mRNA_P-wetherbeei_contig6831.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6831.4.1
Unique NamemRNA_P-wetherbeei_contig6831.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6831.4.1 vs. uniprot
Match: A0A3C0TWJ1_9PROT (ABC transporter ATP-binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TWJ1_9PROT)

HSP 1 Score: 424 bits (1091), Expect = 6.120e-149
Identity = 208/252 (82.54%), Postives = 232/252 (92.06%), Query Frame = 1
Query:    7 MSDTPSENLMAIEMTGVNKWFGAFQVLKQIDLSVKRGERIVICGPSGSGKSTLIRCINRLEEHQQGRIIVNGIELNHDLKRIDEVRAEVGMVFQSFNLFPHLTILENCTLAPIWVRKLPRAQAHDVAMNYLERVQIADQAHKFPGQLSGGQQQRVAIARALCMSPEIMLFDEPTSSLDPEMIKEVLDVMIGLAGDGMTMLCVTHEMGFARTVADRVIFMDAGQIVEENAPEEFFNHPQHPRTREFLSQILSH 762
            MS+  S + + IE++G+NKWFG F VL++IDL V+R ERIVICGPSGSGKSTLIRCINRLEEHQ GRIIVNG+ELN+DLK ID+VRAEVGMVFQSFNLFPHLTILENCTLAPIWVR+LPRA+A ++AM +LERV I  QAHKFPGQLSGGQQQRVAIARALCM+P IMLFDEPTSSLDPEMIKEVLDVMI LA +GMTM+CVTHEMGFARTVA+R++FMD GQIVEENAPEEFFN+PQHPRTREFLSQILSH
Sbjct:    1 MSEKDSADTV-IEISGLNKWFGDFHVLREIDLIVRRSERIVICGPSGSGKSTLIRCINRLEEHQSGRIIVNGVELNNDLKHIDQVRAEVGMVFQSFNLFPHLTILENCTLAPIWVRRLPRAEARELAMGFLERVHIGAQAHKFPGQLSGGQQQRVAIARALCMNPRIMLFDEPTSSLDPEMIKEVLDVMIDLAQEGMTMICVTHEMGFARTVANRIMFMDEGQIVEENAPEEFFNNPQHPRTREFLSQILSH 251          
BLAST of mRNA_P-wetherbeei_contig6831.4.1 vs. uniprot
Match: A0A351T1V9_9PROT (ABC transporter ATP-binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T1V9_9PROT)

HSP 1 Score: 414 bits (1065), Expect = 9.560e-145
Identity = 199/243 (81.89%), Postives = 227/243 (93.42%), Query Frame = 1
Query:   34 MAIEMTGVNKWFGAFQVLKQIDLSVKRGERIVICGPSGSGKSTLIRCINRLEEHQQGRIIVNGIELNHDLKRIDEVRAEVGMVFQSFNLFPHLTILENCTLAPIWVRKLPRAQAHDVAMNYLERVQIADQAHKFPGQLSGGQQQRVAIARALCMSPEIMLFDEPTSSLDPEMIKEVLDVMIGLAGDGMTMLCVTHEMGFARTVADRVIFMDAGQIVEENAPEEFFNHPQHPRTREFLSQILSH 762
            +AI++T ++KWFG F VL+ IDL+V RGERIV+CGPSGSGKSTLIRCINRLEEHQ+G+IIVNGIEL +DLK+IDEVR EVGM FQ FNLFPHLTILENCTLAP+WVRK+P+++AHDVAM++LERVQIADQAHKFPGQLSGGQQQRVAIAR+LCM+P+IMLFDEPTS+LDPEMIKEVLDVMI LA +GMTM+CVTHEMGFARTVA+RVIFMD GQIVE+N PE FF+ PQH RTREFLSQILSH
Sbjct:   24 VAIQITDMHKWFGEFHVLRAIDLTVFRGERIVVCGPSGSGKSTLIRCINRLEEHQRGQIIVNGIELTNDLKKIDEVRREVGMCFQHFNLFPHLTILENCTLAPVWVRKMPKSEAHDVAMHFLERVQIADQAHKFPGQLSGGQQQRVAIARSLCMNPQIMLFDEPTSALDPEMIKEVLDVMIDLAQEGMTMICVTHEMGFARTVANRVIFMDEGQIVEQNEPEPFFSDPQHARTREFLSQILSH 266          
BLAST of mRNA_P-wetherbeei_contig6831.4.1 vs. uniprot
Match: A0A7W6HA41_9HYPH (General L-amino acid transport system ATP-binding protein n=12 Tax=Aurantimonadaceae TaxID=255475 RepID=A0A7W6HA41_9HYPH)

HSP 1 Score: 408 bits (1049), Expect = 2.190e-142
Identity = 199/252 (78.97%), Postives = 229/252 (90.87%), Query Frame = 1
Query:    1 ARMSDTPSENLMAIEMTGVNKWFGAFQVLKQIDLSVKRGERIVICGPSGSGKSTLIRCINRLEEHQQGRIIVNGIELNHDLKRIDEVRAEVGMVFQSFNLFPHLTILENCTLAPIWVRKLPRAQAHDVAMNYLERVQIADQAHKFPGQLSGGQQQRVAIARALCMSPEIMLFDEPTSSLDPEMIKEVLDVMIGLAGDGMTMLCVTHEMGFARTVADRVIFMDAGQIVEENAPEEFFNHPQHPRTREFLSQIL 756
            AR+S   SE + A+E+ GVNKWFG F VL+ I+L+V+RGERIVICGPSGSGKST+IRCINRLEEHQ+GRI+V+GIEL +DLK+IDEVR EVGMVFQ FNLFPHLTILENCTLAPIWVRK+P+ QA +VAM+YL RV+I +QAHK+PGQLSGGQQQRVAIAR+LCMSP+IMLFDEPTS+LDPEMIKEVLDVM+GLA +GMTMLCVTHEMGFAR VA+RVIFMDAGQIVEEN PE FF +P+H RT+ FLSQIL
Sbjct:   10 ARLSGNISEEI-AVELLGVNKWFGEFHVLRDINLTVRRGERIVICGPSGSGKSTMIRCINRLEEHQKGRIVVDGIELTNDLKKIDEVRREVGMVFQHFNLFPHLTILENCTLAPIWVRKMPKKQAEEVAMHYLTRVKIPEQAHKYPGQLSGGQQQRVAIARSLCMSPKIMLFDEPTSALDPEMIKEVLDVMVGLAEEGMTMLCVTHEMGFARQVANRVIFMDAGQIVEENEPEPFFTNPEHERTKLFLSQIL 260          
BLAST of mRNA_P-wetherbeei_contig6831.4.1 vs. uniprot
Match: A0A4R3JE87_9PROT (General L-amino acid transport system ATP-binding protein n=1 Tax=Varunaivibrio sulfuroxidans TaxID=1773489 RepID=A0A4R3JE87_9PROT)

HSP 1 Score: 402 bits (1032), Expect = 7.900e-140
Identity = 193/254 (75.98%), Postives = 227/254 (89.37%), Query Frame = 1
Query:    1 ARMSDTPSENLMAIEMTGVNKWFGAFQVLKQIDLSVKRGERIVICGPSGSGKSTLIRCINRLEEHQQGRIIVNGIELNHDLKRIDEVRAEVGMVFQSFNLFPHLTILENCTLAPIWVRKLPRAQAHDVAMNYLERVQIADQAHKFPGQLSGGQQQRVAIARALCMSPEIMLFDEPTSSLDPEMIKEVLDVMIGLAGDGMTMLCVTHEMGFARTVADRVIFMDAGQIVEENAPEEFFNHPQHPRTREFLSQILSH 762
            ++ S + +++ +AIE+  ++KW+G F VLK I+LSV+ GERIVICGPSGSGKST+IRCINRLEEHQQG IIV GIEL  DLK+IDE+R EVGM FQ FNLFPHLT+L+NC+LAPIWVRK+P+A+A +VAM YLERV+I DQAHKFPGQLSGGQQQRVAIAR+LCMSP++MLFDEPTS+LDPEMIKEVLDVMI LA +GMTMLCVTHEMGFA+TVADRVIFMD GQIVEEN P EFFN+PQ+ RT+ FLSQIL+H
Sbjct:    6 SKASPSTADDKLAIEIKAMHKWYGQFHVLKDINLSVRHGERIVICGPSGSGKSTMIRCINRLEEHQQGHIIVGGIELTDDLKKIDEIRREVGMCFQHFNLFPHLTVLQNCSLAPIWVRKMPKAKAEEVAMKYLERVKIPDQAHKFPGQLSGGQQQRVAIARSLCMSPKVMLFDEPTSALDPEMIKEVLDVMIELAEEGMTMLCVTHEMGFAKTVADRVIFMDEGQIVEENEPGEFFNNPQNDRTKLFLSQILNH 259          
BLAST of mRNA_P-wetherbeei_contig6831.4.1 vs. uniprot
Match: A0A327JKT2_9HYPH (ABC transporter ATP-binding protein n=2 Tax=Rhodobium orientis TaxID=34017 RepID=A0A327JKT2_9HYPH)

HSP 1 Score: 401 bits (1030), Expect = 1.900e-139
Identity = 193/241 (80.08%), Postives = 220/241 (91.29%), Query Frame = 1
Query:   34 MAIEMTGVNKWFGAFQVLKQIDLSVKRGERIVICGPSGSGKSTLIRCINRLEEHQQGRIIVNGIELNHDLKRIDEVRAEVGMVFQSFNLFPHLTILENCTLAPIWVRKLPRAQAHDVAMNYLERVQIADQAHKFPGQLSGGQQQRVAIARALCMSPEIMLFDEPTSSLDPEMIKEVLDVMIGLAGDGMTMLCVTHEMGFARTVADRVIFMDAGQIVEENAPEEFFNHPQHPRTREFLSQIL 756
            +AIEM GVNKW+G F VLK IDL+VKRGERIVICGPSGSGKST+IRCINRLEEHQ+G I+V+GIEL  DLKRIDE+R EVGMVFQ FNLFPHLTILENCTLAPIWVRK+P+ +A D+AM+YLERV+I +QA K+PGQLSGGQQQRVAIAR+LCM+P IMLFDEPTS+LDPEMIKEVLDVM+GLA +GMTMLCVTHEMGFAR VA+RVIFMD GQI+E+N PE FF++PQH RT+ FLSQIL
Sbjct:   23 IAIEMVGVNKWYGDFHVLKDIDLTVKRGERIVICGPSGSGKSTMIRCINRLEEHQRGNIVVDGIELTDDLKRIDEIRREVGMVFQHFNLFPHLTILENCTLAPIWVRKMPKKEAEDIAMHYLERVKIPEQALKYPGQLSGGQQQRVAIARSLCMNPRIMLFDEPTSALDPEMIKEVLDVMVGLAEEGMTMLCVTHEMGFARQVANRVIFMDYGQIIEQNEPELFFDNPQHDRTKLFLSQIL 263          
BLAST of mRNA_P-wetherbeei_contig6831.4.1 vs. uniprot
Match: A0A2A5GE13_9HYPH (ABC transporter ATP-binding protein n=2 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2A5GE13_9HYPH)

HSP 1 Score: 400 bits (1029), Expect = 2.520e-139
Identity = 197/251 (78.49%), Postives = 223/251 (88.84%), Query Frame = 1
Query:    4 RMSDTPSENLMAIEMTGVNKWFGAFQVLKQIDLSVKRGERIVICGPSGSGKSTLIRCINRLEEHQQGRIIVNGIELNHDLKRIDEVRAEVGMVFQSFNLFPHLTILENCTLAPIWVRKLPRAQAHDVAMNYLERVQIADQAHKFPGQLSGGQQQRVAIARALCMSPEIMLFDEPTSSLDPEMIKEVLDVMIGLAGDGMTMLCVTHEMGFARTVADRVIFMDAGQIVEENAPEEFFNHPQHPRTREFLSQIL 756
            R   T S+  +AI++T +NKW+G F VLK I+L V RGERIVI GPSGSGKSTLIRCINRLEEHQ+G+IIV+GIELN+DLK+IDEVR EVGMVFQ FNLFPHLTILENCTLAPIWVRK+P+ QA +VAM YLERV+I +QAHKFPGQLSGGQQQRVAIAR+LCM+P IMLFDEPTS+LDPEMIKEVLD M+ LA +GMTML VTHEMGFAR VA+RVIFMDAGQIVEEN P EFF++PQH RT+EFLSQIL
Sbjct:   11 RSKMTVSDTDVAIDITNMNKWYGDFHVLKDINLKVMRGERIVIAGPSGSGKSTLIRCINRLEEHQRGQIIVDGIELNNDLKKIDEVRREVGMVFQHFNLFPHLTILENCTLAPIWVRKMPKKQAEEVAMQYLERVKIPEQAHKFPGQLSGGQQQRVAIARSLCMNPRIMLFDEPTSALDPEMIKEVLDTMVSLAEEGMTMLVVTHEMGFARQVANRVIFMDAGQIVEENVPSEFFDNPQHERTKEFLSQIL 261          
BLAST of mRNA_P-wetherbeei_contig6831.4.1 vs. uniprot
Match: A0A7X3LSH3_9HYPH (ATP-binding cassette domain-containing protein n=12 Tax=Stappiaceae TaxID=2821832 RepID=A0A7X3LSH3_9HYPH)

HSP 1 Score: 400 bits (1028), Expect = 4.420e-139
Identity = 193/243 (79.42%), Postives = 220/243 (90.53%), Query Frame = 1
Query:   34 MAIEMTGVNKWFGAFQVLKQIDLSVKRGERIVICGPSGSGKSTLIRCINRLEEHQQGRIIVNGIELNHDLKRIDEVRAEVGMVFQSFNLFPHLTILENCTLAPIWVRKLPRAQAHDVAMNYLERVQIADQAHKFPGQLSGGQQQRVAIARALCMSPEIMLFDEPTSSLDPEMIKEVLDVMIGLAGDGMTMLCVTHEMGFARTVADRVIFMDAGQIVEENAPEEFFNHPQHPRTREFLSQILSH 762
            +AIE+T +NKW+G F VLK IDL V RGERIVICGPSGSGKST+IRCINRLEEHQQG I+V+GIEL  DLK+IDE+R EVGMVFQ FNLFPHLTILENCTLAPIWVRK+PR +A D+AM+YLERV+I +QA K+PGQLSGGQQQRVAIAR+LCM+P+IMLFDEPTS+LDPEMIKEVLDVM+GLA +GMTMLCVTHEMGFAR VA+RVIFMD GQIVE+N PE FF++PQH RT+ FLSQIL H
Sbjct:   26 VAIEITKMNKWYGDFHVLKDIDLRVMRGERIVICGPSGSGKSTMIRCINRLEEHQQGSIVVDGIELTDDLKKIDEIRREVGMVFQHFNLFPHLTILENCTLAPIWVRKMPRKEAEDIAMHYLERVKIPEQAKKYPGQLSGGQQQRVAIARSLCMNPKIMLFDEPTSALDPEMIKEVLDVMVGLAEEGMTMLCVTHEMGFARQVANRVIFMDQGQIVEQNEPEPFFSNPQHERTKLFLSQILHH 268          
BLAST of mRNA_P-wetherbeei_contig6831.4.1 vs. uniprot
Match: G8PKP7_PSEUV (Glutamate/glutamine/aspartate/asparagine transport ATP-binding protein BztD n=39 Tax=Stappiaceae TaxID=2821832 RepID=G8PKP7_PSEUV)

HSP 1 Score: 399 bits (1026), Expect = 8.300e-139
Identity = 191/247 (77.33%), Postives = 224/247 (90.69%), Query Frame = 1
Query:   22 SENLMAIEMTGVNKWFGAFQVLKQIDLSVKRGERIVICGPSGSGKSTLIRCINRLEEHQQGRIIVNGIELNHDLKRIDEVRAEVGMVFQSFNLFPHLTILENCTLAPIWVRKLPRAQAHDVAMNYLERVQIADQAHKFPGQLSGGQQQRVAIARALCMSPEIMLFDEPTSSLDPEMIKEVLDVMIGLAGDGMTMLCVTHEMGFARTVADRVIFMDAGQIVEENAPEEFFNHPQHPRTREFLSQILSH 762
            S+  +AIE+TG+NKW+G F VL+ I+L V RGERIVICGPSGSGKST+IRCINRLEEHQ+GRI+V+GIEL  DLK+IDE+R EVGM FQ FNLFPHLTILENCTLAPIWVRK+P+ QA ++AM+YLERV+I +QA+K+PGQLSGGQQQRVAIAR+LCM+P++MLFDEPTS+LDPEMIKEVLDVMIGLA +GMTMLCVTHEMGFAR VA+RVIFMD GQIVE+N PE FF +PQH RT+ FLSQIL+H
Sbjct:   20 SDTDVAIEITGMNKWYGDFHVLRDINLKVMRGERIVICGPSGSGKSTMIRCINRLEEHQKGRIVVDGIELTSDLKKIDEIRREVGMCFQHFNLFPHLTILENCTLAPIWVRKMPKKQAEEIAMHYLERVKIPEQANKYPGQLSGGQQQRVAIARSLCMNPKVMLFDEPTSALDPEMIKEVLDVMIGLAEEGMTMLCVTHEMGFARKVANRVIFMDQGQIVEQNEPEPFFTNPQHERTQLFLSQILNH 266          
BLAST of mRNA_P-wetherbeei_contig6831.4.1 vs. uniprot
Match: A0A1U7JFT3_9HYPH (ABC transporter ATP-binding protein n=6 Tax=Hyphomicrobiales TaxID=356 RepID=A0A1U7JFT3_9HYPH)

HSP 1 Score: 399 bits (1025), Expect = 1.140e-138
Identity = 191/247 (77.33%), Postives = 223/247 (90.28%), Query Frame = 1
Query:   22 SENLMAIEMTGVNKWFGAFQVLKQIDLSVKRGERIVICGPSGSGKSTLIRCINRLEEHQQGRIIVNGIELNHDLKRIDEVRAEVGMVFQSFNLFPHLTILENCTLAPIWVRKLPRAQAHDVAMNYLERVQIADQAHKFPGQLSGGQQQRVAIARALCMSPEIMLFDEPTSSLDPEMIKEVLDVMIGLAGDGMTMLCVTHEMGFARTVADRVIFMDAGQIVEENAPEEFFNHPQHPRTREFLSQILSH 762
            S+  +AI++ G+NKWFG F VL+ I+L V +GERIV+CGPSGSGKST+IRCINRLEEHQ+G+IIV+GIEL +DLKRIDE+R EVGM FQ FNLFPHLTILENCTLAPIWVRK+P+ QA +VAM+YLERV+I +QAHK+PGQLSGGQQQRVAIAR+LCM+P+IMLFDEPTS+LDPEMIKEVLDVM+GLA +GMTMLCVTHEMGFAR VA+RVIFMD GQIVE+N PE FF +PQH RT+ FLSQIL H
Sbjct:   19 SDTEVAIDIIGMNKWFGDFHVLRDINLRVMKGERIVVCGPSGSGKSTMIRCINRLEEHQKGKIIVDGIELTNDLKRIDEIRREVGMCFQHFNLFPHLTILENCTLAPIWVRKMPKKQAEEVAMHYLERVKIPEQAHKYPGQLSGGQQQRVAIARSLCMNPKIMLFDEPTSALDPEMIKEVLDVMVGLAEEGMTMLCVTHEMGFARKVANRVIFMDQGQIVEQNEPEAFFTNPQHERTQLFLSQILHH 265          
BLAST of mRNA_P-wetherbeei_contig6831.4.1 vs. uniprot
Match: A0A6A7Y0L3_9HYPH (Amino acid ABC transporter ATP-binding protein n=1 Tax=Segnochrobactrum spirostomi TaxID=2608987 RepID=A0A6A7Y0L3_9HYPH)

HSP 1 Score: 399 bits (1024), Expect = 1.350e-138
Identity = 191/241 (79.25%), Postives = 219/241 (90.87%), Query Frame = 1
Query:   34 MAIEMTGVNKWFGAFQVLKQIDLSVKRGERIVICGPSGSGKSTLIRCINRLEEHQQGRIIVNGIELNHDLKRIDEVRAEVGMVFQSFNLFPHLTILENCTLAPIWVRKLPRAQAHDVAMNYLERVQIADQAHKFPGQLSGGQQQRVAIARALCMSPEIMLFDEPTSSLDPEMIKEVLDVMIGLAGDGMTMLCVTHEMGFARTVADRVIFMDAGQIVEENAPEEFFNHPQHPRTREFLSQIL 756
            +A+E+TGVNKW+G F VLK I+LSV RGERIVICGPSGSGKST+IRCINRLEEHQ+GRIIV+ IEL +DLKRI+EVR EVGMVFQ FNLFPHLTILENCTLAPIWVRK+P+ +A D+AM++L RV+I DQA K+PGQLSGGQQQRVAIARALCM P++MLFDEPTS+LDPEM+KEVLD M+GLA DGMTMLCVTHEMGFAR VA+RVIFMDAGQIVE+N P+ FF +PQH RT+ FLSQIL
Sbjct:   19 LAVELTGVNKWYGEFHVLKDINLSVTRGERIVICGPSGSGKSTMIRCINRLEEHQKGRIIVDNIELTNDLKRIEEVRREVGMVFQHFNLFPHLTILENCTLAPIWVRKMPKKEAEDLAMHFLTRVKIPDQARKYPGQLSGGQQQRVAIARALCMRPKVMLFDEPTSALDPEMVKEVLDTMVGLAQDGMTMLCVTHEMGFARQVANRVIFMDAGQIVEQNEPDAFFRNPQHERTKLFLSQIL 259          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6831.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TWJ1_9PROT6.120e-14982.54ABC transporter ATP-binding protein n=1 Tax=Alphap... [more]
A0A351T1V9_9PROT9.560e-14581.89ABC transporter ATP-binding protein n=1 Tax=Alphap... [more]
A0A7W6HA41_9HYPH2.190e-14278.97General L-amino acid transport system ATP-binding ... [more]
A0A4R3JE87_9PROT7.900e-14075.98General L-amino acid transport system ATP-binding ... [more]
A0A327JKT2_9HYPH1.900e-13980.08ABC transporter ATP-binding protein n=2 Tax=Rhodob... [more]
A0A2A5GE13_9HYPH2.520e-13978.49ABC transporter ATP-binding protein n=2 Tax=Hyphom... [more]
A0A7X3LSH3_9HYPH4.420e-13979.42ATP-binding cassette domain-containing protein n=1... [more]
G8PKP7_PSEUV8.300e-13977.33Glutamate/glutamine/aspartate/asparagine transport... [more]
A0A1U7JFT3_9HYPH1.140e-13877.33ABC transporter ATP-binding protein n=6 Tax=Hyphom... [more]
A0A6A7Y0L3_9HYPH1.350e-13879.25Amino acid ABC transporter ATP-binding protein n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6831contigP-wetherbeei_contig6831:2487..3251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog991905.SL003B_2008
Preferred nameglnQ
PFAMsABC_tran
Model size765
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02028,ko:K09972
KEGG TC3.A.1.3,3.A.1.3.17,3.A.1.3.18,3.A.1.3.7,3.A.1.3.8
KEGG Pathwayko02010,map02010
KEGG ModuleM00232,M00236
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.46e-140
EggNOG OGsCOG1126@1|root,COG1126@2|Bacteria,1MU9Q@1224|Proteobacteria,2TQX2@28211|Alphaproteobacteria,4BPA2@82117|unclassified Alphaproteobacteria
EC3.6.3.21
DescriptionABC transporter
Cds size759
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186940.5863028-CDS-P-wetherbeei_contig6831:2486..32451683186940.5863028-CDS-P-wetherbeei_contig6831:2486..3245Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6831 2487..3245 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186940.600825-UTR-P-wetherbeei_contig6831:3245..32511683186940.600825-UTR-P-wetherbeei_contig6831:3245..3251Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6831 3246..3251 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6831.4.1prot_P-wetherbeei_contig6831.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6831 2487..3245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6831.4.1

>prot_P-wetherbeei_contig6831.4.1 ID=prot_P-wetherbeei_contig6831.4.1|Name=mRNA_P-wetherbeei_contig6831.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=253bp
MSDTPSENLMAIEMTGVNKWFGAFQVLKQIDLSVKRGERIVICGPSGSGK
STLIRCINRLEEHQQGRIIVNGIELNHDLKRIDEVRAEVGMVFQSFNLFP
HLTILENCTLAPIWVRKLPRAQAHDVAMNYLERVQIADQAHKFPGQLSGG
QQQRVAIARALCMSPEIMLFDEPTSSLDPEMIKEVLDVMIGLAGDGMTML
CVTHEMGFARTVADRVIFMDAGQIVEENAPEEFFNHPQHPRTREFLSQIL
SH*
back to top

mRNA from alignment at P-wetherbeei_contig6831:2487..3251-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6831.4.1 ID=mRNA_P-wetherbeei_contig6831.4.1|Name=mRNA_P-wetherbeei_contig6831.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=765bp|location=Sequence derived from alignment at P-wetherbeei_contig6831:2487..3251- (Phaeothamnion wetherbeei SAG_119_79)
GCGCGCATGAGCGACACCCCCTCCGAAAATCTCATGGCGATAGAAATGAC CGGCGTCAATAAATGGTTCGGCGCATTTCAGGTTCTGAAACAGATTGATC TGTCGGTCAAACGTGGCGAACGCATTGTGATTTGCGGGCCATCCGGTTCC GGAAAATCCACACTGATCCGTTGCATCAACCGGCTGGAGGAACATCAGCA GGGCAGGATCATTGTCAATGGTATCGAGTTGAACCATGATCTCAAGCGCA TCGATGAAGTGCGCGCCGAGGTTGGCATGGTGTTTCAGTCGTTCAATCTG TTTCCGCATCTGACCATTCTGGAAAATTGCACGCTGGCCCCGATCTGGGT GCGTAAACTTCCCAGGGCGCAGGCCCATGACGTAGCAATGAATTATCTGG AGCGGGTGCAGATCGCCGATCAGGCGCATAAATTTCCAGGGCAACTATCG GGCGGTCAGCAACAGCGGGTGGCGATTGCGCGCGCGCTGTGCATGAGCCC GGAAATCATGCTGTTTGACGAGCCGACATCTTCACTGGATCCGGAAATGA TCAAGGAGGTGCTCGACGTGATGATCGGCCTGGCGGGCGATGGCATGACG ATGCTGTGCGTCACCCATGAAATGGGATTTGCGCGTACCGTTGCCGATAG GGTGATATTCATGGACGCCGGGCAGATTGTTGAAGAAAATGCGCCGGAAG AATTTTTCAATCATCCGCAACATCCGCGTACCCGCGAATTTTTAAGCCAG ATATTGAGTCATTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6831:2487..3251-

>mRNA_P-wetherbeei_contig6831.4.1 ID=mRNA_P-wetherbeei_contig6831.4.1|Name=mRNA_P-wetherbeei_contig6831.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=759bp|location=Sequence derived from alignment at P-wetherbeei_contig6831:2487..3251- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGACACCCCCTCCGAAAATCTCATGGCGATAGAAATGACCGGCGT
CAATAAATGGTTCGGCGCATTTCAGGTTCTGAAACAGATTGATCTGTCGG
TCAAACGTGGCGAACGCATTGTGATTTGCGGGCCATCCGGTTCCGGAAAA
TCCACACTGATCCGTTGCATCAACCGGCTGGAGGAACATCAGCAGGGCAG
GATCATTGTCAATGGTATCGAGTTGAACCATGATCTCAAGCGCATCGATG
AAGTGCGCGCCGAGGTTGGCATGGTGTTTCAGTCGTTCAATCTGTTTCCG
CATCTGACCATTCTGGAAAATTGCACGCTGGCCCCGATCTGGGTGCGTAA
ACTTCCCAGGGCGCAGGCCCATGACGTAGCAATGAATTATCTGGAGCGGG
TGCAGATCGCCGATCAGGCGCATAAATTTCCAGGGCAACTATCGGGCGGT
CAGCAACAGCGGGTGGCGATTGCGCGCGCGCTGTGCATGAGCCCGGAAAT
CATGCTGTTTGACGAGCCGACATCTTCACTGGATCCGGAAATGATCAAGG
AGGTGCTCGACGTGATGATCGGCCTGGCGGGCGATGGCATGACGATGCTG
TGCGTCACCCATGAAATGGGATTTGCGCGTACCGTTGCCGATAGGGTGAT
ATTCATGGACGCCGGGCAGATTGTTGAAGAAAATGCGCCGGAAGAATTTT
TCAATCATCCGCAACATCCGCGTACCCGCGAATTTTTAAGCCAGATATTG
AGTCATTGA
back to top