mRNA_P-wetherbeei_contig6813.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6813.2.1
Unique NamemRNA_P-wetherbeei_contig6813.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6813.2.1 vs. uniprot
Match: A0A6H5KUC4_9PHAE (Apt1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUC4_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 3.440e-29
Identity = 55/82 (67.07%), Postives = 66/82 (80.49%), Query Frame = 1 
Query:    7 RPLAIKHIRLGEINVLASYEGQLWMNLESFKDVHLKIHPLVYTNKTWTARKLFRRVRRDVALDVLSQVQRNFNNLGLFLTSR 252
            +P+A+KH+RLGE+NV  +Y G  ++ LE   +VHLKIHPLVYTNKTWT RKL  R+RRDV LDVLSQV RNFNNLG FL +R
Sbjct: 1206 KPMAVKHLRLGEVNVFLTYMGDRYLELEDVDNVHLKIHPLVYTNKTWTPRKLLFRMRRDVILDVLSQVSRNFNNLGNFLNTR 1287
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BLAST of mRNA_P-wetherbeei_contig6813.2.1 vs. uniprot
Match: D7G7J9_ECTSI (Apt1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J9_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 6.330e-29
Identity = 54/82 (65.85%), Postives = 66/82 (80.49%), Query Frame = 1 
Query:    7 RPLAIKHIRLGEINVLASYEGQLWMNLESFKDVHLKIHPLVYTNKTWTARKLFRRVRRDVALDVLSQVQRNFNNLGLFLTSR 252
            +P+A+KH+RLGE+NV  +Y G  ++ LE   +VHLK+HPLVYTNKTWT RKL  R+RRDV LDVLSQV RNFNNLG FL +R
Sbjct:  718 KPMAVKHLRLGEVNVFLTYMGDRYLELEDVDNVHLKLHPLVYTNKTWTPRKLLFRMRRDVILDVLSQVSRNFNNLGNFLNTR 799
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BLAST of mRNA_P-wetherbeei_contig6813.2.1 vs. uniprot
Match: I2CQJ8_NANGC (Apt1 domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQJ8_NANGC)

HSP 1 Score: 81.6 bits (200), Expect = 1.380e-18
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:   37 GEINVLASYEGQLWMNLESFKDVHLKIHPLVYTNKTWTARKLFRRVRRDVALDVLSQVQRNFNNLGLFL 243
            GEIN+  SY G+   NLE  + +HLK+HP++YTNKT +AR+L  R+R+DV LD+L QV RNF NLG +L
Sbjct:    1 GEINIFFSYSGK-GGNLEDLEHLHLKVHPIIYTNKTLSARELLARLRKDVVLDLLKQVNRNFANLGAWL 68
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BLAST of mRNA_P-wetherbeei_contig6813.2.1 vs. uniprot
Match: A0A067C0M8_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C0M8_SAPPC)

HSP 1 Score: 84.7 bits (208), Expect = 2.700e-17
Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:    1 APRPLAIKHIRLGEINVLASYEG-----QLWMNLESFKDVHLKIHPLVYTNKTWTARKLFRRVRRDVALDVLSQVQRNFNNLGLFLTSR 252
            A + +  KHIRLG I +L SY+      Q   +LE  +   LKIH LVYT+KT T   LF R+RRD+ LD+LSQV RNFNN+GL L  +
Sbjct: 2085 ATKNMTFKHIRLGTIQILLSYKSGKSVTQPQQHLEDMRGFDLKIHALVYTDKTCTLDDLFLRIRRDIILDILSQVGRNFNNIGLLLKEK 2173
[Close]
BLAST of mRNA_P-wetherbeei_contig6813.2.1 vs. uniprot
Match: A0A1W0AAP8_9STRA (Apt1 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AAP8_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 6.880e-17
Identity = 44/89 (49.44%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:    1 APRPLAIKHIRLGEINVLASYEGQLWMN-----LESFKDVHLKIHPLVYTNKTWTARKLFRRVRRDVALDVLSQVQRNFNNLGLFLTSR 252
            A + +  KHIRLG I V+ +Y+     N     LE  +   LKIH LVYT+KT T  +L  R+RRD+ LD+LSQV RNFNN+G+FL  R
Sbjct: 2086 ATKNMTFKHIRLGTIQVVVNYKSSKASNIHHDHLEEMRGFDLKIHALVYTDKTCTLDELLVRIRRDIILDILSQVGRNFNNIGIFLKER 2174
[Close]
BLAST of mRNA_P-wetherbeei_contig6813.2.1 vs. uniprot
Match: A0A1V9YV55_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YV55_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 6.090e-16
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:    1 APRPLAIKHIRLGEINVLASYE---GQLWMNLESFKDVHLKIHPLVYTNKTWTARKLFRRVRRDVALDVLSQVQRNFNNLGLFLTSR 252
            A + +  +HIRLG ++VL SY+        +LE  +   LK+H LVY +KT T  +L +R+RRD+ LDVLSQV RNFNN+GL L  +
Sbjct: 2037 AAKNMTFRHIRLGTVHVLVSYKRGKAATVQHLEDMRGFDLKLHALVYADKTCTLAELLQRIRRDIILDVLSQVGRNFNNIGLLLKEK 2123
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BLAST of mRNA_P-wetherbeei_contig6813.2.1 vs. uniprot
Match: A0A024TSZ0_9STRA (Apt1 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TSZ0_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 6.100e-16
Identity = 45/88 (51.14%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:   13 LAIKHIRLGEINVLASYEG--------QLWMNLESFKDVHLKIHPLVYTNKTWTARKLFRRVRRDVALDVLSQVQRNFNNLGLFLTSR 252
            +  KHIRLG I VL +Y+          L  +LE  +   LK+H LVYT+KT T   L  RVRRD+ LDVLSQV RNFNN+G+FL  R
Sbjct: 2196 VTFKHIRLGTILVLLTYKSGKATGGAVMLPQHLEEMRGFELKLHSLVYTDKTCTVSDLVLRVRRDILLDVLSQVGRNFNNIGVFLKER 2283
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BLAST of mRNA_P-wetherbeei_contig6813.2.1 vs. uniprot
Match: A0A3L6VCD5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VCD5_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 8.300e-16
Identity = 44/85 (51.76%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:   13 LAIKHIRLGEINVLASYEG-----QLWMNLESFKDVHLKIHPLVYTNKTWTARKLFRRVRRDVALDVLSQVQRNFNNLGLFLTSR 252
            +  KHIRLG I VL +Y+          +LE  +   LK+H LVYT+KT T  +L  RVRRD+ LDVLSQV RNFNN+G+FL  R
Sbjct: 1680 VTFKHIRLGTILVLLTYKSGKATPTTPQHLEEMRGFELKLHSLVYTDKTCTLSELVLRVRRDILLDVLSQVGRNFNNIGIFLKER 1764
[Close]
BLAST of mRNA_P-wetherbeei_contig6813.2.1 vs. uniprot
Match: A0A6G0XTM8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XTM8_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.550e-15
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:   13 LAIKHIRLGEINVLASYEGQLW----MNLESFKDVHLKIHPLVYTNKTWTARKLFRRVRRDVALDVLSQVQRNFNNLGLFLTSR 252
            +  KHIRLG + VL +Y+         +LE  +   LKIH LVYT+KT +   L  RVRRD+ LD+LSQV RNFNN+G+FL  R
Sbjct: 2070 MTFKHIRLGNVLVLLTYKSGKTAVTPQHLEEMRGFELKIHSLVYTDKTCSIEDLLLRVRRDIILDILSQVGRNFNNIGVFLKER 2153
[Close]
BLAST of mRNA_P-wetherbeei_contig6813.2.1 vs. uniprot
Match: A0A485LBR3_9STRA (Aste57867_19007 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBR3_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.550e-15
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:   13 LAIKHIRLGEINVLASYEGQLW----MNLESFKDVHLKIHPLVYTNKTWTARKLFRRVRRDVALDVLSQVQRNFNNLGLFLTSR 252
            +  KHIRLG + VL +Y+         +LE  +   LK+H LVYT+KT T   L  RVRRD+ LD+LSQV RNFNN+G+FL  R
Sbjct: 2099 MTFKHIRLGTVLVLLTYKSGKSAVTPQHLEEMRGFELKLHSLVYTDKTCTVSDLLLRVRRDILLDILSQVGRNFNNIGVFLKER 2182
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6813.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUC4_9PHAE3.440e-2967.07Apt1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G7J9_ECTSI6.330e-2965.85Apt1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
I2CQJ8_NANGC1.380e-1856.52Apt1 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A067C0M8_SAPPC2.700e-1750.56Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1W0AAP8_9STRA6.880e-1749.44Apt1 domain-containing protein n=1 Tax=Thraustothe... [more]
A0A1V9YV55_9STRA6.090e-1647.13Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A024TSZ0_9STRA6.100e-1651.14Apt1 domain-containing protein n=2 Tax=Aphanomyces... [more]
A0A3L6VCD5_9STRA8.300e-1651.76Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A6G0XTM8_9STRA1.550e-1550.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485LBR3_9STRA1.550e-1550.00Aste57867_19007 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6813contigP-wetherbeei_contig6813:1441..1692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog112098.XP_008606587.1
PFAMsApt1,Fmp27_GFWDK
Model size252
Max annot lvl2759|Eukaryota
KEGG koko:K22020
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000902,GO:0000904,GO:0001558,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006950,GO:0007154,GO:0007275,GO:0008150,GO:0009267,GO:0009605,GO:0009653,GO:0009826,GO:0009856,GO:0009860,GO:0009888,GO:0009932,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010015,GO:0010053,GO:0010054,GO:0010104,GO:0010105,GO:0010646,GO:0010648,GO:0012505,GO:0016036,GO:0016043,GO:0016049,GO:0021700,GO:0022414,GO:0022622,GO:0023051,GO:0023057,GO:0030154,GO:0030307,GO:0030427,GO:0031667,GO:0031668,GO:0031669,GO:0032501,GO:0032502,GO:0032989,GO:0033554,GO:0035618,GO:0035619,GO:0035838,GO:0040007,GO:0040008,GO:0042594,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044706,GO:0045927,GO:0048364,GO:0048468,GO:0048469,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048588,GO:0048589,GO:0048731,GO:0048764,GO:0048765,GO:0048767,GO:0048768,GO:0048856,GO:0048868,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051286,GO:0051704,GO:0051716,GO:0060560,GO:0065007,GO:0070297,GO:0070298,GO:0071496,GO:0071695,GO:0071840,GO:0080147,GO:0090404,GO:0090406,GO:0090558,GO:0090627,GO:0099402,GO:0120025,GO:0120038,GO:1902531,GO:1902532,GO:1905392
Exons1
Evalue4.43e-18
EggNOG OGsKOG1910@1|root,KOG1910@2759|Eukaryota
Descriptionpollen tube development
Cds size252
COG categoryE
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186939.4246728-CDS-P-wetherbeei_contig6813:1440..16921683186939.4246728-CDS-P-wetherbeei_contig6813:1440..1692Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6813 1441..1692 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6813.2.1prot_P-wetherbeei_contig6813.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6813 1441..1692 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6813.2.1

>prot_P-wetherbeei_contig6813.2.1 ID=prot_P-wetherbeei_contig6813.2.1|Name=mRNA_P-wetherbeei_contig6813.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=84bp
APRPLAIKHIRLGEINVLASYEGQLWMNLESFKDVHLKIHPLVYTNKTWT
ARKLFRRVRRDVALDVLSQVQRNFNNLGLFLTSR
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mRNA from alignment at P-wetherbeei_contig6813:1441..1692-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6813.2.1 ID=mRNA_P-wetherbeei_contig6813.2.1|Name=mRNA_P-wetherbeei_contig6813.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig6813:1441..1692- (Phaeothamnion wetherbeei SAG_119_79)
GCACCGCGGCCGTTAGCGATCAAGCATATCCGGCTGGGCGAGATCAACGT
GCTGGCGTCGTATGAAGGGCAGCTGTGGATGAACCTCGAGTCATTCAAGG
ATGTCCACTTGAAAATCCATCCTCTCGTCTACACCAACAAGACTTGGACG
GCACGGAAGCTGTTCCGCCGCGTGCGCCGGGACGTGGCGCTCGATGTGCT
CAGCCAGGTGCAGCGCAACTTCAACAACCTGGGGCTCTTTCTCACCAGCC
GC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6813:1441..1692-

>mRNA_P-wetherbeei_contig6813.2.1 ID=mRNA_P-wetherbeei_contig6813.2.1|Name=mRNA_P-wetherbeei_contig6813.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig6813:1441..1692- (Phaeothamnion wetherbeei SAG_119_79)
GCACCGCGGCCGTTAGCGATCAAGCATATCCGGCTGGGCGAGATCAACGT
GCTGGCGTCGTATGAAGGGCAGCTGTGGATGAACCTCGAGTCATTCAAGG
ATGTCCACTTGAAAATCCATCCTCTCGTCTACACCAACAAGACTTGGACG
GCACGGAAGCTGTTCCGCCGCGTGCGCCGGGACGTGGCGCTCGATGTGCT
CAGCCAGGTGCAGCGCAACTTCAACAACCTGGGGCTCTTTCTCACCAGCC
GC
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