mRNA_P-wetherbeei_contig6820.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6820.1.1
Unique NamemRNA_P-wetherbeei_contig6820.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6820.1.1 vs. uniprot
Match: A0A067CMZ8_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CMZ8_SAPPC)

HSP 1 Score: 65.9 bits (159), Expect = 2.160e-10
Identity = 45/89 (50.56%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:   31 RLQPASLVLIDRTLDLATPATRGGSLLQRMLAVLPRAGAKPNAEAGTAVAGTGRLRDM-PSAQKALASFPWPGPPSICHPNDPAAAAAV 294
            +LQPA L+LIDRTLDLATP++   SLL R+L  LP+A   P AE  T VA      ++ P+     AS  W G  S+CH  DP AAAAV
Sbjct:  256 QLQPAHLILIDRTLDLATPSSHQFSLLDRILQQLPKASTLPVAEHITQVAPLDAAAELAPNRLSVPAS--WRGGVSVCHGQDPTAAAAV 342
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BLAST of mRNA_P-wetherbeei_contig6820.1.1 vs. uniprot
Match: A0A1V9Z7M6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z7M6_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 6.300e-6
Identity = 38/77 (49.35%), Postives = 45/77 (58.44%), Query Frame = 1 
Query:   43 ASLVLIDRTLDLATPATRGGSLLQRMLAVLPRAGAKPNAEAG--TAVAGTGRLRDMPSAQKAL-ASFPWPGPPSICH 264
            ASL+LIDRTLDLATP +   SLL R+L  LPRA A P+  A   + VA      D P  Q  + AS  W G  +ICH
Sbjct:  274 ASLILIDRTLDLATPMSHQFSLLDRILQQLPRATAAPSTPAHHISQVAPLNTASDDPRYQNNIGASSQWNGGLNICH 350
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6820.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A067CMZ8_SAPPC2.160e-1050.56Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9Z7M6_9STRA6.300e-649.35Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6820contigP-wetherbeei_contig6820:107..607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size303
Hectar predicted targeting categoryother localisation
Exons2
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186939.9620519-CDS-P-wetherbeei_contig6820:106..2311683186939.9620519-CDS-P-wetherbeei_contig6820:106..231Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6820 107..231 -
1683186939.9734242-CDS-P-wetherbeei_contig6820:429..6071683186939.9734242-CDS-P-wetherbeei_contig6820:429..607Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6820 430..607 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6820.1.1prot_P-wetherbeei_contig6820.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6820 107..607 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6820.1.1

>prot_P-wetherbeei_contig6820.1.1 ID=prot_P-wetherbeei_contig6820.1.1|Name=mRNA_P-wetherbeei_contig6820.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
MRSGRVTAAARLQPASLVLIDRTLDLATPATRGGSLLQRMLAVLPRAGAK
PNAEAGTAVAGTGRLRDMPSAQKALASFPWPGPPSICHPNDPAAAAAVAA
L
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mRNA from alignment at P-wetherbeei_contig6820:107..607-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6820.1.1 ID=mRNA_P-wetherbeei_contig6820.1.1|Name=mRNA_P-wetherbeei_contig6820.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig6820:107..607- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGAGCGGCAGGGTGACGGCGGCGGCGCGACTGCAGCCAGCGTCCTT
GGTGCTTATCGATCGGACGCTGGACCTGGCAACGCCGGCAACGCGCGGTG
GCAGCCTGCTGCAGCGCATGCTGGCCGTGCTCCCCCGGGCGGGCGCGAAG
CCAAACGCAGAGGCGGGCACGGCTGTAGGTGCATCTGAGGGCGCGACTGG
GCGCAACGCCGGATCAGAGCTGACGGCGCCATACCTGTCGGACATTGGCG
TGATGCTTCCGGCTCTCTTTCCGGGAATGGGCGCTCCGCGACCCTTGATG
ACTTTGACGCAGAAGTCGAACGGCGCTGGCGACAGCAGGAGCAGTGGCAC
GATAAGCGGCGACGGGGATACCGCAGCCGGTACTGGCCGCCTGCGTGATA
TGCCTTCAGCCCAAAAGGCGCTGGCGTCCTTCCCGTGGCCGGGACCGCCG
TCCATCTGCCATCCGAACGATCCTGCCGCCGCGGCAGCCGTGGCGGCGCT
G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6820:107..607-

>mRNA_P-wetherbeei_contig6820.1.1 ID=mRNA_P-wetherbeei_contig6820.1.1|Name=mRNA_P-wetherbeei_contig6820.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig6820:107..607- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGAGCGGCAGGGTGACGGCGGCGGCGCGACTGCAGCCAGCGTCCTT
GGTGCTTATCGATCGGACGCTGGACCTGGCAACGCCGGCAACGCGCGGTG
GCAGCCTGCTGCAGCGCATGCTGGCCGTGCTCCCCCGGGCGGGCGCGAAG
CCAAACGCAGAGGCGGGCACGGCTGTAGCCGGTACTGGCCGCCTGCGTGA
TATGCCTTCAGCCCAAAAGGCGCTGGCGTCCTTCCCGTGGCCGGGACCGC
CGTCCATCTGCCATCCGAACGATCCTGCCGCCGCGGCAGCCGTGGCGGCG
CTG
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