mRNA_P-wetherbeei_contig6839.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6839.3.1
Unique NamemRNA_P-wetherbeei_contig6839.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6839.3.1 vs. uniprot
Match: UPI0019A2E0E7 (Fluoride efflux transporter CrcB n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI0019A2E0E7)

HSP 1 Score: 175 bits (443), Expect = 2.650e-54
Identity = 82/126 (65.08%), Postives = 100/126 (79.37%), Query Frame = 1
Query:    1 MTASAFMAVGIGAALGAWLRWMLSTWFNPVAPTLPLGTLAANLVGGYLVGVAVAYFAANSSLAPEWRLLCITGFLGGLTTFSTFSAESVQMLMAAQYGSAVLHTSAHLAGSLAATFAGFWTYRTFA 378
            M AS F+AV +GA LGAWLRW LS W NP  P LPLGTLAAN+ G Y +G+AVA+F+ +S +APEWRL+CITGFLG LTTFSTFSAES+++LMA +YG+A +H+ AHL GS+ AT  GF TYR  A
Sbjct:    1 MNASGFVAVAVGAVLGAWLRWGLSIWLNPAHPNLPLGTLAANIGGAYAIGLAVAFFSTHSLIAPEWRLVCITGFLGALTTFSTFSAESMELLMAGRYGAAAIHSGAHLFGSIVATLLGFATYRALA 126          
BLAST of mRNA_P-wetherbeei_contig6839.3.1 vs. uniprot
Match: A0A1Y0G8Q2_9PROT (Putative fluoride ion transporter CrcB n=1 Tax=Sulfuriferula sp. AH1 TaxID=1985873 RepID=A0A1Y0G8Q2_9PROT)

HSP 1 Score: 167 bits (422), Expect = 4.310e-51
Identity = 81/123 (65.85%), Postives = 94/123 (76.42%), Query Frame = 1
Query:    1 MTASAFMAVGIGAALGAWLRWMLSTWFNPVAPTLPLGTLAANLVGGYLVGVAVAYFAANSSLAPEWRLLCITGFLGGLTTFSTFSAESVQMLMAAQYGSAVLHTSAHLAGSLAATFAGFWTYR 369
            M  SAF+A+GIGAALGAWLRW L  W NPV PTLP+GTLAANL+GGYL+G+A+A+FA    L+PEWRLL ITGF+GGLTTFSTFSAE   +L   Q G   L  S HLAGS+A T  G WTY+
Sbjct:    1 MGISAFIAIGIGAALGAWLRWGLGLWLNPVFPTLPMGTLAANLLGGYLIGLAIAFFAQQPGLSPEWRLLIITGFMGGLTTFSTFSAEVFTLLSRQQLGWGALSVSLHLAGSVAMTALGVWTYK 123          
BLAST of mRNA_P-wetherbeei_contig6839.3.1 vs. uniprot
Match: A0A1F4CBF3_9PROT (Putative fluoride ion transporter CrcB n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4CBF3_9PROT)

HSP 1 Score: 163 bits (413), Expect = 1.010e-49
Identity = 81/123 (65.85%), Postives = 97/123 (78.86%), Query Frame = 1
Query:    1 MTASAFMAVGIGAALGAWLRWMLSTWFNPVAPTLPLGTLAANLVGGYLVGVAVAYFAANSSLAPEWRLLCITGFLGGLTTFSTFSAESVQMLMAAQYGSAVLHTSAHLAGSLAATFAGFWTYR 369
            MTA+AF A+GIGAA+GAWLRW L +  NP  PTLPLGTL ANL+GGYL+G+AVAYFA N+++ PEWRL  ITGFLGGLTTFSTFSAE+V +L+ AQY  A     +HLAGSL  T  GF T++
Sbjct:    1 MTAAAFAAIGIGAAIGAWLRWGLGSVLNPAFPTLPLGTLTANLIGGYLIGLAVAYFADNAAIPPEWRLFVITGFLGGLTTFSTFSAEAVTLLVRAQYAWAAGLILSHLAGSLIMTLLGFATFK 123          
BLAST of mRNA_P-wetherbeei_contig6839.3.1 vs. uniprot
Match: A0A258TQ62_9PROT (Putative fluoride ion transporter CrcB n=1 Tax=Hydrogenophilales bacterium 28-61-23 TaxID=1970530 RepID=A0A258TQ62_9PROT)

HSP 1 Score: 162 bits (411), Expect = 1.920e-49
Identity = 78/120 (65.00%), Postives = 92/120 (76.67%), Query Frame = 1
Query:   10 SAFMAVGIGAALGAWLRWMLSTWFNPVAPTLPLGTLAANLVGGYLVGVAVAYFAANSSLAPEWRLLCITGFLGGLTTFSTFSAESVQMLMAAQYGSAVLHTSAHLAGSLAATFAGFWTYR 369
            +AF+A+G+GAA+GAWLRW L  W NP+ PTLP GTLAANL+GGYLVG+AVAYFA +  L PEWRL  ITGFLGGLTTFSTFSAE   ++   Q G A+   SAHL GSLA T  G WT++
Sbjct:    2 TAFLAIGLGAAIGAWLRWGLGLWLNPIFPTLPYGTLAANLIGGYLVGLAVAYFAQHPGLPPEWRLFAITGFLGGLTTFSTFSAEVFTLISRNQLGWALTAASAHLFGSLALTALGVWTFK 121          
BLAST of mRNA_P-wetherbeei_contig6839.3.1 vs. uniprot
Match: A0A1F4AVQ8_9PROT (Putative fluoride ion transporter CrcB n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_63_19 TaxID=1797486 RepID=A0A1F4AVQ8_9PROT)

HSP 1 Score: 162 bits (411), Expect = 2.040e-49
Identity = 82/123 (66.67%), Postives = 96/123 (78.05%), Query Frame = 1
Query:    1 MTASAFMAVGIGAALGAWLRWMLSTWFNPVAPTLPLGTLAANLVGGYLVGVAVAYFAANSSLAPEWRLLCITGFLGGLTTFSTFSAESVQMLMAAQYGSAVLHTSAHLAGSLAATFAGFWTYR 369
            M+ASAF AVG+GAA GAWLRW L +  NPV PTLPLGTLAANL+GGYL+G+AVA+F AN+S+ PE RLL ITGFLGGLTTFSTFSAE+V +LM AQYG  +     HLAGS+  T  G  T+ 
Sbjct:    1 MSASAFAAVGVGAAFGAWLRWALGSALNPVFPTLPLGTLAANLLGGYLIGLAVAFFTANTSIPPEIRLLTITGFLGGLTTFSTFSAEAVTLLMRAQYGWGMALVLGHLAGSMIMTLLGIMTFN 123          
BLAST of mRNA_P-wetherbeei_contig6839.3.1 vs. uniprot
Match: A0A0F0FMW0_9BURK (Putative fluoride ion transporter CrcB n=8 Tax=Burkholderiaceae TaxID=119060 RepID=A0A0F0FMW0_9BURK)

HSP 1 Score: 161 bits (407), Expect = 8.030e-49
Identity = 76/121 (62.81%), Postives = 91/121 (75.21%), Query Frame = 1
Query:   16 FMAVGIGAALGAWLRWMLSTWFNPVAPTLPLGTLAANLVGGYLVGVAVAYFAANSSLAPEWRLLCITGFLGGLTTFSTFSAESVQMLMAAQYGSAVLHTSAHLAGSLAATFAGFWTYRTFA 378
            F+AVG+GAA+GAWLRW+ S  +N   P LP GTL ANLVGGYL+G+A  +F A++ L+PEWRLL +TGFLGGLTTFSTFS+E V  LMA  YG A +H +AHL GSL  T  G WTYR  A
Sbjct:    6 FVAVGVGAAMGAWLRWVFSVLWNAANPALPYGTLTANLVGGYLIGLAAGFFGAHADLSPEWRLLAVTGFLGGLTTFSTFSSEVVANLMAGDYGWAAVHLAAHLGGSLLLTALGLWTYRLLA 126          
BLAST of mRNA_P-wetherbeei_contig6839.3.1 vs. uniprot
Match: UPI001C0002AB (fluoride efflux transporter CrcB n=1 Tax=Cupriavidus sp. EM10 TaxID=2839983 RepID=UPI001C0002AB)

HSP 1 Score: 161 bits (407), Expect = 8.030e-49
Identity = 79/126 (62.70%), Postives = 94/126 (74.60%), Query Frame = 1
Query:    1 MTASAFMAVGIGAALGAWLRWMLSTWFNPVAPTLPLGTLAANLVGGYLVGVAVAYFAANSSLAPEWRLLCITGFLGGLTTFSTFSAESVQMLMAAQYGSAVLHTSAHLAGSLAATFAGFWTYRTFA 378
            M++  F+AVG+GAA+GAWLRW  S  +N   P LP GTLA+NLVGGYL+G+AVA+F  + SL PEWRLL +TGFLGGLTTFSTFS+E V  LMA  Y  A+ H +AHL GSL  T  G WTYRT A
Sbjct:    1 MSSMGFVAVGVGAAVGAWLRWAFSVLWNAANPALPYGTLASNLVGGYLIGLAVAFFETHPSLPPEWRLLAVTGFLGGLTTFSTFSSEVVGNLMAGDYRWALAHLAAHLGGSLLLTGLGIWTYRTLA 126          
BLAST of mRNA_P-wetherbeei_contig6839.3.1 vs. uniprot
Match: CRCB_RALPJ (Putative fluoride ion transporter CrcB n=21 Tax=Proteobacteria TaxID=1224 RepID=CRCB_RALPJ)

HSP 1 Score: 160 bits (406), Expect = 1.140e-48
Identity = 80/125 (64.00%), Postives = 91/125 (72.80%), Query Frame = 1
Query:    1 MTASAFMAVGIGAALGAWLRWMLSTWFNPVAPTLPLGTLAANLVGGYLVGVAVAYFAANSSLAPEWRLLCITGFLGGLTTFSTFSAESVQMLMAAQYGSAVLHTSAHLAGSLAATFAGFWTYRTF 375
            M+   F+AVG+GAALGAWLRW L+   N V P LP GTLAANLVGGYL+GVAV +F  ++ L PEWRLL ITGFLGGLTTFSTFS E V  ++A  +   VLH  AHL GSL  T  GFWT RTF
Sbjct:    1 MSGMGFLAVGVGAALGAWLRWALAILLNAVNPALPYGTLAANLVGGYLIGVAVGFFDTHAGLPPEWRLLVITGFLGGLTTFSTFSGEVVANILAGDHVIGVLHIVAHLGGSLFLTMLGFWTVRTF 125          
BLAST of mRNA_P-wetherbeei_contig6839.3.1 vs. uniprot
Match: A0A0B1YM52_9RALS (Putative fluoride ion transporter CrcB n=2 Tax=unclassified Ralstonia TaxID=209769 RepID=A0A0B1YM52_9RALS)

HSP 1 Score: 160 bits (406), Expect = 1.140e-48
Identity = 79/125 (63.20%), Postives = 91/125 (72.80%), Query Frame = 1
Query:    1 MTASAFMAVGIGAALGAWLRWMLSTWFNPVAPTLPLGTLAANLVGGYLVGVAVAYFAANSSLAPEWRLLCITGFLGGLTTFSTFSAESVQMLMAAQYGSAVLHTSAHLAGSLAATFAGFWTYRTF 375
            M+   F+AVG+GAALGAWLRW  +  +N + P LP GTLAANLVGGYL+GVAV  F  ++ L PEWRLL ITGFLGGLTTFSTFS+E V  ++A  YG  VLH  AHL GSL  T  G WT RTF
Sbjct:    1 MSGMGFLAVGVGAALGAWLRWGFAVLWNAINPALPYGTLAANLVGGYLIGVAVGVFDTHTGLPPEWRLLVITGFLGGLTTFSTFSSEVVANILAGDYGVGVLHIVAHLGGSLFLTLLGLWTVRTF 125          
BLAST of mRNA_P-wetherbeei_contig6839.3.1 vs. uniprot
Match: UPI00164C7174 (fluoride efflux transporter CrcB n=1 Tax=Undibacterium hunanense TaxID=2762292 RepID=UPI00164C7174)

HSP 1 Score: 160 bits (406), Expect = 1.180e-48
Identity = 74/117 (63.25%), Postives = 91/117 (77.78%), Query Frame = 1
Query:   19 MAVGIGAALGAWLRWMLSTWFNPVAPTLPLGTLAANLVGGYLVGVAVAYFAANSSLAPEWRLLCITGFLGGLTTFSTFSAESVQMLMAAQYGSAVLHTSAHLAGSLAATFAGFWTYR 369
            +AVG+GAALGAWLRW+L  W N   P LPLGTL ANL GGY++G+ VA+F+AN  L+PEWRL  +TGFLGGLTTFSTFSAE++ +L    YG A++H+ AHL GS+   FAGF TYR
Sbjct:    7 LAVGLGAALGAWLRWVLGLWLNATYPLLPLGTLIANLGGGYIIGLCVAFFSANPQLSPEWRLFLVTGFLGGLTTFSTFSAEAMSLLHRGDYGWALMHSGAHLVGSILCCFAGFATYR 123          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6839.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019A2E0E72.650e-5465.08Fluoride efflux transporter CrcB n=1 Tax=Candidatu... [more]
A0A1Y0G8Q2_9PROT4.310e-5165.85Putative fluoride ion transporter CrcB n=1 Tax=Sul... [more]
A0A1F4CBF3_9PROT1.010e-4965.85Putative fluoride ion transporter CrcB n=2 Tax=unc... [more]
A0A258TQ62_9PROT1.920e-4965.00Putative fluoride ion transporter CrcB n=1 Tax=Hyd... [more]
A0A1F4AVQ8_9PROT2.040e-4966.67Putative fluoride ion transporter CrcB n=1 Tax=Bet... [more]
A0A0F0FMW0_9BURK8.030e-4962.81Putative fluoride ion transporter CrcB n=8 Tax=Bur... [more]
UPI001C0002AB8.030e-4962.70fluoride efflux transporter CrcB n=1 Tax=Cupriavid... [more]
CRCB_RALPJ1.140e-4864.00Putative fluoride ion transporter CrcB n=21 Tax=Pr... [more]
A0A0B1YM52_9RALS1.140e-4863.20Putative fluoride ion transporter CrcB n=2 Tax=unc... [more]
UPI00164C71741.180e-4863.25fluoride efflux transporter CrcB n=1 Tax=Undibacte... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6839contigP-wetherbeei_contig6839:2430..2810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog402626.Rpic_1208
Preferred namecrcB
PFAMsCRCB
Model size381
Max annot lvl28216|Betaproteobacteria
KEGG koko:K06199
KEGG TC1.A.43.1,1.A.43.2,1.A.43.3
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.87e-49
EggNOG OGsCOG0239@1|root,COG0239@2|Bacteria,1MZNH@1224|Proteobacteria,2VUBZ@28216|Betaproteobacteria,1K7YI@119060|Burkholderiaceae
DescriptionImportant for reducing fluoride concentration in the cell, thus reducing its toxicity
Cds size381
COG categoryD
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186941.037094-CDS-P-wetherbeei_contig6839:2429..28101683186941.037094-CDS-P-wetherbeei_contig6839:2429..2810Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6839 2430..2810 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6839.3.1prot_P-wetherbeei_contig6839.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6839 2430..2810 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6839.3.1

>prot_P-wetherbeei_contig6839.3.1 ID=prot_P-wetherbeei_contig6839.3.1|Name=mRNA_P-wetherbeei_contig6839.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=127bp
MTASAFMAVGIGAALGAWLRWMLSTWFNPVAPTLPLGTLAANLVGGYLVG
VAVAYFAANSSLAPEWRLLCITGFLGGLTTFSTFSAESVQMLMAAQYGSA
VLHTSAHLAGSLAATFAGFWTYRTFA*
back to top

mRNA from alignment at P-wetherbeei_contig6839:2430..2810+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6839.3.1 ID=mRNA_P-wetherbeei_contig6839.3.1|Name=mRNA_P-wetherbeei_contig6839.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig6839:2430..2810+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGCGAGCGCCTTCATGGCCGTAGGCATCGGCGCAGCGCTGGGCGC ATGGCTGCGGTGGATGCTGTCCACCTGGTTCAACCCGGTGGCTCCGACCC TGCCGCTCGGGACGCTGGCCGCCAACCTCGTCGGCGGCTACCTCGTGGGG GTTGCAGTGGCGTATTTCGCCGCAAACTCCAGCCTGGCCCCCGAGTGGCG GCTGCTGTGCATCACCGGCTTCCTCGGCGGGCTGACGACGTTTTCCACGT TCTCGGCCGAGTCCGTCCAGATGCTGATGGCCGCACAGTACGGGTCCGCA GTGCTGCACACCTCGGCCCATCTCGCCGGGTCGCTCGCGGCCACCTTTGC CGGGTTCTGGACCTACCGCACCTTTGCCTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6839:2430..2810+

>mRNA_P-wetherbeei_contig6839.3.1 ID=mRNA_P-wetherbeei_contig6839.3.1|Name=mRNA_P-wetherbeei_contig6839.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig6839:2430..2810+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGCGAGCGCCTTCATGGCCGTAGGCATCGGCGCAGCGCTGGGCGC
ATGGCTGCGGTGGATGCTGTCCACCTGGTTCAACCCGGTGGCTCCGACCC
TGCCGCTCGGGACGCTGGCCGCCAACCTCGTCGGCGGCTACCTCGTGGGG
GTTGCAGTGGCGTATTTCGCCGCAAACTCCAGCCTGGCCCCCGAGTGGCG
GCTGCTGTGCATCACCGGCTTCCTCGGCGGGCTGACGACGTTTTCCACGT
TCTCGGCCGAGTCCGTCCAGATGCTGATGGCCGCACAGTACGGGTCCGCA
GTGCTGCACACCTCGGCCCATCTCGCCGGGTCGCTCGCGGCCACCTTTGC
CGGGTTCTGGACCTACCGCACCTTTGCCTGA
back to top