mRNA_P-wetherbeei_contig683.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig683.3.1
Unique NamemRNA_P-wetherbeei_contig683.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig683.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig683contigP-wetherbeei_contig683:6525..7948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1282
Hectar predicted targeting categoryother localisation
Exons2
Cds size1026
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186940.3469796-UTR-P-wetherbeei_contig683:6524..66571683186940.3469796-UTR-P-wetherbeei_contig683:6524..6657Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig683 6525..6657 +
1683186940.3798454-UTR-P-wetherbeei_contig683:7825..79481683186940.3798454-UTR-P-wetherbeei_contig683:7825..7948Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig683 7826..7948 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186940.3592908-CDS-P-wetherbeei_contig683:6657..71101683186940.3592908-CDS-P-wetherbeei_contig683:6657..7110Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig683 6658..7110 +
1683186940.3702836-CDS-P-wetherbeei_contig683:7252..78251683186940.3702836-CDS-P-wetherbeei_contig683:7252..7825Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig683 7253..7825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig683.3.1prot_P-wetherbeei_contig683.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig683 6658..7825 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig683.3.1

>prot_P-wetherbeei_contig683.3.1 ID=prot_P-wetherbeei_contig683.3.1|Name=mRNA_P-wetherbeei_contig683.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=342bp
MSPRDAAAFASLDEEVLYAVSAGRRWGLSGVDDALLVTHPTPWSEISRQF
MVKQDLSAGGGSGGGGGGSMPSTPLPRQGSGEQDWEEAERQETRGDVAIR
RSSSVAYSEIVAPSFRLLPLPGSGSDGESGYDGESSGEEDISDEAYLSRH
AEHLNSMREKLEAARKAREALASPRPLPKASKKSLKSSSWDQKGHQPLPS
PPTPLEHQHSAASNGWAFAIAAAGNNGHAAEEGFLASPGFAIPLPSPAPP
PDGLHAGKSSDGAAAGLPGATAMVVLPTGAAGLPGGPEANASGAITTTKR
PIGRPPRKNSLAPLEVGTMVMPSGSNGEGRAKRAAAGEGNG*
back to top

mRNA from alignment at P-wetherbeei_contig683:6525..7948+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig683.3.1 ID=mRNA_P-wetherbeei_contig683.3.1|Name=mRNA_P-wetherbeei_contig683.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1424bp|location=Sequence derived from alignment at P-wetherbeei_contig683:6525..7948+ (Phaeothamnion wetherbeei SAG_119_79)
CGCCGTGCCTCCGCTGGACCTCCGGCCGTGGGCGCTGCGCGGGCTCGGCG
CCGCCAACGTACGGAAGCGGAGCCGCGGCGGCTCGGTGGCCAGCTTGGCA
GGCTGCGGTGGCGACGGCAAGGACCCTCCCCGGATGAGCCCCCGCGATGC
TGCGGCATTCGCCTCGTTGGACGAGGAAGTCCTGTACGCAGTGTCGGCAG
GGCGCCGCTGGGGGCTGTCCGGCGTGGATGATGCGCTGCTGGTGACGCAC
CCGACGCCGTGGTCGGAAATTTCGCGGCAGTTTATGGTAAAGCAGGACCT
GTCGGCGGGCGGCGGTAGTGGTGGCGGTGGCGGTGGCAGCATGCCGTCGA
CGCCGCTGCCGCGGCAGGGCTCGGGCGAGCAGGACTGGGAGGAGGCAGAG
CGTCAGGAGACGCGCGGCGACGTTGCAATTCGGCGCTCCAGTTCGGTTGC
ATACTCGGAGATCGTCGCGCCGTCGTTCCGGCTGTTGCCGCTGCCCGGCA
GCGGCAGCGACGGCGAAAGCGGGTACGACGGCGAGAGCAGCGGCGAGGAG
GACATCTCGGACGAGGCCTACCTGTCCCGGCATGCGGTTAGTGGGATTTA
TCGGTCGCATCATGTTGTATGGTCTGTGCGGAAGAGTTTGAGGGTGCTCA
GGGTCTGAGAAGGTTCTCCCGTTTTTCCAACCTCCCTTCCGGATGCATTC
CTGCCGTTCTGCTGTCCCTTCCCGACAGGAGCACCTCAATTCCATGCGGG
AGAAGTTGGAGGCCGCCCGGAAGGCCCGCGAGGCGCTCGCGAGCCCGCGG
CCACTGCCAAAAGCGAGCAAGAAGTCCTTGAAGTCGTCTTCGTGGGACCA
GAAGGGGCACCAGCCGCTGCCCTCACCGCCAACGCCGCTGGAACACCAGC
ACTCTGCGGCGAGCAATGGCTGGGCTTTCGCTATCGCGGCGGCCGGAAAC
AACGGGCACGCGGCGGAGGAAGGCTTCCTTGCGTCGCCGGGGTTTGCCAT
TCCGCTGCCGTCGCCCGCTCCGCCGCCGGACGGTTTACATGCCGGGAAAA
GCAGCGACGGCGCCGCAGCCGGCCTTCCTGGTGCGACTGCCATGGTCGTC
CTCCCAACTGGTGCAGCCGGCCTTCCTGGCGGGCCTGAGGCGAACGCTTC
GGGCGCGATCACTACCACCAAGCGGCCTATCGGGAGGCCCCCCAGAAAGA
ACAGTCTTGCTCCACTGGAGGTGGGCACGATGGTAATGCCTTCCGGCAGC
AATGGGGAGGGTCGCGCCAAACGAGCGGCAGCAGGAGAGGGAAATGGATA
GTGTTGCCCTCTTGCGATGTCCTACGAGTGGAAGAAGCAGTTGGCGCTAT
GTTGGCACGAGAAATAGAGGCAGGCAGTGAGGCCGACACACGCAATGTTG
CCTAGAAGATGACTGATTTTCGAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig683:6525..7948+

>mRNA_P-wetherbeei_contig683.3.1 ID=mRNA_P-wetherbeei_contig683.3.1|Name=mRNA_P-wetherbeei_contig683.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1026bp|location=Sequence derived from alignment at P-wetherbeei_contig683:6525..7948+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCCCCCGCGATGCTGCGGCATTCGCCTCGTTGGACGAGGAAGTCCT
GTACGCAGTGTCGGCAGGGCGCCGCTGGGGGCTGTCCGGCGTGGATGATG
CGCTGCTGGTGACGCACCCGACGCCGTGGTCGGAAATTTCGCGGCAGTTT
ATGGTAAAGCAGGACCTGTCGGCGGGCGGCGGTAGTGGTGGCGGTGGCGG
TGGCAGCATGCCGTCGACGCCGCTGCCGCGGCAGGGCTCGGGCGAGCAGG
ACTGGGAGGAGGCAGAGCGTCAGGAGACGCGCGGCGACGTTGCAATTCGG
CGCTCCAGTTCGGTTGCATACTCGGAGATCGTCGCGCCGTCGTTCCGGCT
GTTGCCGCTGCCCGGCAGCGGCAGCGACGGCGAAAGCGGGTACGACGGCG
AGAGCAGCGGCGAGGAGGACATCTCGGACGAGGCCTACCTGTCCCGGCAT
GCGGAGCACCTCAATTCCATGCGGGAGAAGTTGGAGGCCGCCCGGAAGGC
CCGCGAGGCGCTCGCGAGCCCGCGGCCACTGCCAAAAGCGAGCAAGAAGT
CCTTGAAGTCGTCTTCGTGGGACCAGAAGGGGCACCAGCCGCTGCCCTCA
CCGCCAACGCCGCTGGAACACCAGCACTCTGCGGCGAGCAATGGCTGGGC
TTTCGCTATCGCGGCGGCCGGAAACAACGGGCACGCGGCGGAGGAAGGCT
TCCTTGCGTCGCCGGGGTTTGCCATTCCGCTGCCGTCGCCCGCTCCGCCG
CCGGACGGTTTACATGCCGGGAAAAGCAGCGACGGCGCCGCAGCCGGCCT
TCCTGGTGCGACTGCCATGGTCGTCCTCCCAACTGGTGCAGCCGGCCTTC
CTGGCGGGCCTGAGGCGAACGCTTCGGGCGCGATCACTACCACCAAGCGG
CCTATCGGGAGGCCCCCCAGAAAGAACAGTCTTGCTCCACTGGAGGTGGG
CACGATGGTAATGCCTTCCGGCAGCAATGGGGAGGGTCGCGCCAAACGAG
CGGCAGCAGGAGAGGGAAATGGATAG
back to top