mRNA_P-wetherbeei_contig6808.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6808.1.1
Unique NamemRNA_P-wetherbeei_contig6808.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig6808.1.1 vs. uniprot
Match: A0A836CAX8_9STRA (Sec23/Sec24 trunk domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAX8_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 7.760e-20
Identity = 42/67 (62.69%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:    1 LQVSDLNDLFLPCPEDLLANLSDSRKVVESLLEALPTMFAGTRNTESCLGSALSAAGRVMAHIGGKV 201
            L VSD++DLFLPCP+DLL NL++SR VV++LL+ALP M    R+ +S LG AL+AAG+VMAH+GGK+
Sbjct:  333 LVVSDISDLFLPCPDDLLVNLAESRAVVDALLDALPQMHRAARSVDSALGPALNAAGKVMAHLGGKM 399
[Close]
BLAST of mRNA_P-wetherbeei_contig6808.1.1 vs. uniprot
Match: A0A7S4D505_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D505_HETAK)

HSP 1 Score: 89.7 bits (221), Expect = 2.680e-19
Identity = 43/65 (66.15%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    7 VSDLNDLFLPCPEDLLANLSDSRKVVESLLEALPTMFAGTRNTESCLGSALSAAGRVMAHIGGKV 201
            VSDL D+FLPCPEDLL NL +SR VVE+LLE+LPTM+A     ESCLG AL  A R M H+GGK+
Sbjct:  184 VSDLADVFLPCPEDLLVNLQESRAVVEALLESLPTMYAQNPAAESCLGPALMGAYRAMGHVGGKL 248
[Close]
BLAST of mRNA_P-wetherbeei_contig6808.1.1 vs. uniprot
Match: A0A067CH61_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CH61_SAPPC)

HSP 1 Score: 85.5 bits (210), Expect = 8.290e-18
Identity = 39/65 (60.00%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    7 VSDLNDLFLPCPEDLLANLSDSRKVVESLLEALPTMFAGTRNTESCLGSALSAAGRVMAHIGGKV 201
            V D+N+LF+P P++LL NLSDSR V+ESLLE LP M  GTRN ++CLG A+ AA R+M  +GGK+
Sbjct:  375 VPDINELFIPIPDELLVNLSDSRDVIESLLEMLPRMHQGTRNPDTCLGPAIRAAFRLMTSVGGKM 439
[Close]
BLAST of mRNA_P-wetherbeei_contig6808.1.1 vs. uniprot
Match: T0QMG2_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QMG2_SAPDV)

HSP 1 Score: 85.5 bits (210), Expect = 8.300e-18
Identity = 39/65 (60.00%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    7 VSDLNDLFLPCPEDLLANLSDSRKVVESLLEALPTMFAGTRNTESCLGSALSAAGRVMAHIGGKV 201
            V D+N+LF+P P++LL NLSDSR V+ESLLE LP M  GTRN ++CLG A+ AA R+M  +GGK+
Sbjct:  287 VPDINELFIPIPDELLVNLSDSRDVIESLLEMLPRMHQGTRNPDTCLGPAIRAAFRLMTSVGGKM 351
[Close]
BLAST of mRNA_P-wetherbeei_contig6808.1.1 vs. uniprot
Match: A0A067CLK6_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CLK6_SAPPC)

HSP 1 Score: 85.1 bits (209), Expect = 1.140e-17
Identity = 40/65 (61.54%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    7 VSDLNDLFLPCPEDLLANLSDSRKVVESLLEALPTMFAGTRNTESCLGSALSAAGRVMAHIGGKV 201
            V D+N+LF+P P++LL NLSDSR VVESLLE LP M  GTRN ++CLG A+ AA R+M  +GGK+
Sbjct:  464 VPDINELFIPIPDELLVNLSDSRDVVESLLEMLPRMHQGTRNPDTCLGPAIRAAFRLMTALGGKM 528
[Close]
BLAST of mRNA_P-wetherbeei_contig6808.1.1 vs. uniprot
Match: A0A7S1CB04_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CB04_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.550e-17
Identity = 42/67 (62.69%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 LQVSDLNDLFLPCPEDLLANLSDSRKVVESLLEALPTMFAGTRNTESCLGSALSAAGRVMAHIGGKV 201
            L VSD+ + FLP P+DLL NLSDSR VV++LL++LP MFAGT   ESC+G AL +A  VM HIGGK+
Sbjct:  392 LVVSDIAEPFLPVPDDLLVNLSDSRTVVDALLDSLPDMFAGTSIVESCMGPALLSAHAVMKHIGGKM 458
[Close]
BLAST of mRNA_P-wetherbeei_contig6808.1.1 vs. uniprot
Match: A0A444E9V2_ENSVE (Uncharacterized protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444E9V2_ENSVE)

HSP 1 Score: 83.6 bits (205), Expect = 3.070e-17
Identity = 40/67 (59.70%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 LQVSDLNDLFLPCPEDLLANLSDSRKVVESLLEALPTMFAGTRNTESCLGSALSAAGRVMAHIGGKV 201
            L V+DL+D+FLP P+DLL NLSDSR VV++ L++LP+MF GT N ES  G AL AA  VM+ +GGK+
Sbjct:    2 LVVADLDDVFLPLPDDLLVNLSDSRHVVDAFLDSLPSMFQGTSNVESAFGPALKAAFMVMSQLGGKL 68
[Close]
BLAST of mRNA_P-wetherbeei_contig6808.1.1 vs. uniprot
Match: A0A804HP46_MUSAM (Uncharacterized protein n=3 Tax=Musa TaxID=4640 RepID=A0A804HP46_MUSAM)

HSP 1 Score: 83.2 bits (204), Expect = 5.410e-17
Identity = 40/67 (59.70%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:    1 LQVSDLNDLFLPCPEDLLANLSDSRKVVESLLEALPTMFAGTRNTESCLGSALSAAGRVMAHIGGKV 201
            L V+DL+D+FLP P+DLL NLSDSR VV++ L++LP MF GT N ES  G AL AA  VM+ +GGK+
Sbjct:  516 LVVADLDDVFLPLPDDLLVNLSDSRHVVDAFLDSLPVMFQGTSNVESAFGPALKAAFMVMSQLGGKL 582
[Close]
BLAST of mRNA_P-wetherbeei_contig6808.1.1 vs. uniprot
Match: UPI000C1CF1B0 (protein transport protein Sec24-like At3g07100 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CF1B0)

HSP 1 Score: 80.1 bits (196), Expect = 5.840e-17
Identity = 37/65 (56.92%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    7 VSDLNDLFLPCPEDLLANLSDSRKVVESLLEALPTMFAGTRNTESCLGSALSAAGRVMAHIGGKV 201
            VSDL+D+F+P P+DLL NLS+SR VV++ L++LP+MF G  N ES  G AL AA  VM+ +GGK+
Sbjct:   55 VSDLDDIFIPLPDDLLVNLSESRNVVDAFLDSLPSMFEGNMNVESAFGPALKAAFIVMSQLGGKL 119
[Close]
BLAST of mRNA_P-wetherbeei_contig6808.1.1 vs. uniprot
Match: A0A0G4F5N7_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F5N7_VITBC)

HSP 1 Score: 82.8 bits (203), Expect = 7.370e-17
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:    1 LQVSDLNDLFLPCPEDLLANLSDSRKVVESLLEALPTMFAGTRNTESCLGSALSAAGRVMAHIGGKV 201
            L VSDL DLFLP P+D+L N S+S KVV+ LL++LP+M   T+  ESCLGSA+ AA   + HIGGKV
Sbjct:  378 LVVSDLEDLFLPLPDDILVNASESEKVVQGLLDSLPSMHRNTKINESCLGSAVKAAHMAVKHIGGKV 444
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6808.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CAX8_9STRA7.760e-2062.69Sec23/Sec24 trunk domain-containing protein n=1 Ta... [more]
A0A7S4D505_HETAK2.680e-1966.15Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A067CH61_SAPPC8.290e-1860.00Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
T0QMG2_SAPDV8.300e-1860.00Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A067CLK6_SAPPC1.140e-1761.54Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A7S1CB04_9STRA1.550e-1762.69Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A444E9V2_ENSVE3.070e-1759.70Uncharacterized protein n=1 Tax=Ensete ventricosum... [more]
A0A804HP46_MUSAM5.410e-1759.70Uncharacterized protein n=3 Tax=Musa TaxID=4640 Re... [more]
UPI000C1CF1B05.840e-1756.92protein transport protein Sec24-like At3g07100 n=1... [more]
A0A0G4F5N7_VITBC7.370e-1759.70Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6808contigP-wetherbeei_contig6808:166..593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog112098.XP_008610658.1
Preferred nameSEC24B
PFAMsGelsolin,Sec23_BS,Sec23_helical,Sec23_trunk,zf-Sec23_Sec24
Model size213
Max annot lvl2759|Eukaryota
KEGG koko:K14007
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0002376,GO:0002474,GO:0002478,GO:0002495,GO:0002504,GO:0002791,GO:0002793,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005798,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006914,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009889,GO:0009987,GO:0010556,GO:0010869,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016236,GO:0019222,GO:0019882,GO:0019884,GO:0019886,GO:0022607,GO:0030117,GO:0030120,GO:0030127,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031323,GO:0031410,GO:0031982,GO:0031984,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033218,GO:0034613,GO:0034622,GO:0035459,GO:0042175,GO:0042277,GO:0042592,GO:0042632,GO:0042886,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045714,GO:0046872,GO:0046907,GO:0046914,GO:0048002,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048475,GO:0048518,GO:0048522,GO:0048878,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051246,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0055088,GO:0055092,GO:0060255,GO:0061024,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0070201,GO:0070727,GO:0070971,GO:0071702,GO:0071705,GO:0071840,GO:0080090,GO:0090087,GO:0090110,GO:0090114,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:0098852,GO:1903530,GO:1903532,GO:1904951
Exons2
Evalue1.36e-18
EggNOG OGsCOG5028@1|root,KOG1985@2759|Eukaryota
DescriptionER to Golgi vesicle-mediated transport
Cds size213
COG categoryU
BRITEko00000,ko00001,ko00002,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186939.1427433-CDS-P-wetherbeei_contig6808:165..3001683186939.1427433-CDS-P-wetherbeei_contig6808:165..300Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6808 166..300 -
1683186939.1548452-CDS-P-wetherbeei_contig6808:515..5931683186939.1548452-CDS-P-wetherbeei_contig6808:515..593Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6808 516..593 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6808.1.1prot_P-wetherbeei_contig6808.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6808 166..593 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6808.1.1

>prot_P-wetherbeei_contig6808.1.1 ID=prot_P-wetherbeei_contig6808.1.1|Name=mRNA_P-wetherbeei_contig6808.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=71bp
LQVSDLNDLFLPCPEDLLANLSDSRKVVESLLEALPTMFAGTRNTESCLG
SALSAAGRVMAHIGGKVREL*
back to top

mRNA from alignment at P-wetherbeei_contig6808:166..593-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6808.1.1 ID=mRNA_P-wetherbeei_contig6808.1.1|Name=mRNA_P-wetherbeei_contig6808.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=428bp|location=Sequence derived from alignment at P-wetherbeei_contig6808:166..593- (Phaeothamnion wetherbeei SAG_119_79)
CTGCAGGTGAGCGACCTGAACGACCTGTTCCTGCCGTGCCCGGAGGACCT
CCTCGCCAACCTCTCTGACAGCCGCAAGGTCAGTCAGTACTCTAGAATAG
TGTACTGCCTCCGCGTTTCCTCTCTTTCCTTTGGACGTTTATTTGGATCT
TGTGGATGATCAGTGCTGCCCCTCTTCAAGGCTTGAGCTTGATAACGTCG
ATCACTTGGTTTACATGAAGGAAGGCTTGCATTTAGACGATGATGCTTAT
GGCAGGAGTGCTGTTTCCCGTCCCTTCTCTATTTTCATCCCAGGTGGTCG
AGTCGCTGCTGGAGGCGCTGCCGACGATGTTCGCGGGGACGCGCAACACG
GAGAGCTGCCTCGGGAGCGCCCTCAGCGCTGCCGGACGCGTCATGGCGCA
CATAGGCGGCAAGGTCAGAGAGCTTTAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6808:166..593-

>mRNA_P-wetherbeei_contig6808.1.1 ID=mRNA_P-wetherbeei_contig6808.1.1|Name=mRNA_P-wetherbeei_contig6808.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig6808:166..593- (Phaeothamnion wetherbeei SAG_119_79)
CTGCAGGTGAGCGACCTGAACGACCTGTTCCTGCCGTGCCCGGAGGACCT
CCTCGCCAACCTCTCTGACAGCCGCAAGGTGGTCGAGTCGCTGCTGGAGG
CGCTGCCGACGATGTTCGCGGGGACGCGCAACACGGAGAGCTGCCTCGGG
AGCGCCCTCAGCGCTGCCGGACGCGTCATGGCGCACATAGGCGGCAAGGT
CAGAGAGCTTTAA
back to top