mRNA_P-wetherbeei_contig682.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig682.4.1
Unique NamemRNA_P-wetherbeei_contig682.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig682.4.1 vs. uniprot
Match: UPI000B77AAF7 (signal peptidase II n=1 Tax=unclassified Bosea TaxID=2653178 RepID=UPI000B77AAF7)

HSP 1 Score: 235 bits (600), Expect = 3.150e-77
Identity = 119/150 (79.33%), Postives = 130/150 (86.67%), Query Frame = 1
Query:    4 MRVGGALAIALLVDVATKWLILTVVMVPPRVIEITPFFNLTLGFNPGVSFGMFRDIFLERPMVLAAIKVAIVVGLVVWAMRIEKAVEAIGLGLIAGGAAGNVVDRVRQGAVTDFLDFHIGNWHWPAFNTADVAISIGVALLLVGSLLPIR 453
            M +G A   ALLVDV TKWLI+TVVM PPRVIEIT FFNLTLGFNPGVSFGMF+D+FLERP+VL AIKVAI  GL+VWA+R+E  VE + LGLIAGGAAGNVVDRVRQGAVTDFLDFH+G+WHWP FN ADVAISIGVALLL GSL P R
Sbjct:    1 MWLGFAFVPALLVDVVTKWLIVTVVMAPPRVIEITSFFNLTLGFNPGVSFGMFQDVFLERPLVLGAIKVAITAGLLVWALRVENMVETVALGLIAGGAAGNVVDRVRQGAVTDFLDFHVGDWHWPTFNMADVAISIGVALLLAGSLRPFR 150          
BLAST of mRNA_P-wetherbeei_contig682.4.1 vs. uniprot
Match: A0A5S9PG67_9HYPH (Lipoprotein signal peptidase n=9 Tax=Proteobacteria TaxID=1224 RepID=A0A5S9PG67_9HYPH)

HSP 1 Score: 232 bits (591), Expect = 1.030e-75
Identity = 116/149 (77.85%), Postives = 126/149 (84.56%), Query Frame = 1
Query:   10 VGGALAIALLVDVATKWLILTVVMVPPRVIEITPFFNLTLGFNPGVSFGMFRDIFLERPMVLAAIKVAIVVGLVVWAMRIEKAVEAIGLGLIAGGAAGNVVDRVRQGAVTDFLDFHIGNWHWPAFNTADVAISIGVALLLVGSLLPIRP 456
            VGGA   ALL DVATKWLI+  VMVPPRVIE+ PFFNLTLGFN GVSFGMF+D+FLE P+VLA IKVAI VGL+VWAMR  + +EA  LGLIAGGAAGN+VDRV QGAVTDFLDFHIGNWHWP FN ADVAISIGVALLL GSL   +P
Sbjct:   13 VGGAFVAALLFDVATKWLIINAVMVPPRVIEVVPFFNLTLGFNTGVSFGMFQDVFLEHPLVLAGIKVAITVGLLVWAMRTRRTIEATALGLIAGGAAGNIVDRVHQGAVTDFLDFHIGNWHWPTFNMADVAISIGVALLLAGSLFSTQP 161          
BLAST of mRNA_P-wetherbeei_contig682.4.1 vs. uniprot
Match: UPI001E39A3BE (signal peptidase II n=1 Tax=Xanthobacter autotrophicus TaxID=280 RepID=UPI001E39A3BE)

HSP 1 Score: 229 bits (583), Expect = 1.710e-74
Identity = 117/152 (76.97%), Postives = 128/152 (84.21%), Query Frame = 1
Query:   10 VGGALAIALLVDVATKWLILTVVMVPPRVIEITPFFNLTLGFNPGVSFGMFRDIFLERPMVLAAIKVAIVVGLVVWAMRIEKAVEAIGLGLIAGGAAGNVVDRVRQGAVTDFLDFHIGNWHWPAFNTADVAISIGVALLLVGSL----LPIR 453
            VG A A ALL D+ATKWLI+ VVMVPPR IEI PFFNLTLGFN GVSFGMFRD+FLE P+VLA IKV I +GLVVWAMR ++A+EA  LGLIAGGAAGN+VDRVR GAVTDFLDFH+G WHWPAFN ADVAIS GVALLL GSL    LP+R
Sbjct:   13 VGSAFAAALLFDIATKWLIINVVMVPPRTIEIMPFFNLTLGFNTGVSFGMFRDVFLEWPLVLAGIKVVIAIGLVVWAMRTDRAIEAAALGLIAGGAAGNIVDRVRHGAVTDFLDFHVGTWHWPAFNMADVAISTGVALLLAGSLFSSQLPVR 164          
BLAST of mRNA_P-wetherbeei_contig682.4.1 vs. uniprot
Match: A0A218PKV3_9HYPH (Lipoprotein signal peptidase n=1 Tax=Hyphomicrobium sp. GJ21 TaxID=113574 RepID=A0A218PKV3_9HYPH)

HSP 1 Score: 227 bits (579), Expect = 6.940e-74
Identity = 115/150 (76.67%), Postives = 125/150 (83.33%), Query Frame = 1
Query:   10 VGGALAIALLVDVATKWLILTVVMVPPRVIEITPFFNLTLGFNPGVSFGMFRDIFLERPMVLAAIKVAIVVGLVVWAMRIEKAVEAIGLGLIAGGAAGNVVDRVRQGAVTDFLDFHIGNWHWPAFNTADVAISIGVALLLVGSLLPIRPA 459
            VGG  A ALL DVATKWLIL VVMVPPR+IE+TPFFNL+L FN GVSFGMF+D+FLERP+VL  IKVAI VGL+VWAMR  + VEA  LGLIAGGAAGN+VDRVRQGAVTDFLDFH  NWHWPAFN ADVAI +GV LLL  S L  RPA
Sbjct:   13 VGGGFAAALLFDVATKWLILNVVMVPPRIIEVTPFFNLSLSFNTGVSFGMFQDLFLERPLVLVGIKVAITVGLLVWAMRTHRIVEATALGLIAGGAAGNIVDRVRQGAVTDFLDFHAANWHWPAFNMADVAIGVGVVLLLARSFLSSRPA 162          
BLAST of mRNA_P-wetherbeei_contig682.4.1 vs. uniprot
Match: A0A1L9CA87_9HYPH (Lipoprotein signal peptidase n=3 Tax=Rhizobium/Agrobacterium group TaxID=227290 RepID=A0A1L9CA87_9HYPH)

HSP 1 Score: 226 bits (577), Expect = 1.000e-73
Identity = 114/152 (75.00%), Postives = 126/152 (82.89%), Query Frame = 1
Query:    4 MRVGGALAIALLVDVATKWLILTVVMVPPRVIEITPFFNLTLGFNPGVSFGMFRDIFLERPMVLAAIKVAIVVGLVVWAMRIEKAVEAIGLGLIAGGAAGNVVDRVRQGAVTDFLDFHIGNWHWPAFNTADVAISIGVALLLVGSLLPIRPA 459
            M +GGA A ALLVDVATKWLIL  VMVPPRVIE+TPFFNLTLGFN GVSFGMF+D FLERP+VLA IK+ I V LVVWAMR  + +EA  LGLIAGGAAGN+VD VRQGAVTDFLDFH+G WHWP FN ADVAI+ G ALL+ GSL   +PA
Sbjct:    1 MWIGGAFAAALLVDVATKWLILNAVMVPPRVIELTPFFNLTLGFNTGVSFGMFQDFFLERPLVLAGIKMVIAVALVVWAMRTVRMIEATALGLIAGGAAGNIVDGVRQGAVTDFLDFHVGTWHWPTFNMADVAITTGAALLMAGSLFSSQPA 152          
BLAST of mRNA_P-wetherbeei_contig682.4.1 vs. uniprot
Match: A0A259LKU1_9HYPH (Lipoprotein signal peptidase n=2 Tax=unclassified Hyphomicrobiales TaxID=41292 RepID=A0A259LKU1_9HYPH)

HSP 1 Score: 217 bits (553), Expect = 6.290e-70
Identity = 106/147 (72.11%), Postives = 121/147 (82.31%), Query Frame = 1
Query:   13 GGALAIALLVDVATKWLILTVVMVPPRVIEITPFFNLTLGFNPGVSFGMFRDIFLERPMVLAAIKVAIVVGLVVWAMRIEKAVEAIGLGLIAGGAAGNVVDRVRQGAVTDFLDFHIGNWHWPAFNTADVAISIGVALLLVGSLLPIR 453
            GGALA+AL VD  TKWLI+ +VMVPPR IEI PFFNLTLGFN GVSFGMFR++FL+RP++LA IK+ IV GL+VWAMR EK  E I LGLIAGGA GNV+DR+RQGAVTDFLDFH+G WHWPAFN AD  I+IGV LL+  S  P R
Sbjct:   14 GGALALALAVDFVTKWLIVNIVMVPPRTIEIAPFFNLTLGFNTGVSFGMFRELFLDRPLLLAGIKMVIVAGLLVWAMRTEKPSETISLGLIAGGATGNVLDRIRQGAVTDFLDFHVGGWHWPAFNMADTMITIGVVLLIAASFWPAR 160          
BLAST of mRNA_P-wetherbeei_contig682.4.1 vs. uniprot
Match: UPI001E3A8C40 (signal peptidase II n=1 Tax=Mesorhizobium comanense TaxID=2502215 RepID=UPI001E3A8C40)

HSP 1 Score: 214 bits (546), Expect = 7.310e-69
Identity = 106/148 (71.62%), Postives = 121/148 (81.76%), Query Frame = 1
Query:   13 GGALAIALLVDVATKWLILTVVMVPPRVIEITPFFNLTLGFNPGVSFGMFRDIFLERPMVLAAIKVAIVVGLVVWAMRIEKAVEAIGLGLIAGGAAGNVVDRVRQGAVTDFLDFHIGNWHWPAFNTADVAISIGVALLLVGSLLPIRP 456
            GGALA A+ VD  TKWL++ +VMVPPR IEI PFFNLTLGFN GVSFGMFR IFL+RP+VLA I++ IV  LVVWAMR  +  E I LGLI GGA GNV+DR+RQGAVTDFLDF++GNWHWPAFN ADV I+IGV LL+ GSL P RP
Sbjct:   14 GGALAAAVAVDFVTKWLMVNIVMVPPRTIEIAPFFNLTLGFNTGVSFGMFRGIFLDRPLVLAGIQMVIVAWLVVWAMRTPRRSETISLGLIGGGATGNVLDRIRQGAVTDFLDFYVGNWHWPAFNMADVVIAIGVVLLITGSLWPARP 161          
BLAST of mRNA_P-wetherbeei_contig682.4.1 vs. uniprot
Match: A0A117N3B8_RHILI (Lipoprotein signal peptidase n=2 Tax=Rhizobium loti TaxID=381 RepID=A0A117N3B8_RHILI)

HSP 1 Score: 213 bits (543), Expect = 1.510e-68
Identity = 103/147 (70.07%), Postives = 119/147 (80.95%), Query Frame = 1
Query:   13 GGALAIALLVDVATKWLILTVVMVPPRVIEITPFFNLTLGFNPGVSFGMFRDIFLERPMVLAAIKVAIVVGLVVWAMRIEKAVEAIGLGLIAGGAAGNVVDRVRQGAVTDFLDFHIGNWHWPAFNTADVAISIGVALLLVGSLLPIR 453
            GG+L  AL  D  TKW+IL +VMVPPR IEITPFFNLTLGFN GVSFGMFR+ FLERP+VLA I + IV GL++WAMR  K  E IGLGL+AGGA GNV+DR+RQGAVTDFLDFH+G WHWPAFNTAD  I+IGV +L+ GS  P +
Sbjct:    3 GGSLVAALATDAVTKWVILNIVMVPPRTIEITPFFNLTLGFNTGVSFGMFREFFLERPLVLAGIMLVIVAGLLIWAMRTAKRSETIGLGLVAGGALGNVLDRMRQGAVTDFLDFHVGGWHWPAFNTADAMITIGVIVLIAGSFWPAK 149          
BLAST of mRNA_P-wetherbeei_contig682.4.1 vs. uniprot
Match: Q11N20_CHESB (Lipoprotein signal peptidase n=2 Tax=Phyllobacteriaceae TaxID=69277 RepID=Q11N20_CHESB)

HSP 1 Score: 213 bits (541), Expect = 4.220e-68
Identity = 106/146 (72.60%), Postives = 120/146 (82.19%), Query Frame = 1
Query:   16 GALAIALLVDVATKWLILTVVMVPPRVIEITPFFNLTLGFNPGVSFGMFRDIFLERPMVLAAIKVAIVVGLVVWAMRIEKAVEAIGLGLIAGGAAGNVVDRVRQGAVTDFLDFHIGNWHWPAFNTADVAISIGVALLLVGSLLPIR 453
            GALA AL VD+ TKWLIL VVMVPPR IEI PFFNLTLGFN GVSFGMFR+ FL+RP++LA IK+ IV GL++WAMR  K +E +GLGLIAGGA GN+VDR+ QGAVTDFLDF IG WHWPAFN AD  I+IGVALL+ GS  P R
Sbjct:   15 GALAAALAVDLVTKWLILNVVMVPPRTIEIAPFFNLTLGFNTGVSFGMFREFFLDRPLMLAGIKMVIVAGLLLWAMRTPKPLETLGLGLIAGGAMGNIVDRISQGAVTDFLDFRIGGWHWPAFNMADTTITIGVALLIAGSFWPGR 160          
BLAST of mRNA_P-wetherbeei_contig682.4.1 vs. uniprot
Match: A0A521RKL5_9HYPH (Lipoprotein signal peptidase n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521RKL5_9HYPH)

HSP 1 Score: 213 bits (541), Expect = 4.220e-68
Identity = 103/141 (73.05%), Postives = 117/141 (82.98%), Query Frame = 1
Query:   16 GALAIALLVDVATKWLILTVVMVPPRVIEITPFFNLTLGFNPGVSFGMFRDIFLERPMVLAAIKVAIVVGLVVWAMRIEKAVEAIGLGLIAGGAAGNVVDRVRQGAVTDFLDFHIGNWHWPAFNTADVAISIGVALLLVGS 438
            GA+A AL VD  TKWLIL VVM PPR IEI PFFNLTLGFN GVSFGMFR+ FL+RP+VLA IK+ IV GL+VWAMR E+  E + LGL+AGGA GNV+DR+RQGAVTDFLDFH+GNWHWPAFN AD  I+IGV LL+ GS
Sbjct:   15 GAVATALAVDFVTKWLILNVVMAPPRTIEIAPFFNLTLGFNTGVSFGMFREFFLDRPLVLAGIKMVIVAGLLVWAMRTERRTETVSLGLVAGGAVGNVLDRMRQGAVTDFLDFHVGNWHWPAFNMADTMITIGVVLLIAGS 155          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig682.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000B77AAF73.150e-7779.33signal peptidase II n=1 Tax=unclassified Bosea Tax... [more]
A0A5S9PG67_9HYPH1.030e-7577.85Lipoprotein signal peptidase n=9 Tax=Proteobacteri... [more]
UPI001E39A3BE1.710e-7476.97signal peptidase II n=1 Tax=Xanthobacter autotroph... [more]
A0A218PKV3_9HYPH6.940e-7476.67Lipoprotein signal peptidase n=1 Tax=Hyphomicrobiu... [more]
A0A1L9CA87_9HYPH1.000e-7375.00Lipoprotein signal peptidase n=3 Tax=Rhizobium/Agr... [more]
A0A259LKU1_9HYPH6.290e-7072.11Lipoprotein signal peptidase n=2 Tax=unclassified ... [more]
UPI001E3A8C407.310e-6971.62signal peptidase II n=1 Tax=Mesorhizobium comanens... [more]
A0A117N3B8_RHILI1.510e-6870.07Lipoprotein signal peptidase n=2 Tax=Rhizobium lot... [more]
Q11N20_CHESB4.220e-6872.60Lipoprotein signal peptidase n=2 Tax=Phyllobacteri... [more]
A0A521RKL5_9HYPH4.220e-6873.05Lipoprotein signal peptidase n=1 Tax=Reyranella sp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig682contigP-wetherbeei_contig682:6689..7147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1320556.AVBP01000003_gene3874
PFAMsPeptidase_A8
Model size459
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03101
KEGG Pathwayko03060,map03060
Hectar predicted targeting categorysignal peptide
Exons1
Evalue5.09e-74
EggNOG OGsCOG0597@1|root,COG0597@2|Bacteria,1RGV9@1224|Proteobacteria,2UBUC@28211|Alphaproteobacteria,43M12@69277|Phyllobacteriaceae
EC3.4.23.36
DescriptionThis protein specifically catalyzes the removal of signal peptides from prolipoproteins
Cds size456
COG categoryMU
BRITEko00000,ko00001,ko01000,ko01002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186939.9053073-UTR-P-wetherbeei_contig682:6688..66911683186939.9053073-UTR-P-wetherbeei_contig682:6688..6691Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig682 6689..6691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186939.9178205-CDS-P-wetherbeei_contig682:6691..71471683186939.9178205-CDS-P-wetherbeei_contig682:6691..7147Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig682 6692..7147 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig682.4.1prot_P-wetherbeei_contig682.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig682 6692..7147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig682.4.1

>prot_P-wetherbeei_contig682.4.1 ID=prot_P-wetherbeei_contig682.4.1|Name=mRNA_P-wetherbeei_contig682.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=152bp
MRVGGALAIALLVDVATKWLILTVVMVPPRVIEITPFFNLTLGFNPGVSF
GMFRDIFLERPMVLAAIKVAIVVGLVVWAMRIEKAVEAIGLGLIAGGAAG
NVVDRVRQGAVTDFLDFHIGNWHWPAFNTADVAISIGVALLLVGSLLPIR
PA
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mRNA from alignment at P-wetherbeei_contig682:6689..7147+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig682.4.1 ID=mRNA_P-wetherbeei_contig682.4.1|Name=mRNA_P-wetherbeei_contig682.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig682:6689..7147+ (Phaeothamnion wetherbeei SAG_119_79)
GTGATGAGGGTGGGTGGCGCACTAGCCATCGCTCTTCTCGTTGATGTAGC CACCAAGTGGTTGATTCTAACGGTCGTTATGGTGCCGCCGCGCGTTATAG AAATCACTCCCTTTTTCAATTTGACACTGGGCTTCAATCCTGGGGTGAGC TTCGGGATGTTCCGAGATATCTTTCTTGAGCGTCCGATGGTGCTGGCCGC CATCAAAGTGGCGATCGTCGTGGGACTTGTGGTCTGGGCTATGCGCATAG AAAAAGCGGTCGAGGCTATCGGGCTAGGTCTGATTGCCGGCGGAGCGGCA GGAAACGTCGTGGACCGTGTGCGCCAGGGCGCCGTGACCGACTTCCTTGA TTTCCACATCGGCAATTGGCACTGGCCTGCCTTCAACACGGCGGATGTTG CCATCAGTATTGGCGTCGCGCTGCTACTGGTGGGCTCTCTGCTCCCGATA CGGCCTGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig682:6689..7147+

>mRNA_P-wetherbeei_contig682.4.1 ID=mRNA_P-wetherbeei_contig682.4.1|Name=mRNA_P-wetherbeei_contig682.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig682:6689..7147+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGGTGGGTGGCGCACTAGCCATCGCTCTTCTCGTTGATGTAGCCAC
CAAGTGGTTGATTCTAACGGTCGTTATGGTGCCGCCGCGCGTTATAGAAA
TCACTCCCTTTTTCAATTTGACACTGGGCTTCAATCCTGGGGTGAGCTTC
GGGATGTTCCGAGATATCTTTCTTGAGCGTCCGATGGTGCTGGCCGCCAT
CAAAGTGGCGATCGTCGTGGGACTTGTGGTCTGGGCTATGCGCATAGAAA
AAGCGGTCGAGGCTATCGGGCTAGGTCTGATTGCCGGCGGAGCGGCAGGA
AACGTCGTGGACCGTGTGCGCCAGGGCGCCGTGACCGACTTCCTTGATTT
CCACATCGGCAATTGGCACTGGCCTGCCTTCAACACGGCGGATGTTGCCA
TCAGTATTGGCGTCGCGCTGCTACTGGTGGGCTCTCTGCTCCCGATACGG
CCTGCG
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