mRNA_P-wetherbeei_contig682.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig682.1.1
Unique NamemRNA_P-wetherbeei_contig682.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig682.1.1 vs. uniprot
Match: A0A1Q3JRM6_9PROT (Transcriptional regulator n=1 Tax=Alphaproteobacteria bacterium 64-6 TaxID=1895710 RepID=A0A1Q3JRM6_9PROT)

HSP 1 Score: 212 bits (540), Expect = 9.770e-69
Identity = 109/132 (82.58%), Postives = 118/132 (89.39%), Query Frame = 1
Query:    1 MITIGALSQCTGVNIETIRYYERISLIPSPPRTDSGRRLYDSDDVRRLAFIRHSRDLGFEIPVIKQMLALQGKPEASCEQVSQIAYNQLAAVETRIRRLLGLRSELTRMIHECNNGNVATCRIIEVLADSAD 396
            MITIGALS+ TGVNIETIRYYERI LIP PPRTDSGRRLY ++DVRRL FIRH+RDLGF+I  IK MLALQG PEA CEQVS+IA NQL AVE+RIRRLLGLR+ELTRMI EC+NG VATCRIIEVLADSAD
Sbjct:    1 MITIGALSKRTGVNIETIRYYERIRLIPPPPRTDSGRRLYGAEDVRRLTFIRHARDLGFDIAAIKTMLALQGVPEAPCEQVSRIATNQLEAVESRIRRLLGLRTELTRMIKECDNGKVATCRIIEVLADSAD 132          
BLAST of mRNA_P-wetherbeei_contig682.1.1 vs. uniprot
Match: A0A521RKH1_9HYPH (MerR family transcriptional regulator n=3 Tax=Hyphomicrobiales TaxID=356 RepID=A0A521RKH1_9HYPH)

HSP 1 Score: 205 bits (522), Expect = 5.400e-66
Identity = 106/133 (79.70%), Postives = 117/133 (87.97%), Query Frame = 1
Query:    1 MITIGALSQCTGVNIETIRYYERISLIPSPPRTDSGRRLYDSDDVRRLAFIRHSRDLGFEIPVIKQMLALQGKPEASCEQVSQIAYNQLAAVETRIRRLLGLRSELTRMIHECNNGNVATCRIIEVLADSADQ 399
            MITIGALS+ TGVNIETIRYYERI LIP PPRTDSGRRLY ++DVRRL FIRH+RDLGF+I  IK MLALQ  PEASCEQVS+IA +QL AVE+RIRRLLGLR+ELTRMI+EC+NG VATCRIIEVLAD   Q
Sbjct:    1 MITIGALSKHTGVNIETIRYYERIRLIPPPPRTDSGRRLYGAEDVRRLTFIRHARDLGFDIAAIKTMLALQEVPEASCEQVSRIASDQLEAVESRIRRLLGLRTELTRMINECDNGKVATCRIIEVLADPPGQ 133          
BLAST of mRNA_P-wetherbeei_contig682.1.1 vs. uniprot
Match: A0A0D7EIX3_RHOPL (Transcriptional regulator n=7 Tax=Proteobacteria TaxID=1224 RepID=A0A0D7EIX3_RHOPL)

HSP 1 Score: 205 bits (522), Expect = 5.400e-66
Identity = 104/130 (80.00%), Postives = 117/130 (90.00%), Query Frame = 1
Query:    1 MITIGALSQCTGVNIETIRYYERISLIPSPPRTDSGRRLYDSDDVRRLAFIRHSRDLGFEIPVIKQMLALQGKPEASCEQVSQIAYNQLAAVETRIRRLLGLRSELTRMIHECNNGNVATCRIIEVLADS 390
            MITIGALSQ TGVNIETIRYYERI+LIP PPRT+S RRLY+++DVRRL FIRHSRDLGF+IP IK MLALQ +PE+SCEQVS+IA +QL AVE RIRRLLGL+SELTRMI  C+NG VA+CRIIEVLADS
Sbjct:    1 MITIGALSQRTGVNIETIRYYERINLIPPPPRTESRRRLYEAEDVRRLTFIRHSRDLGFDIPAIKTMLALQERPESSCEQVSRIATDQLEAVEVRIRRLLGLKSELTRMIKSCDNGKVASCRIIEVLADS 130          
BLAST of mRNA_P-wetherbeei_contig682.1.1 vs. uniprot
Match: Q11N15_CHESB (Transcriptional regulator, MerR family n=1 Tax=Chelativorans sp. (strain BNC1) TaxID=266779 RepID=Q11N15_CHESB)

HSP 1 Score: 204 bits (519), Expect = 1.550e-65
Identity = 105/133 (78.95%), Postives = 116/133 (87.22%), Query Frame = 1
Query:    1 MITIGALSQCTGVNIETIRYYERISLIPSPPRTDSGRRLYDSDDVRRLAFIRHSRDLGFEIPVIKQMLALQGKPEASCEQVSQIAYNQLAAVETRIRRLLGLRSELTRMIHECNNGNVATCRIIEVLADSADQ 399
            M TIGALS+ TGVNIETIRYYERI LIP PPRT+SGRRLY +DDVRRL FIRH+RDLGF+I  IK ML+LQ  PEASCEQVS+IA +QL  VE+RIRRLLGLR+ELTRMI EC+NGNVA CRIIEVLADSA Q
Sbjct:    1 MFTIGALSKRTGVNIETIRYYERIMLIPPPPRTESGRRLYAADDVRRLTFIRHARDLGFDIAAIKTMLSLQEVPEASCEQVSRIAADQLETVESRIRRLLGLRTELTRMIDECDNGNVANCRIIEVLADSAGQ 133          
BLAST of mRNA_P-wetherbeei_contig682.1.1 vs. uniprot
Match: A0A3G2ULT2_SPHYA (MerR family transcriptional regulator n=6 Tax=Sphingomonadaceae TaxID=41297 RepID=A0A3G2ULT2_SPHYA)

HSP 1 Score: 201 bits (510), Expect = 3.640e-64
Identity = 102/133 (76.69%), Postives = 116/133 (87.22%), Query Frame = 1
Query:    1 MITIGALSQCTGVNIETIRYYERISLIPSPPRTDSGRRLYDSDDVRRLAFIRHSRDLGFEIPVIKQMLALQGKPEASCEQVSQIAYNQLAAVETRIRRLLGLRSELTRMIHECNNGNVATCRIIEVLADSADQ 399
            MITIGALS+ TGVNIETIRYYERI LIP PPRTDSGRRLY ++DVRRL FIR++RDLGF+I  IK MLALQ +PEASC++VSQIA +QL AVE+RIRRLLGLR+EL RM+ EC+NG VATCRIIEVL DS  Q
Sbjct:    1 MITIGALSKRTGVNIETIRYYERIKLIPPPPRTDSGRRLYGAEDVRRLTFIRNARDLGFDISAIKTMLALQEEPEASCQEVSQIATDQLEAVESRIRRLLGLRTELIRMVQECDNGKVATCRIIEVLGDSPGQ 133          
BLAST of mRNA_P-wetherbeei_contig682.1.1 vs. uniprot
Match: A0A101KSQ5_RHILI (Transcriptional regulator n=1 Tax=Rhizobium loti TaxID=381 RepID=A0A101KSQ5_RHILI)

HSP 1 Score: 200 bits (509), Expect = 5.170e-64
Identity = 102/134 (76.12%), Postives = 117/134 (87.31%), Query Frame = 1
Query:    1 MITIGALSQCTGVNIETIRYYERISLIPSPPRTDSGRRLYDSDDVRRLAFIRHSRDLGFEIPVIKQMLALQGKPEASCEQVSQIAYNQLAAVETRIRRLLGLRSELTRMIHECNNGNVATCRIIEVLADSADQQ 402
            MITIGALS+ TGVNIETIRYYERI L+P PPRT SGRRLY ++DVRRL FIRH+RDLGF+I  IK MLALQ  PEASC++VS+IA +QL AVE+RIRRLLGLR+ELTRMI EC+NG VATCRIIEVLA++ D Q
Sbjct:    1 MITIGALSKRTGVNIETIRYYERIRLLPPPPRTGSGRRLYGAEDVRRLTFIRHARDLGFDISAIKTMLALQEVPEASCDEVSRIATDQLQAVESRIRRLLGLRTELTRMIKECDNGKVATCRIIEVLAEAPDAQ 134          
BLAST of mRNA_P-wetherbeei_contig682.1.1 vs. uniprot
Match: A0A327KEY3_9HYPH (HTH-type transcriptional regulator ZntR n=2 Tax=Hyphomicrobiaceae TaxID=45401 RepID=A0A327KEY3_9HYPH)

HSP 1 Score: 197 bits (502), Expect = 6.020e-63
Identity = 101/132 (76.52%), Postives = 113/132 (85.61%), Query Frame = 1
Query:    1 MITIGALSQCTGVNIETIRYYERISLIPSPPRTDSGRRLYDSDDVRRLAFIRHSRDLGFEIPVIKQMLALQGKPEASCEQVSQIAYNQLAAVETRIRRLLGLRSELTRMIHECNNGNVATCRIIEVLADSAD 396
            MITIG LS+ TGVNIETIRYYERI LIP  PRTDSGRRLY ++DVRRL FIRH+RDLGF+I  IK MLALQ  P+ASC+QV+QIA +QL AVE+RIRRLLGLR+ELTRMI EC+NG VA CRIIEVLAD  D
Sbjct:    1 MITIGTLSKRTGVNIETIRYYERIKLIPPAPRTDSGRRLYGAEDVRRLTFIRHARDLGFDIAAIKTMLALQDVPDASCQQVTQIATDQLEAVESRIRRLLGLRTELTRMIKECDNGKVANCRIIEVLADPPD 132          
BLAST of mRNA_P-wetherbeei_contig682.1.1 vs. uniprot
Match: UPI0015744DE8 (helix-turn-helix domain-containing protein n=1 Tax=Rhizobium radiobacter TaxID=358 RepID=UPI0015744DE8)

HSP 1 Score: 197 bits (502), Expect = 7.080e-63
Identity = 101/130 (77.69%), Postives = 114/130 (87.69%), Query Frame = 1
Query:    1 MITIGALSQCTGVNIETIRYYERISLIPSPPRTDSGRRLYDSDDVRRLAFIRHSRDLGFEIPVIKQMLALQGKPEASCEQVSQIAYNQLAAVETRIRRLLGLRSELTRMIHECNNGNVATCRIIEVLADS 390
            M TIGALSQ T VNIETIRYYERI+LIPSPPRT+SGRRLYD DDVRRLAFIRH+R+LGF+I  IK MLALQG PEASCE++S+IA +QLAAVE+RI RLL LR+EL RMI EC+NG V  CRIIEVLAD+
Sbjct:    1 MFTIGALSQRTSVNIETIRYYERINLIPSPPRTESGRRLYDMDDVRRLAFIRHARELGFDIAAIKTMLALQGVPEASCERLSRIASDQLAAVESRIDRLLELRTELMRMIDECDNGKVGNCRIIEVLADA 130          
BLAST of mRNA_P-wetherbeei_contig682.1.1 vs. uniprot
Match: UPI00069C58EC (helix-turn-helix domain-containing protein n=1 Tax=Agrobacterium tumefaciens complex TaxID=1183400 RepID=UPI00069C58EC)

HSP 1 Score: 197 bits (501), Expect = 1.010e-62
Identity = 100/131 (76.34%), Postives = 115/131 (87.79%), Query Frame = 1
Query:    1 MITIGALSQCTGVNIETIRYYERISLIPSPPRTDSGRRLYDSDDVRRLAFIRHSRDLGFEIPVIKQMLALQGKPEASCEQVSQIAYNQLAAVETRIRRLLGLRSELTRMIHECNNGNVATCRIIEVLADSA 393
            M TIGA+S+ T VNIETIRYYERI+LIPSPPRT+SGRRLYD+DDVRRL FIRH+R+LGF+I  IK MLALQG PEA CE+VSQIA +QLAAVE+RI RLL LR+EL RMI EC+NG V +CRIIEVLAD+A
Sbjct:    1 MFTIGAISRRTSVNIETIRYYERINLIPSPPRTESGRRLYDTDDVRRLTFIRHARELGFDIAAIKTMLALQGVPEAPCERVSQIASDQLAAVESRIDRLLELRAELMRMISECDNGKVGSCRIIEVLADAA 131          
BLAST of mRNA_P-wetherbeei_contig682.1.1 vs. uniprot
Match: UPI0010F6CDB9 (helix-turn-helix domain-containing protein n=1 Tax=Mesorhizobium comanense TaxID=2502215 RepID=UPI0010F6CDB9)

HSP 1 Score: 197 bits (500), Expect = 1.210e-62
Identity = 102/136 (75.00%), Postives = 116/136 (85.29%), Query Frame = 1
Query:    1 MITIGALSQCTGVNIETIRYYERISLIPSPPRTDSGRRLYDSDDVRRLAFIRHSRDLGFEIPVIKQMLALQGKPEASCEQVSQIAYNQLAAVETRIRRLLGLRSELTRMIHECNNGNVATCRIIEVLADSADQQGD 408
            MI IGALS+ TGVNIETIRYYERI LIP P RTDSGRRLY ++DVRRL FIRH+RDLGF+   IK MLALQ  PEASCE+VS+IA +QLAAVE+RIRRL GLR+ELTRMI+EC+NG VATCRIIEVLA++  Q  D
Sbjct:    1 MIAIGALSRRTGVNIETIRYYERIRLIPPPGRTDSGRRLYGAEDVRRLTFIRHARDLGFDTAAIKAMLALQEVPEASCEEVSRIAADQLAAVESRIRRLAGLRTELTRMINECDNGEVATCRIIEVLAEAPGQTVD 136          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig682.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Q3JRM6_9PROT9.770e-6982.58Transcriptional regulator n=1 Tax=Alphaproteobacte... [more]
A0A521RKH1_9HYPH5.400e-6679.70MerR family transcriptional regulator n=3 Tax=Hyph... [more]
A0A0D7EIX3_RHOPL5.400e-6680.00Transcriptional regulator n=7 Tax=Proteobacteria T... [more]
Q11N15_CHESB1.550e-6578.95Transcriptional regulator, MerR family n=1 Tax=Che... [more]
A0A3G2ULT2_SPHYA3.640e-6476.69MerR family transcriptional regulator n=6 Tax=Sphi... [more]
A0A101KSQ5_RHILI5.170e-6476.12Transcriptional regulator n=1 Tax=Rhizobium loti T... [more]
A0A327KEY3_9HYPH6.020e-6376.52HTH-type transcriptional regulator ZntR n=2 Tax=Hy... [more]
UPI0015744DE87.080e-6377.69helix-turn-helix domain-containing protein n=1 Tax... [more]
UPI00069C58EC1.010e-6276.34helix-turn-helix domain-containing protein n=1 Tax... [more]
UPI0010F6CDB91.210e-6275.00helix-turn-helix domain-containing protein n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig682contigP-wetherbeei_contig682:409..822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1197906.CAJQ02000014_gene335
PFAMsMerR,MerR-DNA-bind,MerR_1
Model size414
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K13639
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.53e-54
EggNOG OGsCOG0789@1|root,COG0789@2|Bacteria,1MZ3P@1224|Proteobacteria,2U9QA@28211|Alphaproteobacteria,3K00W@41294|Bradyrhizobiaceae
Descriptionhelix_turn_helix, mercury resistance
Cds size414
COG categoryK
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186939.7851596-CDS-P-wetherbeei_contig682:408..8221683186939.7851596-CDS-P-wetherbeei_contig682:408..822Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig682 409..822 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig682.1.1prot_P-wetherbeei_contig682.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig682 409..822 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig682.1.1

>prot_P-wetherbeei_contig682.1.1 ID=prot_P-wetherbeei_contig682.1.1|Name=mRNA_P-wetherbeei_contig682.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
MITIGALSQCTGVNIETIRYYERISLIPSPPRTDSGRRLYDSDDVRRLAF
IRHSRDLGFEIPVIKQMLALQGKPEASCEQVSQIAYNQLAAVETRIRRLL
GLRSELTRMIHECNNGNVATCRIIEVLADSADQQGDS*
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mRNA from alignment at P-wetherbeei_contig682:409..822-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig682.1.1 ID=mRNA_P-wetherbeei_contig682.1.1|Name=mRNA_P-wetherbeei_contig682.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig682:409..822- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCACTATCGGGGCGCTATCCCAATGCACGGGGGTGAATATTGAGAC AATCCGCTATTATGAGCGGATCAGCCTCATTCCGTCGCCGCCCCGGACGG ACAGCGGACGACGTCTCTACGATTCTGATGACGTCCGGCGATTGGCTTTT ATCCGGCACTCCAGAGACCTCGGCTTCGAAATTCCGGTCATAAAGCAGAT GCTCGCGTTGCAGGGCAAGCCGGAGGCCTCCTGTGAGCAAGTTAGCCAAA TTGCGTACAATCAACTCGCTGCGGTCGAGACGAGGATACGTCGACTGCTT GGCCTCAGAAGTGAACTCACTCGAATGATTCATGAGTGCAACAATGGGAA CGTCGCCACCTGTCGGATCATAGAAGTCCTTGCCGATTCTGCGGATCAGC AAGGCGATTCGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig682:409..822-

>mRNA_P-wetherbeei_contig682.1.1 ID=mRNA_P-wetherbeei_contig682.1.1|Name=mRNA_P-wetherbeei_contig682.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig682:409..822- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCACTATCGGGGCGCTATCCCAATGCACGGGGGTGAATATTGAGAC
AATCCGCTATTATGAGCGGATCAGCCTCATTCCGTCGCCGCCCCGGACGG
ACAGCGGACGACGTCTCTACGATTCTGATGACGTCCGGCGATTGGCTTTT
ATCCGGCACTCCAGAGACCTCGGCTTCGAAATTCCGGTCATAAAGCAGAT
GCTCGCGTTGCAGGGCAAGCCGGAGGCCTCCTGTGAGCAAGTTAGCCAAA
TTGCGTACAATCAACTCGCTGCGGTCGAGACGAGGATACGTCGACTGCTT
GGCCTCAGAAGTGAACTCACTCGAATGATTCATGAGTGCAACAATGGGAA
CGTCGCCACCTGTCGGATCATAGAAGTCCTTGCCGATTCTGCGGATCAGC
AAGGCGATTCGTAA
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