mRNA_P-wetherbeei_contig6815.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6815.1.1
Unique NamemRNA_P-wetherbeei_contig6815.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6815.1.1 vs. uniprot
Match: D7FVJ5_ECTSI (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ5_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.000e-21
Identity = 56/106 (52.83%), Postives = 73/106 (68.87%), Query Frame = 1 
Query:    1 GGGLNPTPFWYVELGAGRGTLGLALVTAFPSAQVTLIERSGVRYKSDHAMRNRSASFMRARIDIRDLDIFGG---SCGGDGRPAVGIAKHLCGVATDLALRALANL 309
            G G N     +VE+GAG+GTLG ++ TAFP + VT++ERS VR K+++ +   S    RARIDIRDL++ G    +  GD RP V +AKHLCGVATDLALRA+  L
Sbjct:  209 GHGENGPSVLHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRLEGVST---RARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRAMLTL 311
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BLAST of mRNA_P-wetherbeei_contig6815.1.1 vs. uniprot
Match: A0A6H5KUX2_9PHAE (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUX2_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 4.860e-21
Identity = 52/91 (57.14%), Postives = 67/91 (73.63%), Query Frame = 1 
Query:   31 YVELGAGRGTLGLALVTAFPSAQVTLIERSGVRYKSDHAMRNRSASFMRARIDIRDLDIFGG---SCGGDGRPAVGIAKHLCGVATDLALR 294
            +VE+GAG+GTLG ++ TAFP + VT++ERS VR K+++ +   S    RARIDIRDLD+ G    +  GD RP V +AKHLCGVATDLALR
Sbjct:  242 HVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRLEGVST---RARIDIRDLDMGGLPSLTAAGDDRPVVAVAKHLCGVATDLALR 329
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BLAST of mRNA_P-wetherbeei_contig6815.1.1 vs. uniprot
Match: A0A7S2RS80_9STRA (tRNA:m(4)X modification enzyme TRM13 (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RS80_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.340e-18
Identity = 52/107 (48.60%), Postives = 66/107 (61.68%), Query Frame = 1 
Query:   31 YVELGAGRGTLGLALVTAFPSAQVTLIERSGVRYKSDHAMR-----------------NRSASFMRARIDIRDLDIFGGSCGGDGRPAVGIAKHLCGVATDLALRAL 300
            +VE GAGRG LGLA+ +  PSA +  +ERSGVR K+D A+R                 N   +F RAR+DIR L++ G      G+P V +AKHLCGVATDLALR+L
Sbjct:  149 FVEWGAGRGMLGLAIHSVLPSAPLIFVERSGVRNKADAALRREKGATDGAVASATTSANEQTTFSRARVDIRHLNLAGLDT--QGKPMVAVAKHLCGVATDLALRSL 253
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BLAST of mRNA_P-wetherbeei_contig6815.1.1 vs. uniprot
Match: W7TT10_9STRA (tRNA:m(4)X modification enzyme TRM13 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TT10_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.130e-17
Identity = 53/95 (55.79%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:   34 VELGAGRGTLGLALVTAFPSAQVTLIERSGVRYKSDHAMRNRSAS--FMRARIDIRDLDIFGGSCGGDG--RPAVGIAKHLCGVATDLALRALAN 306
            VELGAGRGTLG A+  AFP A+V L+ER+GVR K+D   R       F R R+DIRDL I G   G  G   P V + KH+CGVATDL+LRA+A+
Sbjct:  228 VELGAGRGTLGHAVHQAFPEARVVLVERAGVRLKADAPYRRTGEGGVFARYRLDIRDLWINGLPLGPGGLTSPLVFMGKHVCGVATDLSLRAVAD 322
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BLAST of mRNA_P-wetherbeei_contig6815.1.1 vs. uniprot
Match: A0A8K1FML3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FML3_PYTOL)

HSP 1 Score: 85.9 bits (211), Expect = 1.890e-17
Identity = 50/97 (51.55%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:   31 YVELGAGRGTLGLALVTAFPSAQVTLIERSGVRYKSDHAMRNRSAS-----FMRARIDIRDLDIFGGSCGGDGRPAVGIAKHLCGVATDLALRALAN 306
            ++ELGAGRG L LAL   FP +   LI+R+G R K+DH +R+  +       MRA+IDIR L++ G     D  P VG++KHLCGVATDL+LRA+AN
Sbjct:  245 FLELGAGRGMLSLALAQTFPDSLYVLIDRAGSRGKADHFIRDNMSDTSAHKVMRAKIDIRHLNLAGMKELVD-MPIVGMSKHLCGVATDLSLRAIAN 340
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BLAST of mRNA_P-wetherbeei_contig6815.1.1 vs. uniprot
Match: A0A4D9D9Y8_9STRA (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9Y8_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 9.210e-17
Identity = 51/95 (53.68%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:   34 VELGAGRGTLGLALVTAFPSAQVTLIERSGVRYKSDHAMRNRSAS--FMRARIDIRDLDIFGGSCGGDG--RPAVGIAKHLCGVATDLALRALAN 306
            VELGAGRGTLG A+  AFP A+V L+ER+GVR K+D   R       F R R+DIRDL I G   G  G   P   + KH+CG ATDL+LRA+A+
Sbjct:   38 VELGAGRGTLGHAVHQAFPEARVVLVERAGVRLKADAPYRRTGEGGVFARYRLDIRDLWINGLPLGPGGLTSPLAFMGKHVCGAATDLSLRAVAD 132
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BLAST of mRNA_P-wetherbeei_contig6815.1.1 vs. uniprot
Match: A0A485KSY0_9STRA (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KSY0_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 5.470e-15
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:   31 YVELGAGRGTLGLALVTAFPSAQVTLIERSGVRYKSDHAMRNRSASFMRARIDIRDLDIFGGSCGGDGRPAVGIAKHLCGVATDLALRALAN 306
            YVELGAGR  L LAL   +P++   LI+R+G R K+D  +   +    RA+IDIR L++ GG      +P V ++KHLCGVATDL+LRALAN
Sbjct:  256 YVELGAGRAMLSLALTQIYPASPYVLIDRAGSRGKADQYIATENTC-TRAKIDIRHLNL-GGMDQVVQKPVVCLSKHLCGVATDLSLRALAN 345
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BLAST of mRNA_P-wetherbeei_contig6815.1.1 vs. uniprot
Match: A0A067CWT3_SAPPC (tRNA:m(4)X modification enzyme TRM13 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CWT3_SAPPC)

HSP 1 Score: 77.0 bits (188), Expect = 2.620e-14
Identity = 46/94 (48.94%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:   25 FWYVELGAGRGTLGLALVTAFPSAQVTLIERSGVRYKSDHAMRNRSASFMRARIDIRDLDIFGGSCGGDGRPAVGIAKHLCGVATDLALRALAN 306
            F Y+ELGAGR  L LAL   +P++   LI+R+G R K+D  +   S    RA+IDIR L++ G     +  P V ++KHLCGVATDL+LRALA 
Sbjct:  255 FTYMELGAGRAMLSLALTQLYPASPFILIDRAGTRGKADQYIATESTC-TRAKIDIRHLNLAGMKEATE-TPLVCLSKHLCGVATDLSLRALAT 346
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BLAST of mRNA_P-wetherbeei_contig6815.1.1 vs. uniprot
Match: A0A6G0X1C0_9STRA (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X1C0_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.530e-14
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:   31 YVELGAGRGTLGLALVTAFPSAQVTLIERSGVRYKSDHAMRNRSASFMRARIDIRDLDIFGGSCGGDGRPAVGIAKHLCGVATDLALRALAN 306
            YVELGAGR  L LAL   +P++   LI+R+G R K+D  +   +    RA+IDIR L++ G       +P V ++KHLCGVATDL+LRALAN
Sbjct:  240 YVELGAGRAMLSLALTQMYPASPFVLIDRAGSRGKADQYIATENTC-TRAKIDIRHLNLAGMEQVAL-KPVVCLSKHLCGVATDLSLRALAN 329
[Close]
BLAST of mRNA_P-wetherbeei_contig6815.1.1 vs. uniprot
Match: A0A1V9ZFQ9_9STRA (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZFQ9_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.780e-14
Identity = 47/99 (47.47%), Postives = 64/99 (64.65%), Query Frame = 1 
Query:   10 LNPTPFWYVELGAGRGTLGLALVTAFPSAQVTLIERSGVRYKSDHAMRNRSASFMRARIDIRDLDIFGGSCGGDGRPAVGIAKHLCGVATDLALRALAN 306
            L+P+ + Y+ELGAGR  L LAL   +P++   LI+R+G R K+D  +   S    RA+IDIR L++  G       P V ++KHLCGVATDL+LRALA 
Sbjct:  227 LHPS-YTYMELGAGRAMLSLALTQLYPASPFILIDRAGTRGKADQYIATESKC-TRAKIDIRHLNL-SGMQEAVNTPLVCLSKHLCGVATDLSLRALAT 322
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6815.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVJ5_ECTSI1.000e-2152.83tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectoc... [more]
A0A6H5KUX2_9PHAE4.860e-2157.14tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectoc... [more]
A0A7S2RS80_9STRA1.340e-1848.60tRNA:m(4)X modification enzyme TRM13 (Fragment) n=... [more]
W7TT10_9STRA1.130e-1755.79tRNA:m(4)X modification enzyme TRM13 n=2 Tax=Nanno... [more]
A0A8K1FML3_PYTOL1.890e-1751.55Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A4D9D9Y8_9STRA9.210e-1753.68tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Nanno... [more]
A0A485KSY0_9STRA5.470e-1551.09tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Aphan... [more]
A0A067CWT3_SAPPC2.620e-1448.94tRNA:m(4)X modification enzyme TRM13 n=2 Tax=Sapro... [more]
A0A6G0X1C0_9STRA3.530e-1450.00tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Aphan... [more]
A0A1V9ZFQ9_9STRA4.780e-1447.47tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Thrau... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6815contigP-wetherbeei_contig6815:95..652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FVJ5
Preferred nameTRMT13
PFAMsTRM13,zf-TRM13_CCCH,zf-U11-48K
Model size310
Max annot lvl2759|Eukaryota
KEGG koko:K15446
Hectar predicted targeting categoryother localisation
GOsGO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008175,GO:0009451,GO:0009628,GO:0009651,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0071704,GO:0090304,GO:0106050,GO:0140098,GO:0140101,GO:1901360
Exons3
Evalue1.64e-22
EggNOG OGsKOG2811@1|root,KOG2811@2759|Eukaryota
EC2.1.1.225
DescriptiontRNA methylation
Cds size309
COG categoryS
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186939.5374203-CDS-P-wetherbeei_contig6815:94..1971683186939.5374203-CDS-P-wetherbeei_contig6815:94..197Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6815 95..197 -
1683186939.5495222-CDS-P-wetherbeei_contig6815:275..3821683186939.5495222-CDS-P-wetherbeei_contig6815:275..382Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6815 276..382 -
1683186939.5600717-CDS-P-wetherbeei_contig6815:553..6521683186939.5600717-CDS-P-wetherbeei_contig6815:553..652Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6815 554..652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6815.1.1prot_P-wetherbeei_contig6815.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6815 95..652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6815.1.1

>prot_P-wetherbeei_contig6815.1.1 ID=prot_P-wetherbeei_contig6815.1.1|Name=mRNA_P-wetherbeei_contig6815.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=103bp
GGGLNPTPFWYVELGAGRGTLGLALVTAFPSAQVTLIERSGVRYKSDHAM
RNRSASFMRARIDIRDLDIFGGSCGGDGRPAVGIAKHLCGVATDLALRAL
ANL
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mRNA from alignment at P-wetherbeei_contig6815:95..652-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6815.1.1 ID=mRNA_P-wetherbeei_contig6815.1.1|Name=mRNA_P-wetherbeei_contig6815.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig6815:95..652- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGGCTTAAATCCAACGCCGTTTTGGTACGTCGAACTCGGTGCGGG
CCGCGGGACGCTGGGCTTGGCGCTGGTGACGGCCTTTCCCTCTGCGCAGG
TAACTTGGCACCCTGCTGCGAGGTCTGGGCAACTAGATTTTCTGTCTGTT
GGACACATGTTAGCGTTTCTACGTTCCGTCTCTGCCATGGCTGCAATATT
TTTGGGAAATGGCGGCGCTCGCGTCATCCGACCAAACTCCTTCCGTCCCC
TGGCCGCCGGCCTGCCACAGGTGACGTTGATCGAGCGATCCGGCGTCCGC
TACAAGTCCGATCACGCCATGCGCAATCGGAGCGCGTCCTTCATGCGCGC
GCGGATTGACATCCGCGACCTCGACATGTCCCATCTGCCGCCACCGCCCG
TCGTCGGCGACAACGGCATTTGCGACGGTTGCGGCGATGGCGGTTGCAGC
GACAGTTTTGGCGGCAGTTGCGGTGGCGACGGCCGCCCGGCGGTGGGCAT
TGCCAAGCACCTCTGCGGCGTCGCCACGGACCTCGCCCTGCGTGCGCTGG
CAAACCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6815:95..652-

>mRNA_P-wetherbeei_contig6815.1.1 ID=mRNA_P-wetherbeei_contig6815.1.1|Name=mRNA_P-wetherbeei_contig6815.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig6815:95..652- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGGCTTAAATCCAACGCCGTTTTGGTACGTCGAACTCGGTGCGGG
CCGCGGGACGCTGGGCTTGGCGCTGGTGACGGCCTTTCCCTCTGCGCAGG
TGACGTTGATCGAGCGATCCGGCGTCCGCTACAAGTCCGATCACGCCATG
CGCAATCGGAGCGCGTCCTTCATGCGCGCGCGGATTGACATCCGCGACCT
CGACATTTTTGGCGGCAGTTGCGGTGGCGACGGCCGCCCGGCGGTGGGCA
TTGCCAAGCACCTCTGCGGCGTCGCCACGGACCTCGCCCTGCGTGCGCTG
GCAAACCTC
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