prot_P-wetherbeei_contig6812.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-wetherbeei_contig6812.1.1
Unique Name	prot_P-wetherbeei_contig6812.1.1
Type	polypeptide
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length	174

Homology

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BLAST of mRNA_P-wetherbeei_contig6812.1.1 vs. uniprot
Match: A0A835YVH9_9STRA (Polyadenylate-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH9_9STRA)

HSP 1 Score: 319 bits (817), Expect = 3.650e-103
Identity = 150/174 (86.21%), Postives = 163/174 (93.68%), Query Frame = 0

Query:    1 VAPFHSASLYVGDLAPDVAEAVLFDIFNQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTMIKTRPCRIMWSQRDPSLRRSGVGNIFVKNLDTTVDNKALYDTFSLFGNILSCKVATDEHGNSKGYGYVHYETAEAANEAIANIDGLLIANKQVHVGHFVRLN 174
            V PFHSASLYVGDLAPD+ E+ LF+IFNQVGPVASIRVCRDT+TRRSLGYAYVNFHNVADAERALDTMNFT+IK  PCRIMWSQRDPS+RRSGVGN+FVKNLD T+DNKALYDTFSLFGNILSCKVATD+ GNSKGYGYVHYETAE+ANEAIA IDG+++  KQVHVGHFVR N
Sbjct:   57 VTPFHSASLYVGDLAPDITESTLFEIFNQVGPVASIRVCRDTITRRSLGYAYVNFHNVADAERALDTMNFTLIKDNPCRIMWSQRDPSMRRSGVGNVFVKNLDETIDNKALYDTFSLFGNILSCKVATDDAGNSKGYGYVHYETAESANEAIAKIDGMVVGGKQVHVGHFVRRN 230

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BLAST of mRNA_P-wetherbeei_contig6812.1.1 vs. uniprot
Match: D8LTD5_ECTSI (Polyadenylate-binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD5_ECTSI)

HSP 1 Score: 301 bits (772), Expect = 2.930e-96
Identity = 148/172 (86.05%), Postives = 158/172 (91.86%), Query Frame = 0

Query:    1 VAPFHSASLYVGDLAPDVAEAVLFDIFNQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTMIKTRPCRIMWSQRDPSLRRSGVGNIFVKNLDTTVDNKALYDTFSLFGNILSCKVATDEHGNSKGYGYVHYETAEAANEAIANIDGLLIANKQVHVGHFVR 172
            +AP+HSASLYVGDL+ DVAEA LF+IF+QVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFT IK + CRIMWSQRDPSLRRSGVGNIFVKNLD TVDNKALYDTFSLFGNILSCKVATD+ G SKGYGYVHYE   +AN AIA I+G+LIA KQVHVGHFVR
Sbjct:   36 IAPYHSASLYVGDLSKDVAEATLFEIFSQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQVHVGHFVR 207

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BLAST of mRNA_P-wetherbeei_contig6812.1.1 vs. uniprot
Match: A0A6A5AH64_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AH64_9STRA)

HSP 1 Score: 285 bits (728), Expect = 1.270e-95
Identity = 137/168 (81.55%), Postives = 153/168 (91.07%), Query Frame = 0

Query:    3 PFHSASLYVGDLAPDVAEAVLFDIFNQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTMIKTRPCRIMWSQRDPSLRRSGVGNIFVKNLDTTVDNKALYDTFSLFGNILSCKVATDEHGNSKGYGYVHYETAEAANEAIANIDGLLIANKQVHVGHF 170
            PFH+ASLYVGD+ P+V EA+LF+IFN VGPVASIRVCRD VTRRSLGYAYVNFHNV+DAERALDTMN+T IK+ PCRIMWSQRDP+LR+SGVGNIFVKNLDT++DNKALYDTFSLFGNILSCKVA D +GNSKGYGYVHYETAEAA  AI  I+G+LIA  +V VGHF
Sbjct:   31 PFHTASLYVGDIHPEVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNVSDAERALDTMNYTSIKSVPCRIMWSQRDPTLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAYDLNGNSKGYGYVHYETAEAAYLAIEKINGMLIAGTEVFVGHF 198

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BLAST of mRNA_P-wetherbeei_contig6812.1.1 vs. uniprot
Match: A0A2D4BDJ5_PYTIN (Polyadenylate-binding protein n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BDJ5_PYTIN)

HSP 1 Score: 298 bits (763), Expect = 1.490e-95
Identity = 144/168 (85.71%), Postives = 156/168 (92.86%), Query Frame = 0

Query:    3 PFHSASLYVGDLAPDVAEAVLFDIFNQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTMIKTRPCRIMWSQRDPSLRRSGVGNIFVKNLDTTVDNKALYDTFSLFGNILSCKVATDEHGNSKGYGYVHYETAEAANEAIANIDGLLIANKQVHVGHF 170
            PFH+ASLYVGD+ PDV EA+LF+IFN VGPVASIRVCRD VTRRSLGYAYVNFHNVADAERALDTMNFT IK  PCRIMWSQRDPSLR+SGVGNIFVKNLDT++DNKALYDTFSLFGNILSCKVA D +GNSKGYGYVHYETAEAANEAIA I+G+LIA  +V+VGHF
Sbjct:   24 PFHTASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNVADAERALDTMNFTSIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDINGNSKGYGYVHYETAEAANEAIAKINGMLIAGTEVYVGHF 191

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BLAST of mRNA_P-wetherbeei_contig6812.1.1 vs. uniprot
Match: A0A7S2V0G2_9STRA (Polyadenylate-binding protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0G2_9STRA)

HSP 1 Score: 292 bits (747), Expect = 4.910e-93
Identity = 146/174 (83.91%), Postives = 159/174 (91.38%), Query Frame = 0

Query:    3 PFHSASLYVGDLAPDVAEAVLFDIFNQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTMIKTRPCRIMWSQRDPSLRRSGVGNIFVKNLDTTVDNKALYDTFSLFGNILSCKV--ATDEH--GNSKGYGYVHYETAEAANEAIANIDGLLIANKQVHVGHFVR 172
            PFHSASLYVGDLAPDV+EA+LF+IFN VGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMN+T+IK  PCRIMWSQRDPSLRRSGVGNIFVKNLD +VDNKALYDTFSLFGNILSCKV  A D+      +GYGYVHYETAEAANEAIA I+G+LIA K+V+VGHFV+
Sbjct:   11 PFHSASLYVGDLAPDVSEALLFEIFNAVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNYTLIKGVPCRIMWSQRDPSLRRSGVGNIFVKNLDPSVDNKALYDTFSLFGNILSCKVVVAKDDQVSDEEQGYGYVHYETAEAANEAIAKINGMLIAGKEVYVGHFVK 184

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BLAST of mRNA_P-wetherbeei_contig6812.1.1 vs. uniprot
Match: A0A6G0WN78_9STRA (Polyadenylate-binding protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0WN78_9STRA)

HSP 1 Score: 291 bits (746), Expect = 1.510e-92
Identity = 141/168 (83.93%), Postives = 154/168 (91.67%), Query Frame = 0

Query:    3 PFHSASLYVGDLAPDVAEAVLFDIFNQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTMIKTRPCRIMWSQRDPSLRRSGVGNIFVKNLDTTVDNKALYDTFSLFGNILSCKVATDEHGNSKGYGYVHYETAEAANEAIANIDGLLIANKQVHVGHF 170
            PFH+ASLYVGD+ PDV EA+LF+IFN VGPVASIRVCRD VTRRSLGYAYVNFHNV+DAERALDTMN+T IK  PCRIMWSQRDPSLR+SGVGNIFVKNLDT++DNKALYDTFSLFGNILSCKVA D +GNSKGYGYVHYETAEAA EAIA I+G+LIA  +V VGHF
Sbjct:   70 PFHTASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNVSDAERALDTMNYTSIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDINGNSKGYGYVHYETAEAAYEAIAKINGMLIAGTEVFVGHF 237

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BLAST of mRNA_P-wetherbeei_contig6812.1.1 vs. uniprot
Match: A0A6A3LR95_9STRA (Polyadenylate-binding protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LR95_9STRA)

HSP 1 Score: 291 bits (745), Expect = 2.170e-92
Identity = 143/169 (84.62%), Postives = 154/169 (91.12%), Query Frame = 0

Query:    3 PFHSASLYVGDLAPDVAEAVLFDIFNQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTMIKTRPCRIMWSQRDPSLRRSGVGNIFVKNLDTTVDNKALYDTFSLFGNILSCKVATDE-HGNSKGYGYVHYETAEAANEAIANIDGLLIANKQVHVGHF 170
            PFH+ASLYVGD+ PDV EA+LF+IFN VGPVASIRVCRD VTRRSLGYAYVNFHNVADAERALDTMNFT IK  PCRIMWSQRDPSLR+SGVGNIFVKNLDT++DNKALYDTFSLFGNILSCKVA D  +GNSKGYGYVHYETAEAA EAIA I+G+LIA  +V VGHF
Sbjct:   74 PFHTASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNVADAERALDTMNFTSIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDHTNGNSKGYGYVHYETAEAATEAIAKINGMLIAGTEVFVGHF 242

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BLAST of mRNA_P-wetherbeei_contig6812.1.1 vs. uniprot
Match: A0A6T8JM21_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8JM21_9STRA)

HSP 1 Score: 293 bits (749), Expect = 2.430e-92
Identity = 141/173 (81.50%), Postives = 156/173 (90.17%), Query Frame = 0

Query:    3 PFHSASLYVGDLAPDVAEAVLFDIFNQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTMIKTRPCRIMWSQRDPSLRRSGVGNIFVKNLDTTVDNKALYDTFSLFGNILSCKVATD-EHGNSKGYGYVHYETAEAANEAIANIDGLLIANKQVHVGHFVRLN 174
            PFHSASLYVGDLAPDV E +LF+IFN VGPVASIRVCRD VTRRSLGYAY+NFH +ADAERALDTMN+TMIKTRPCRIMWSQRDPSLRRSGVGNIFVKNL T++DNK LYDTFSLFGNILSCKV T+ + G+SKGYGYVHYETAEAAN AI  +DG+LI  ++V VGHF+R N
Sbjct:   52 PFHSASLYVGDLAPDVNEGLLFEIFNAVGPVASIRVCRDAVTRRSLGYAYINFHQIADAERALDTMNYTMIKTRPCRIMWSQRDPSLRRSGVGNIFVKNLHTSIDNKQLYDTFSLFGNILSCKVVTEPQSGDSKGYGYVHYETAEAANAAIEKLDGMLIDGQEVQVGHFMRRN 224

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BLAST of mRNA_P-wetherbeei_contig6812.1.1 vs. uniprot
Match: M4B4S0_HYAAE (Polyadenylate-binding protein n=19 Tax=Peronosporaceae TaxID=4777 RepID=M4B4S0_HYAAE)

HSP 1 Score: 289 bits (739), Expect = 6.480e-92
Identity = 142/169 (84.02%), Postives = 153/169 (90.53%), Query Frame = 0

Query:    3 PFHSASLYVGDLAPDVAEAVLFDIFNQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTMIKTRPCRIMWSQRDPSLRRSGVGNIFVKNLDTTVDNKALYDTFSLFGNILSCKVATDEH-GNSKGYGYVHYETAEAANEAIANIDGLLIANKQVHVGHF 170
            PFH+ASLYVGD+ PDV EA+LF+IFN VGPVASIRVCRD VTRRSLGYAYVNFHNVADAERALDTMNFT IK+ PCRIMWSQRDPSLR+SGVGNIFVKNLD ++DNKALYDTFSLFGNILSCKVA D   GNSKGYGYVHYETAEAA EAIA I+G+LIA  +V VGHF
Sbjct:   33 PFHTASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNVADAERALDTMNFTSIKSVPCRIMWSQRDPSLRKSGVGNIFVKNLDLSIDNKALYDTFSLFGNILSCKVAIDHTTGNSKGYGYVHYETAEAATEAIAKINGMLIAGTEVFVGHF 201

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BLAST of mRNA_P-wetherbeei_contig6812.1.1 vs. uniprot
Match: K3X8Z0_GLOUD (Polyadenylate-binding protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X8Z0_GLOUD)

HSP 1 Score: 287 bits (735), Expect = 2.440e-91
Identity = 142/169 (84.02%), Postives = 153/169 (90.53%), Query Frame = 0

Query:    3 PFHSASLYVGDLAPDVAEAVLFDIFNQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMNFTMIKTRPCRIMWSQRDPSLRRSGVGNIFVKNLDTTVDNKALYDTFSLFGNILSCKVATDEH-GNSKGYGYVHYETAEAANEAIANIDGLLIANKQVHVGHF 170
            PFH+ASLYVGD+ PDV EA+LF+IFN VGPVASIRVCRD VTRRSLGYAYVNFHNVADAERALDTMNFT IK  PCRIMWSQRDPSLR+SGVGNIFVKNLDT++DNKALYDTFSLFGNILSCKVA D   G SKGYGYVHYETAEAA+EAIA I+G+LIA  +V VGHF
Sbjct:   28 PFHTASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNVADAERALDTMNFTSIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDNTTGASKGYGYVHYETAEAAHEAIAKINGMLIAGTEVFVGHF 196

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig6812.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig6812.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835YVH9_9STRA	3.650e-103	86.21	Polyadenylate-binding protein n=1 Tax=Tribonema mi...	[more]
D8LTD5_ECTSI	2.930e-96	86.05	Polyadenylate-binding protein n=2 Tax=Ectocarpus T...	[more]
A0A6A5AH64_9STRA	1.270e-95	81.55	Uncharacterized protein (Fragment) n=1 Tax=Aphanom...	[more]
A0A2D4BDJ5_PYTIN	1.490e-95	85.71	Polyadenylate-binding protein n=2 Tax=Pythium TaxI...	[more]
A0A7S2V0G2_9STRA	4.910e-93	83.91	Polyadenylate-binding protein n=2 Tax=Fibrocapsa j...	[more]
A0A6G0WN78_9STRA	1.510e-92	83.93	Polyadenylate-binding protein n=2 Tax=Aphanomyces ...	[more]
A0A6A3LR95_9STRA	2.170e-92	84.62	Polyadenylate-binding protein n=5 Tax=Phytophthora...	[more]
A0A6T8JM21_9STRA	2.430e-92	81.50	Hypothetical protein n=1 Tax=Proboscia inermis Tax...	[more]
M4B4S0_HYAAE	6.480e-92	84.02	Polyadenylate-binding protein n=19 Tax=Peronospora...	[more]
K3X8Z0_GLOUD	2.440e-91	84.02	Polyadenylate-binding protein n=2 Tax=Pythiaceae T...	[more]

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InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 96..168 e-value: 9.2E-21 score: 85.0 coord: 8..81 e-value: 1.3E-21 score: 87.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 97..166 e-value: 5.1E-19 score: 67.9 coord: 9..78 e-value: 1.5E-19 score: 69.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 95..174 score: 16.278412
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..85 score: 16.329578
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 97..169 e-value: 6.6E-21 score: 76.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..96 e-value: 1.3E-24 score: 88.9
None	No IPR available	PANTHER	PTHR24012	RNA BINDING PROTEIN	coord: 4..166
None	No IPR available	PANTHER	PTHR24012:SF466	POLYADENYLATE-BINDING PROTEIN 1-LIKE	coord: 4..166
None	No IPR available	CDD	cd12378	RRM1_I_PABPs	coord: 8..87 e-value: 2.8862E-55 score: 167.326
IPR045305	PABP, RNA recognition motif 2	CDD	cd12379	RRM2_I_PABPs	coord: 93..169 e-value: 5.92414E-42 score: 133.446
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..169

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig6812	contig	P-wetherbeei_contig6812:1..2037 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig6812.1.1	mRNA_P-wetherbeei_contig6812.1.1	Phaeothamnion wetherbeei SAG_119_79	mRNA	P-wetherbeei_contig6812 1..2037 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-wetherbeei_contig6812.1.1 ID=prot_P-wetherbeei_contig6812.1.1|Name=mRNA_P-wetherbeei_contig6812.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=174bp
VAPFHSASLYVGDLAPDVAEAVLFDIFNQVGPVASIRVCRDTVTRRSLGY
AYVNFHNVADAERALDTMNFTMIKTRPCRIMWSQRDPSLRRSGVGNIFVK
NLDTTVDNKALYDTFSLFGNILSCKVATDEHGNSKGYGYVHYETAEAANE
AIANIDGLLIANKQVHVGHFVRLN

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR045305	RRM2_I_PABPs
IPR035979	RBD_domain_sf