mRNA_P-wetherbeei_contig6837.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6837.1.1
Unique NamemRNA_P-wetherbeei_contig6837.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6837.1.1 vs. uniprot
Match: A0A6N2MD82_SALVM (Integrase catalytic domain-containing protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2MD82_SALVM)

HSP 1 Score: 59.3 bits (142), Expect = 6.300e-7
Identity = 31/65 (47.69%), Postives = 41/65 (63.08%), Query Frame = -1
Query:   88 HMAAAKRCLRYIVGTRSLGIVYCRGAAGARPVLTGYSDANMAGNFDNGRSTTGDCHL---PAVRW 273
            HMAAAKR LRY++GT+ LG+ Y R A G    L  Y+D+N  G+ ++ RST+G   L    AV W
Sbjct: 1101 HMAAAKRVLRYVMGTKDLGVFYRRNAGGTENELEVYTDSNYTGDVEDRRSTSGYVFLLSGGAVAW 1165          
BLAST of mRNA_P-wetherbeei_contig6837.1.1 vs. uniprot
Match: Q8SAW7_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q8SAW7_ORYSJ)

HSP 1 Score: 58.5 bits (140), Expect = 1.150e-6
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = -1
Query:   64 HMAAAKRCLRYIVGTRSLGIVYCRGAAGARPVLTGYSDANMAGNFDNGRSTTGDCHLPAVRWGGIVFESA 273
            H+AA +R LRY+ GTR  GI +  GA  A P+L GYSD+++AG+ D  +ST+G      V  G I ++S+
Sbjct: 1091 HLAAVRRILRYVAGTRCWGIRFGPGARCALPMLVGYSDSDLAGDPDERKSTSGQIFF--VNGGPITWQSS 1158          
BLAST of mRNA_P-wetherbeei_contig6837.1.1 vs. uniprot
Match: A0A392NGD8_9FABA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392NGD8_9FABA)

HSP 1 Score: 57.4 bits (137), Expect = 1.780e-6
Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = -1
Query:  115 VHMAAAKRCLRYIVGTRSLGIVYCRGAAGARPVLTGYSDANMAGNFDNGRSTTG 276
            +H AAAKR LRY+ GT SLG++Y +G  GA   L G++D++ AG+ ++ RSTTG
Sbjct:  109 LHYAAAKRILRYLKGTMSLGLLYKKGVKGAVQSLQGWTDSDYAGDTNDRRSTTG 162          
BLAST of mRNA_P-wetherbeei_contig6837.1.1 vs. uniprot
Match: C7J163_ORYSJ (Os04g0196500 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=C7J163_ORYSJ)

HSP 1 Score: 57.8 bits (138), Expect = 2.010e-6
Identity = 29/70 (41.43%), Postives = 45/70 (64.29%), Query Frame = -1
Query:   64 HMAAAKRCLRYIVGTRSLGIVYCRGAAGARPVLTGYSDANMAGNFDNGRSTTGDCHLPAVRWGGIVFESA 273
            H+AA +R LRY+ GTR  GI +  GA  A P+L GYSD+++AG+ D  +ST+G      +  G + ++S+
Sbjct:  713 HLAAVRRILRYVAGTRCWGIRFGPGARCALPMLVGYSDSDLAGDPDERKSTSGQIFF--INGGPVTWQSS 780          
BLAST of mRNA_P-wetherbeei_contig6837.1.1 vs. uniprot
Match: Q2R2J6_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2R2J6_ORYSJ)

HSP 1 Score: 57.8 bits (138), Expect = 2.120e-6
Identity = 29/70 (41.43%), Postives = 45/70 (64.29%), Query Frame = -1
Query:   64 HMAAAKRCLRYIVGTRSLGIVYCRGAAGARPVLTGYSDANMAGNFDNGRSTTGDCHLPAVRWGGIVFESA 273
            H+AA +R LRY+ GTR  GI +  GA  A P+L GYSD+++AG+ D  +ST+G      +  G + ++S+
Sbjct: 1139 HLAAVRRILRYVAGTRCWGIRFGPGARCALPMLVGYSDSDLAGDPDERKSTSGQIFF--INGGPVTWQSS 1206          
BLAST of mRNA_P-wetherbeei_contig6837.1.1 vs. uniprot
Match: Q7XPB1_ORYSJ (OSJNBb0026E15.10 protein n=2 Tax=Oryza sativa TaxID=4530 RepID=Q7XPB1_ORYSJ)

HSP 1 Score: 57.8 bits (138), Expect = 2.120e-6
Identity = 29/70 (41.43%), Postives = 45/70 (64.29%), Query Frame = -1
Query:   64 HMAAAKRCLRYIVGTRSLGIVYCRGAAGARPVLTGYSDANMAGNFDNGRSTTGDCHLPAVRWGGIVFESA 273
            H+AA +R LRY+ GTR  GI +  GA  A P+L GYSD+++AG+ D  +ST+G      +  G + ++S+
Sbjct: 1257 HLAAVRRILRYVAGTRCWGIRFGPGARCALPMLVGYSDSDLAGDPDERKSTSGQIFF--INGGPVTWQSS 1324          
BLAST of mRNA_P-wetherbeei_contig6837.1.1 vs. uniprot
Match: A0A392P5W1_9FABA (Uncharacterized protein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392P5W1_9FABA)

HSP 1 Score: 53.5 bits (127), Expect = 2.620e-6
Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = -1
Query:   31 VHMAAAKRCLRYIVGTRSLGIVYCRGAAGARPVLTGYSDANMAGNFDNGRSTTG---DCHLPAVRWGGIVFESAPAFGGAFNDGG 276
            +H+AAAKR LRYI GT S GI+Y +G       L G++D++ AG+ D+ +ST G      L A+ W    F+  P  GG  +  G
Sbjct:    7 IHLAAAKRILRYIKGTISFGILYEKGELNQE--LKGWTDSDYAGDMDDRKSTLGYVFKLGLGAISWS---FKKQPIGGGMGSSTG 86          
BLAST of mRNA_P-wetherbeei_contig6837.1.1 vs. uniprot
Match: A0A5N5FPD5_9ROSA (Uncharacterized protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FPD5_9ROSA)

HSP 1 Score: 53.9 bits (128), Expect = 3.840e-6
Identity = 28/54 (51.85%), Postives = 39/54 (72.22%), Query Frame = -1
Query:  115 VHMAAAKRCLRYIVGTRSLGIVYCRGAAGARPVLTGYSDANMAGNFDNGRSTTG 276
            +H+AAAKR LRY+ GT SLGI+Y +G       L GYSD++ AG+ D+ +ST+G
Sbjct:   17 MHLAAAKRVLRYLKGTISLGILYRKGG---HVELRGYSDSDYAGDLDDRKSTSG 67          
BLAST of mRNA_P-wetherbeei_contig6837.1.1 vs. uniprot
Match: A0A2I0JKP1_PUNGR (Uncharacterized protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0JKP1_PUNGR)

HSP 1 Score: 53.5 bits (127), Expect = 9.650e-6
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = -1
Query:  109 AAAVHMAAAKRCLRYIVGTRSLGIVYCRGAAGARPVLTGYSDANMAGNFDNGRSTTGDC 285
            A+ +HM AAKR +RY+ GT+SLG+ +C      +  L GYSD++ AG+ D+ +ST+G C
Sbjct:   52 ASEIHMVAAKRVVRYLKGTQSLGVKFCESD---QFNLHGYSDSDWAGSMDDMKSTSGYC 107          
BLAST of mRNA_P-wetherbeei_contig6837.1.1 vs. uniprot
Match: A0A8J5Y0J0_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Y0J0_9ROSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.320e-5
Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = -1
Query:  109 VHMAAAKRCLRYIVGTRSLGIVYCRGAAGARPVLTGYSDANMAGNFDNGRSTTGDC 276
            VH+ A KR LRY+ GT S G+++CR     R  L GY+DAN   +FD+ RSTTG C
Sbjct: 1293 VHVVALKRILRYLRGTLSHGLMFCRSD---RLSLVGYADANWGHDFDDRRSTTGYC 1345          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6837.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6N2MD82_SALVM6.300e-747.69Integrase catalytic domain-containing protein n=1 ... [more]
Q8SAW7_ORYSJ1.150e-644.29Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A392NGD8_9FABA1.780e-651.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
C7J163_ORYSJ2.010e-641.43Os04g0196500 protein n=1 Tax=Oryza sativa subsp. j... [more]
Q2R2J6_ORYSJ2.120e-641.43Retrotransposon protein, putative, Ty1-copia subcl... [more]
Q7XPB1_ORYSJ2.120e-641.43OSJNBb0026E15.10 protein n=2 Tax=Oryza sativa TaxI... [more]
A0A392P5W1_9FABA2.620e-640.00Uncharacterized protein n=1 Tax=Trifolium medium T... [more]
A0A5N5FPD5_9ROSA3.840e-651.85Uncharacterized protein n=1 Tax=Pyrus ussuriensis ... [more]
A0A2I0JKP1_PUNGR9.650e-645.76Uncharacterized protein n=1 Tax=Punica granatum Ta... [more]
A0A8J5Y0J0_9ROSI1.320e-551.79Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6837contigP-wetherbeei_contig6837:988..1637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size572
Hectar predicted targeting categoryother localisation
Exons2
Cds size570
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186940.8835208-CDS-P-wetherbeei_contig6837:987..12771683186940.8835208-CDS-P-wetherbeei_contig6837:987..1277Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6837 988..1277 -
1683186940.8981855-CDS-P-wetherbeei_contig6837:1357..16371683186940.8981855-CDS-P-wetherbeei_contig6837:1357..1637Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6837 1358..1637 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6837.1.1prot_P-wetherbeei_contig6837.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6837 988..1637 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6837.1.1

>prot_P-wetherbeei_contig6837.1.1 ID=prot_P-wetherbeei_contig6837.1.1|Name=mRNA_P-wetherbeei_contig6837.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=190bp
PPQANSAIYSASIVERATERWSRLENDAAPPDSWKMTVTCGRTPVVEVAG
HVGVAVAGQHRPRSRRAAAVDDAEAASPDNVAQAALRRRHVHRRCQQSFD
EAPLPLGAIPRRSLQRPRPAPWSVPAHSGPPASSPALPPSAQRGFSSCAV
NCYSSGSTASSCSSAVARSIDRLHLFPETACTCSPRPPDQ
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mRNA from alignment at P-wetherbeei_contig6837:988..1637-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6837.1.1 ID=mRNA_P-wetherbeei_contig6837.1.1|Name=mRNA_P-wetherbeei_contig6837.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=650bp|location=Sequence derived from alignment at P-wetherbeei_contig6837:988..1637- (Phaeothamnion wetherbeei SAG_119_79)
CCCCCTCAAGCAAATAGCGCCATATACTCTGCCTCCATCGTTGAACGCGC CACCGAACGCTGGAGCCGACTCGAAAACGATGCCGCCCCACCTGACAGCT GGAAGATGACAGTCACCTGTGGTAGAACGCCCGTTGTCGAAGTTGCCGGC CATGTTGGCGTCGCTGTAGCCGGTCAGCACCGGCCGCGCTCCCGCCGCGC CGCGGCAGTAGACGATGCCGAGGCTGCGAGTCCCGACAATGTAGCGCAAG CAGCGCTTCGCCGCCGCCATGTGCACCGCCGTCGGCGCCAAGATATTGCG CGCCAGGATGCGAACGGCTTTGGCGATGACGGGGCACGTGACATGTGCCG CGTACATGAGGCTGCCAACAAAGTTTCGATGAAGCTCCACTGCCGCTGGG GGCAATACCGCGCCGCTCGCTTCAGCGGCCGCGGCCAGCGCCGTGGTCAG TGCCAGCTCATTCAGGTCCGCCAGCTTCTTCACCTGCACTCCCGCCATCA GCGCAACGAGGTTTTTCCTCTTGCGCTGTCAACTGCTACTCCTCCGGCTC CACCGCAAGCAGCTGCTCCAGTGCCGTCGCTCGGTCCATTGACCGCCTGC ACTTGTTCCCCGAGACGGCCTGCACTTGTTCCCCGAGACCGCCAGACCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6837:988..1637-

>mRNA_P-wetherbeei_contig6837.1.1 ID=mRNA_P-wetherbeei_contig6837.1.1|Name=mRNA_P-wetherbeei_contig6837.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=570bp|location=Sequence derived from alignment at P-wetherbeei_contig6837:988..1637- (Phaeothamnion wetherbeei SAG_119_79)
CCCCCTCAAGCAAATAGCGCCATATACTCTGCCTCCATCGTTGAACGCGC
CACCGAACGCTGGAGCCGACTCGAAAACGATGCCGCCCCACCTGACAGCT
GGAAGATGACAGTCACCTGTGGTAGAACGCCCGTTGTCGAAGTTGCCGGC
CATGTTGGCGTCGCTGTAGCCGGTCAGCACCGGCCGCGCTCCCGCCGCGC
CGCGGCAGTAGACGATGCCGAGGCTGCGAGTCCCGACAATGTAGCGCAAG
CAGCGCTTCGCCGCCGCCATGTGCACCGCCGCTGCCAACAAAGTTTCGAT
GAAGCTCCACTGCCGCTGGGGGCAATACCGCGCCGCTCGCTTCAGCGGCC
GCGGCCAGCGCCGTGGTCAGTGCCAGCTCATTCAGGTCCGCCAGCTTCTT
CACCTGCACTCCCGCCATCAGCGCAACGAGGTTTTTCCTCTTGCGCTGTC
AACTGCTACTCCTCCGGCTCCACCGCAAGCAGCTGCTCCAGTGCCGTCGC
TCGGTCCATTGACCGCCTGCACTTGTTCCCCGAGACGGCCTGCACTTGTT
CCCCGAGACCGCCAGACCAG
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