCGGCGGTGCCGACCGGCGCCATCTGGG
TGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6841:521..1175-

>mRNA_P-wetherbeei_contig6841.1.1 ID=mRNA_P-wetherbeei_contig6841.1.1|Name=mRNA_P-wetherbeei_contig6841.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig6841:521..1175- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCACTGGCAAATCGCCGGACAGGGAGGCCCTTGCGCAGAGGTCGCT
CTCCGACTTCCAGCGGCAGACCTACCCGTCGAAGGCACTCGTGATCCTGG
CGGAAAATGCCTTTCAGCTGGACACGCGAAATGATCCGTGCATGCTGCAG
ATGGCGGTGCGGCCGGCCGCCGGGCAGCGGCTAGGGCAGCTCCGCAACTA
TGCGCTGGCGGCGGTGCCGACCGGCGCCATCTGGGTGCAG
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