mRNA_P-wetherbeei_contig6815.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6815.2.1
Unique NamemRNA_P-wetherbeei_contig6815.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6815.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6815contigP-wetherbeei_contig6815:958..1225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog112098.XP_008615902.1
Preferred nameTRMT13
PFAMsTRM13,zf-TRM13_CCCH,zf-U11-48K
Model size268
Max annot lvl2759|Eukaryota
KEGG koko:K15446
Hectar predicted targeting categoryother localisation
GOsGO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008175,GO:0009451,GO:0009628,GO:0009651,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0071704,GO:0090304,GO:0106050,GO:0140098,GO:0140101,GO:1901360
Exons1
Evalue4.23e-06
EggNOG OGsKOG2811@1|root,KOG2811@2759|Eukaryota
EC2.1.1.225
DescriptiontRNA methylation
Cds size267
COG categoryS
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186939.5892-CDS-P-wetherbeei_contig6815:958..12251683186939.5892-CDS-P-wetherbeei_contig6815:958..1225Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6815 959..1225 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6815.2.1prot_P-wetherbeei_contig6815.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6815 959..1225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6815.2.1

>prot_P-wetherbeei_contig6815.2.1 ID=prot_P-wetherbeei_contig6815.2.1|Name=mRNA_P-wetherbeei_contig6815.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=89bp
SAAAAIAAGASDSKERSATLPARVEAAYARLVGPLRKEQWFPAECMPLMA
AADATQTKFRRSRHIVQQASIIGHMMREGLLNGSGSGDG
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mRNA from alignment at P-wetherbeei_contig6815:958..1225-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6815.2.1 ID=mRNA_P-wetherbeei_contig6815.2.1|Name=mRNA_P-wetherbeei_contig6815.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=268bp|location=Sequence derived from alignment at P-wetherbeei_contig6815:958..1225- (Phaeothamnion wetherbeei SAG_119_79)
TCCGCCGCCGCTGCCATAGCGGCGGGCGCATCGGACAGCAAGGAGCGTAG
CGCGACGCTCCCGGCGCGAGTGGAGGCGGCGTACGCGCGGTTGGTCGGTC
CGCTTCGCAAGGAGCAGTGGTTTCCAGCGGAGTGCATGCCGCTTATGGCG
GCTGCGGATGCCACCCAGACAAAATTCCGGCGATCGCGGCACATCGTCCA
GCAGGCGTCCATCATCGGACACATGATGCGAGAGGGCCTTTTGAATGGCA
GCGGCAGCGGCGACGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6815:958..1225-

>mRNA_P-wetherbeei_contig6815.2.1 ID=mRNA_P-wetherbeei_contig6815.2.1|Name=mRNA_P-wetherbeei_contig6815.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig6815:958..1225- (Phaeothamnion wetherbeei SAG_119_79)
TCCGCCGCCGCTGCCATAGCGGCGGGCGCATCGGACAGCAAGGAGCGTAG
CGCGACGCTCCCGGCGCGAGTGGAGGCGGCGTACGCGCGGTTGGTCGGTC
CGCTTCGCAAGGAGCAGTGGTTTCCAGCGGAGTGCATGCCGCTTATGGCG
GCTGCGGATGCCACCCAGACAAAATTCCGGCGATCGCGGCACATCGTCCA
GCAGGCGTCCATCATCGGACACATGATGCGAGAGGGCCTTTTGAATGGCA
GCGGCAGCGGCGACGGC
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